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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD789
Library VS
(Link to library)
Clone ID VSD789
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14805-1
Original site URL
Representative seq. ID VSD789Z
(Link to Original site)
Representative DNA sequence 
>VSD789 (VSD789Q) /CSM/VS/VSD7-D/VSD789Q.Seq.d/
XXXXXXXXXXGTAATTGGTAGACTTCAACTTTGGAATTTTCATATGCACAAGATTTCTGA
TATTCCAACCAAACAACCAATATCGTGAAACCAATGGATTCATTCTCTTCTTTGATGTTA
CAAATAAATCTTCCTTTTTACAATTATCATCTTTGATTGAATTGGTTAGAGCTAAATGTG
CTGATGAAAATAATAATTTCAATTGTCAATCTAATAGTCGTAATAGTACAAATTATAATC
GTCATAGTGTTGGTAATCATTGTCCAAATAGTCCTCAAAAAGGTGAGAAAGAGAATAATA
CACATTCATCAACGGCACCACCAGCTCCACCTCCTTTACCTCCAATTGTTATCGTTGGCA
ATAAATGTGATGATGTAAGCAACACTGTTGTAGATCCAATAGCCGCTAAAAAATATTGTG
ATTCACTTTCCATTCCTTTATTATTCATATCTGCAAAAACAAATGAAAATGTCAATGAAG
NTTTCAATATTCTTCAAGGTTTAATAATAAAACAAATGAAAATCAAAGAAAGAGAAAGAC
AAAAACTTTTAAAACAAAAACATATTAAAAAAGAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
---*LVDFNFGIFICTRFLIFQPNNQYRETNGFILFFDVTNKSSFLQLSSLIELVRAKCA
DENNNFNCQSNSRNSTNYNRHSVGNHCPNSPQKGEKENNTHSSTAPPAPPPLPPIVIVGN
KCDDVSNTVVDPIAAKKYCDSLSIPLLFISAKTNENVNEXFNILQGLIIKQMKIKERERQ
KLLKQKHIKKD
Translated Amino Acid sequence (All Frames) 
Frame A:
---*LVDFNFGIFICTRFLIFQPNNQYRETNGFILFFDVTNKSSFLQLSSLIELVRAKCA
DENNNFNCQSNSRNSTNYNRHSVGNHCPNSPQKGEKENNTHSSTAPPAPPPLPPIVIVGN
KCDDVSNTVVDPIAAKKYCDSLSIPLLFISAKTNENVNEXFNILQGLIIKQMKIKERERQ
KLLKQKHIKKD


Frame B:
---nw*tstlefsyaqdf*ysnqttnivkpmdsfsslmlqinlpfynyhl*lnwlelnvl
mkiiisivnlivvivqiiivivlviivqivlkkvrkriihihqrhhqlhllylqllslai
nvmm*atll*iq*plknivihfpflyysylqkqmkmsmkxsiffkv***nk*kskkekdk
nf*nknilkk


Frame C:
---igrlqlwnfhmhkisdiptkqpis*nqwihsll*cyk*iflftiiifd*ig*s*mc*
*k**fqlsi**s**ykl*ss*cw*slsk*sskr*ere*ytfingttsstsftsncyrwq*
m**ckqhccrsnsr*kil*ftfhsfiihicknk*kcq*xfqyssrfnnktnenqrkrktk
tfktkty*kr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD789 (VSD789Q) /CSM/VS/VSD7-D/VSD789Q.Seq.d/                        989   0.0
VSG476 (VSG476Q) /CSM/VS/VSG4-D/VSG476Q.Seq.d/                        973   0.0
VSI382 (VSI382Q) /CSM/VS/VSI3-D/VSI382Q.Seq.d/                        967   0.0
VSH715 (VSH715Q) /CSM/VS/VSH7-A/VSH715Q.Seq.d/                        967   0.0
VSE371 (VSE371Q) /CSM/VS/VSE3-C/VSE371Q.Seq.d/                        856   0.0
VSJ268 (VSJ268Q) /CSM/VS/VSJ2-C/VSJ268Q.Seq.d/                        823   0.0
VSI302 (VSI302Q) /CSM/VS/VSI3-A/VSI302Q.Seq.d/                        819   0.0
VSB792 (VSB792Q) /CSM/VS/VSB7-D/VSB792Q.Seq.d/                        771   0.0
VSI219 (VSI219Q) /CSM/VS/VSI2-A/VSI219Q.Seq.d/                        722   0.0
VSB189 (VSB189Q) /CSM/VS/VSB1-D/VSB189Q.Seq.d/                        622   e-177
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264568) Dictyostelium discoideum vegetative cDNA clone:VS...   979   0.0    1
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...   848   0.0    2
(AU267858) Dictyostelium discoideum vegetative cDNA clone:VS...   848   0.0    2
(AU266546) Dictyostelium discoideum vegetative cDNA clone:VS...   848   0.0    2
(AU263059) Dictyostelium discoideum vegetative cDNA clone:VS...   848   0.0    1
(AU268610) Dictyostelium discoideum vegetative cDNA clone:VS...   831   0.0    1
(AU269670) Dictyostelium discoideum vegetative cDNA clone:VS...   815   0.0    1
(AU268473) Dictyostelium discoideum vegetative cDNA clone:VS...   462   0.0    3
(AU262252) Dictyostelium discoideum vegetative cDNA clone:VS...   763   0.0    1
(AU268340) Dictyostelium discoideum vegetative cDNA clone:VS...   714   0.0    1
dna update 2009. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86JP5) RecName: Full=Ras-related protein RabR;  &AC115599_14(A...   278   2e-82
AC115599_15(AC115599|pid:none) Dictyostelium discoideum chromoso...    82   7e-15
AC115599_21(AC115599|pid:none) Dictyostelium discoideum chromoso...    68   1e-10
(Q55EG6) RecName: Full=Ras-related protein RabT1;                      62   1e-08
EF147099_1(EF147099|pid:none) Populus trichocarpa clone WS01227_...    53   6e-06
J02998_1(J02998|pid:none) Rat ras-related protein mRNA, clone NT...    51   2e-05
AC116984_79(AC116984|pid:none) Dictyostelium discoideum chromoso...    51   2e-05
GM977167_1(GM977167|pid:none) Sequence 75 from Patent WO20081456...    51   2e-05
(P34140) RecName: Full=Ras-related protein Rab-1B;                     51   2e-05
(Q558I0) RecName: Full=Ras-related protein RabF1;                      51   2e-05
protein update 2009. 3.21
PSORT 

 psg: 0.75  gvh: 0.69  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VSD789 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSD789Z
3' end seq. 
>VSD789Z.Seq
----------GTAATTGGTAGACTTCAACTTTGGAATTTTCATATGCACAAGATTTCTGA
TATTCCAACCAAACAACCAATATCGTGAAACCAATGGATTCATTCTCTTCTTTGATGTTA
CAAATAAATCTTCCTTTTTACAATTATCATCTTTGATTGAATTGGTTAGAGCTAAATGTG
CTGATGAAAATAATAATTTCAATTGTCAATCTAATAGTCGTAATAGTACAAATTATAATC
GTCATAGTGTTGGTAATCATTGTCCAAATAGTCCTCAAAAAGGTGAGAAAGAGAATAATA
CACATTCATCAACGGCACCACCAGCTCCACCTCCTTTACCTCCAATTGTTATCGTTGGCA
ATAAATGTGATGATGTAAGCAACACTGTTGTAGATCCAATAGCCGCTAAAAAATATTGTG
ATTCACTTTCCATTCCTTTATTATTCATATCTGCAAAAACAAATGAAAATGTCAATGAAG
NTTTCAATATTCTTCAAGGTTTAATAATAAAACAAATGAAAATCAAAGAAAGAGAAAGAC
AAAAACTTTTAAAACAAAAACATATTAAAAAAGAT
Length of 3' end seq. 565
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -