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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD768
Library VS
(Link to library)
Clone ID VSD768
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02778-1
Original site URL
Representative seq. ID VSD768P
(Link to Original site)
Representative DNA sequence 
>VSD768 (VSD768Q) /CSM/VS/VSD7-C/VSD768Q.Seq.d/
GATAAAGTTAGAAATAACCCAAAAAAATTNTTCATCTATTGGTTCATGCAATCATTATGG
ATTAATTTTACAATCACTCCTTTATTATTAGTTACTCATXXXXXXXXXXGATATGTTTAT
GGGTTAAGACGTGCATTAATTGTATCAATTTTCATTATTGTATGGTCAAGTAGGGTTAGT
AATTTTTCTCANCGATAGAATTAAAAGAAATAAAAAAGATAAACGTTTTGATAAAGTTAG
AAATAACCCAAAAAAATTTTTCATCTATTGGTTCATGCAATCATTATGGATTAATTTTAC
AATCACTCCTTTATTATTAGTTACTCATCAACATTTTTCAATTTCTTTAAGGTTAATAGA
TTATATATTAATTTTATTATGGAGTACATTTTTTACAATTGAAGCTGTTGCAGATGGACA
AAAAACACTATTTTTAGGTAAACCAGAGAATAAAGGTAAATTTATTAACCAAGGATTATG
GAAGAGACTTTGTCGTCATCCAAATTATTTCTCTGAAATAATGATGCATTGGATAATTTA
TTTCATTTGTTTTAGAGGATTGGATTCTTATTGGTATAAGTTTATTTCTTTGATTTCTCC
TTTATTTATAAGTTTTTTAATGTTAAAAATTTCAACTCCAATGATGGAAAAAATATCAGC
ATGAAAAATTTTCTGGAAATCCTCAATACCAAGAATATAAAAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
DKVRNNPKKXFIYWFMQSLWINFTITPLLLVTH---

---YVYGLRRALIVSIFIIVWSSRVSNFSXR*n*kk*kr*tf**s*k*pkkifhllvhai
imd*fynhsfiisysstffnffkvnrlyinfimeyifyn*sccrwtkntifr*tre*r*i
y*primeetlsssklfl*nndaldnlfhlf*rigfllv*vyffdfsfiykffnvknfnsn
dgknismknfleilntknikn
Translated Amino Acid sequence (All Frames) 
Frame A:
DKVRNNPKKXFIYWFMQSLWINFTITPLLLVTH---

---dmfmg*dvh*lyqfsllygqvglviflxdrikrnkkdkrfdkvrnnpkkffiywfmq
slwinftitplllvthqhfsislrlidyilillwstfftieavadgqktlflgkpenkgk
finqglwkrlcrhpnyfseimmhwiiyficfrgldsywykfislisplfisflmlkistp
mmekisa*kifwkssipri*k

Frame B:
ikleitqknxssigscnhyglilqsllyy*ll---

---iclwvktcincinfhycmvk*g**ffsxielkeikkinvlikleitqknfssigscn
hyglilqsllyy*llinifqfl*g**iiy*fyygvhflqlkllqmdkkhyf*vnqrikvn
lltkdygrdfvviqiislk**cig*fisfvledwiligislfl*fllyl*vf*c*kfqlq
*wkkyqhekfsgnpqyqeykk

Frame C:
*s*k*pkkixhllvhaiimd*fynhsfiisys---

---YVYGLRRALIVSIFIIVWSSRVSNFSXR*n*kk*kr*tf**s*k*pkkifhllvhai
imd*fynhsfiisysstffnffkvnrlyinfimeyifyn*sccrwtkntifr*tre*r*i
y*primeetlsssklfl*nndaldnlfhlf*rigfllv*vyffdfsfiykffnvknfnsn
dgknismknfleilntknikn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD768 (VSD768Q) /CSM/VS/VSD7-C/VSD768Q.Seq.d/                       1243   0.0
AFI480 (AFI480Q) /CSM/AF/AFI4-D/AFI480Q.Seq.d/                        961   0.0
SSH319 (SSH319Q) /CSM/SS/SSH3-A/SSH319Q.Seq.d/                        890   0.0
SSH320 (SSH320Q) /CSM/SS/SSH3-A/SSH320Q.Seq.d/                        886   0.0
VSJ363 (VSJ363Q) /CSM/VS/VSJ3-C/VSJ363Q.Seq.d/                        801   0.0
VFL256 (VFL256Q) /CSM/VF/VFL2-C/VFL256Q.Seq.d/                         44   0.003
VFJ332 (VFJ332Q) /CSM/VF/VFJ3-B/VFJ332Q.Seq.d/                         44   0.003
VSH283 (VSH283Q) /CSM/VS/VSH2-D/VSH283Q.Seq.d/                         38   0.18
VSG120 (VSG120Q) /CSM/VS/VSG1-A/VSG120Q.Seq.d/                         38   0.18
VFL855 (VFL855Q) /CSM/VF/VFL8-C/VFL855Q.Seq.d/                         38   0.18
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264549) Dictyostelium discoideum vegetative cDNA clone:VS...   890   0.0    2
(AU052005) Dictyostelium discoideum slug cDNA, clone SSH319.      791   0.0    3
(AU038138) Dictyostelium discoideum slug cDNA, clone SSH320.      791   0.0    3
(BJ344032) Dictyostelium discoideum cDNA clone:dda17p20, 3' ...   733   0.0    3
(AU269813) Dictyostelium discoideum vegetative cDNA clone:VS...   726   0.0    2
(AU269814) Dictyostelium discoideum vegetative cDNA clone:VS...   726   0.0    1
(AU264548) Dictyostelium discoideum vegetative cDNA clone:VS...   137   6e-34  2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.004  15
(CO535487) tai03b05.y1 HyEch JUMY T1 Hydractinia echinata cD...    40   0.015  2
(DN602506) HEAB-0028E15.g1 Hydra_EST_HyEch_JUMY_T2 Hydractin...    40   0.019  2
dna update 2009. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107828_1(BC107828|pid:none) Danio rerio wu:fc47e12, mRNA (cDNA...    93   7e-18
CR954203_307(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    92   2e-17
BC158462_1(BC158462|pid:none) Xenopus tropicalis hypothetical pr...    91   3e-17
CP000583_304(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    91   4e-17
AY085147_1(AY085147|pid:none) Arabidopsis thaliana clone 13335 m...    88   3e-16
AC012679_6(AC012679|pid:none) Arabidopsis thaliana chromosome 1 ...    87   4e-16
AY054255_1(AY054255|pid:none) Arabidopsis thaliana At1g73650/F25...    87   4e-16
AK316743_1(AK316743|pid:none) Arabidopsis thaliana AT1G73650 mRN...    87   4e-16
BT060483_1(BT060483|pid:none) Zea mays full-length cDNA clone ZM...    85   2e-15
AC034107_18(AC034107|pid:none) Sequence of BAC T10F20 from Arabi...    83   7e-15
protein update 2009. 7.30
PSORT 

 psg: 0.93  gvh: 0.64  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.57  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 12.0 %: extracellular, including cell wall
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for VSD768 is mit
5' end seq. ID VSD768F
5' end seq. 
>VSD768F.Seq
GATAAAGTTAGAAATAACCCAAAAAAATTNTTCATCTATTGGTTCATGCAATCATTATGG
ATTAATTTTACAATCACTCCTTTATTATTAGTTACTCAT----------
Length of 5' end seq. 99
3' end seq. ID VSD768Z
3' end seq. 
>VSD768Z.Seq
----------GATATGTTTATGGGTTAAGACGTGCATTAATTGTATCAATTTTCATTATT
GTATGGTCAAGTAGGGTTAGTAATTTTTCTCANCGATAGAATTAAAAGAAATAAAAAAGA
TAAACGTTTTGATAAAGTTAGAAATAACCCAAAAAAATTTTTCATCTATTGGTTCATGCA
ATCATTATGGATTAATTTTACAATCACTCCTTTATTATTAGTTACTCATCAACATTTTTC
AATTTCTTTAAGGTTAATAGATTATATATTAATTTTATTATGGAGTACATTTTTTACAAT
TGAAGCTGTTGCAGATGGACAAAAAACACTATTTTTAGGTAAACCAGAGAATAAAGGTAA
ATTTATTAACCAAGGATTATGGAAGAGACTTTGTCGTCATCCAAATTATTTCTCTGAAAT
AATGATGCATTGGATAATTTATTTCATTTGTTTTAGAGGATTGGATTCTTATTGGTATAA
GTTTATTTCTTTGATTTCTCCTTTATTTATAAGTTTTTTAATGTTAAAAATTTCAACTCC
AATGATGGAAAAAATATCAGCATGAAAAATTTTCTGGAAATCCTCAATACCAAGAATATA
AAAAAT
Length of 3' end seq. 596
Connected seq. ID VSD768P
Connected seq. 
>VSD768P.Seq
GATAAAGTTAGAAATAACCCAAAAAAATTNTTCATCTATTGGTTCATGCAATCATTATGG
ATTAATTTTACAATCACTCCTTTATTATTAGTTACTCAT----------GATATGTTTAT
GGGTTAAGACGTGCATTAATTGTATCAATTTTCATTATTGTATGGTCAAGTAGGGTTAGT
AATTTTTCTCANCGATAGAATTAAAAGAAATAAAAAAGATAAACGTTTTGATAAAGTTAG
AAATAACCCAAAAAAATTTTTCATCTATTGGTTCATGCAATCATTATGGATTAATTTTAC
AATCACTCCTTTATTATTAGTTACTCATCAACATTTTTCAATTTCTTTAAGGTTAATAGA
TTATATATTAATTTTATTATGGAGTACATTTTTTACAATTGAAGCTGTTGCAGATGGACA
AAAAACACTATTTTTAGGTAAACCAGAGAATAAAGGTAAATTTATTAACCAAGGATTATG
GAAGAGACTTTGTCGTCATCCAAATTATTTCTCTGAAATAATGATGCATTGGATAATTTA
TTTCATTTGTTTTAGAGGATTGGATTCTTATTGGTATAAGTTTATTTCTTTGATTTCTCC
TTTATTTATAAGTTTTTTAATGTTAAAAATTTCAACTCCAATGATGGAAAAAATATCAGC
ATGAAAAATTTTCTGGAAATCCTCAATACCAAGAATATAAAAAAT
Length of connected seq. 695
Full length Seq ID -
Full length Seq. -
Length of full length seq. -