VSD766
Library VS
(Link to library)
Clone ID VSD766
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID VSD766E
(Link to Original site)
Representative DNA sequence
>VSD766 (VSD766Q) /CSM/VS/VSD7-C/VSD766Q.Seq.d/
CGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTC
AGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGA
AACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGG
TTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGT
CGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGT
CTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGA
ATCCTTCACTGAATACCCACCATTAGGGTCGTTTCGCCGTCAGAGATATGAGACAAACCG
TCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGA
AAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCAT
TTTATA
sequence update 2001. 3.25
Translated Amino Acid sequence
EQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAG
YSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVE
SFTEYPPLGSFRRQRYETNRRRRCHQINRQESPR*sr**ercccpikkeink*yflinsi
l


Translated Amino Acid sequence (All Frames)
Frame A:
rttprspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*kircssyrpqpsrsnpcw
lltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlkew*crygrinpissnvc*
ilh*iptirvvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*h
fi


Frame B:
EQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAG
YSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVE
SFTEYPPLGSFRRQRYETNRRRRCHQINRQESPR*sr**ercccpikkeink*yflinsi
l


Frame C:
nnsqkpvqvtm*vstlktfqskklkevwslvtpktihhkklknsllklssstiqvksmlv
thqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss*rmvmplwsn*phlvqcvln
pslnthh*grfavrdmrqtvavgvikstvkkapgkagdkkgaaapskkk*innis**iaf
y


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD766 (VSD766Q) /CSM/VS/VSD7-C/VSD766Q.Seq.d/ 1082 0.0
VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/ 1066 0.0
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/ 1066 0.0
VFN472 (VFN472Q) /CSM/VF/VFN4-C/VFN472Q.Seq.d/ 1066 0.0
VFN448 (VFN448Q) /CSM/VF/VFN4-B/VFN448Q.Seq.d/ 1066 0.0
VFN108 (VFN108Q) /CSM/VF/VFN1-A/VFN108Q.Seq.d/ 1066 0.0
VFM496 (VFM496Q) /CSM/VF/VFM4-D/VFM496Q.Seq.d/ 1066 0.0
VFI708 (VFI708Q) /CSM/VF/VFI7-A/VFI708Q.Seq.d/ 1066 0.0
VFH830 (VFH830Q) /CSM/VF/VFH8-B/VFH830Q.Seq.d/ 1066 0.0
VFH806 (VFH806Q) /CSM/VF/VFH8-A/VFH806Q.Seq.d/ 1066 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha. 767 0.0 2
X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha. 743 0.0 2
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds. 743 0.0 2
M29935|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds. 101 2e-64 5
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds. 101 2e-64 5
AL409155|AL409155.1 T7 end of clone AV0AA013A10 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 101 2e-53 5
AL408145|AL408145.1 T7 end of clone AV0AA006G11 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 101 1e-52 5
AX109696|AX109696.1 Sequence 429 from Patent WO0123604. 105 1e-52 4
AX109675|AX109675.1 Sequence 408 from Patent WO0123604. 101 5e-52 4
AX109679|AX109679.1 Sequence 412 from Patent WO0123604. 101 5e-52 4
dna update 2003. 9.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 266 1e-76
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 266 1e-76
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 266 1e-76
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo... 198 4e-55
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga... 197 1e-54
(Q00251) RecName: Full=Elongation factor 1-alpha; Short... 195 2e-54
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene... 199 3e-54
AB326305_1(AB326305|pid:none) Solea senegalensis SseEF1A4 mRNA f... 195 9e-54
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ... 194 9e-54
FN392319_1522(FN392319|pid:none) Pichia pastoris GS115 chromosom... 192 9e-54
protein update 2009. 7.30
PSORT

psg: 0.75 gvh: 0.50 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VSD766 is cyt

5' end seq. ID VSD766F
5' end seq.
>VSD766F.Seq
CGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTC
AGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGA
AACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGG
TTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGT
CGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGT
CTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGA
ATCCTTCACTGAATACCCACCATTAGGGTCGTTTCGCCGTCAGAGATATGAGACAAACCG
TCG----------
Length of 5' end seq. 423
3' end seq. ID VSD766Z
3' end seq.
>VSD766Z.Seq
----------CGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTA
AAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATC
CACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAA
TCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCA
CTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTG
CCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAA
TGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGA
GACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCG
GTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAAT
AAATAGCATTTTATA
Length of 3' end seq. 545
Connected seq. ID VSD766P
Connected seq.
>VSD766P.Seq
CGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTC
AGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGA
AACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGG
TTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGT
CGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGT
CTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGA
ATCCTTCACTGAATACCCACCATTAGGGTCGTTTCGCCGTCAGAGATATGAGACAAACCG
TCG----------CGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACG
TTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACG
ATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTC
AAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAAT
TCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTA
CTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTC
CAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATA
TGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAG
CCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTT
AATAAATAGCATTTTATA
Length of connected seq. 968
Full length Seq ID VSD766E
Full length Seq.
>VSD766E.Seq
CGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTC
AGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGA
AACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGG
TTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGT
CGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGT
CTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGA
ATCCTTCACTGAATACCCACCATTAGGGTCGTTTCGCCGTCAGAGATATGAGACAAACCG
TCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGA
AAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCAT
TTTATA
Length of full length seq. 546