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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD762
Library VS
(Link to library)
Clone ID VSD762
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14902-1
Original site URL
Representative seq. ID VSD762P
(Link to Original site)
Representative DNA sequence 
>VSD762 (VSD762Q) /CSM/VS/VSD7-C/VSD762Q.Seq.d/
CAATTTTCGATATTTTAAATTCAATTAATAATAAAAATAATAACCATTCAAATTATTATT
CATGTAAAAGACTAAAATCAAATAATAATAATAATAATAATAATTTTAGAAATAACAGCA
TTAAAAGAATTGATATTATACCATCAATGGATGTTACAATCACAGATAACAACATAATAA
TTGAAACTGAATTAGCAGGTATTTCAAAAGATAATATCGAAATCGATATTAAAGATTCGA
TTCTAACCATTCAAGGTGAAAAGAAAATCAATAATAATTACAAACAACAACAACAACAAC
ACTCAGATAAAACCAAAACAAACAATGAGCTACCTTTAATAGAAGAGAATAAAAAAGAAT
TTAGAAAATATTTATCAGAGAGATCATTTGGTAATTTTAAAAGATGTTTGGATTTAACTA
GTATTTTATATCAATTAGATTTATCAACTATTAAATCAAATTTTGAAAATGGTCTATTAA
TAATCACAATCAATAAGAAATCTGATCTATCAAATTCTTCTTTTAAAATAAATATTAATT
AATACCCATAATTTTAAATAATTATAAAAATAATATTAAAAAAAATCCTGGCTTTGTAAA
AAAAAAAAAAAAAANGGAAAAAAAAAAXXXXXXXXXXCAATTTTCGATATTTTAAATTCA
ATTAATAATAAAAATAATAACCATTCAAATTATTATTCATGTAAAAGACTAAAATCAAAT
AATAATAATAATAATAATAATTTTAGAAATAACAGCATTAAAAGAATTGATATTATACCA
TCAATGGATGTTACAATCACAGATAACAACATAATAATTGAAACTGAATTAGCAGGTATT
TCAAAAGATAATATCGAAATCGATATTAAAGATTCGATTCTAACCATTCAAGGTGAAAAG
AAAATCAATAATAATTACAAACAACAACAACAACAACACTCAGATAAAACCAAAACAAAC
AATGAGCTACCTTTAATAGAAGAGAATAAAAAAGAATTTAGAAAATATTTATCAGAGAGA
TCATTTGGTAATTTTAAAAGATGTTTGGATTTAACTAGTATTTTATATCAATTAGATTTA
TCAACTATTAAATCAAATTTTGAAAATGGTCTATTAATAATCACAATCAATAAGAAATCT
GATCTATCAAATTCTTCTTTTAAAATAAATATTAATTAATACCCATAATTTTAAATATTA
TAAAAATAATATTAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
nfryfkfn***k**pfkllfm*ktkik*******f*k*qh*kn*yytingcynhr*qhnn
*n*isryfkr*yrnry*rfdsnhsr*kenq**lqttttttlr*nqnkq*atfnrre*kri
*kifireiiw*f*kmfgfn*yfisirfiny*ikf*kwsinnhnq*ei*sikfff*nky*L
IPIILNNYKNNIKKNPGFVKKKKKXEKK---

---IFDILNSINNKNNNHSNYYSCKRLKSNNNNNNNNFRNNSIKRIDIIPSMDVTITDNN
IIIETELAGISKDNIEIDIKDSILTIQGEKKINNNYKQQQQQHSDKTKTNNELPLIEENK
KEFRKYLSERSFGNFKRCLDLTSILYQLDLSTIKSNFENGLLIITINKKSDLSNSSFKIN
IN*yp*f*il*k*y*k
Translated Amino Acid sequence (All Frames) 
Frame A:
qfsif*iqliikiitiqiiihvkd*nqiiiiiiiileitalkelilyhqwmlqsqitt**
lkln*qvfqkiisksilkirf*pfkvkrksiiitnnnnnntqikpkqtmsyl**krikkn
leniyqrdhlvilkdvwi*lvfyin*iyqllnqilkmvy**sqsirnliyqilllk*ili
nthnfk*l*k*y*kkswlckkkkkxgkkk---

---qfsif*iqliikiitiqiiihvkd*nqiiiiiiiileitalkelilyhqwmlqsqit
t**lkln*qvfqkiisksilkirf*pfkvkrksiiitnnnnnntqikpkqtmsyl**kri
kknleniyqrdhlvilkdvwi*lvfyin*iyqllnqilkmvy**sqsirnliyqilllk*
ilinthnfkyyknnikk

Frame B:
nfryfkfn***k**pfkllfm*ktkik*******f*k*qh*kn*yytingcynhr*qhnn
*n*isryfkr*yrnry*rfdsnhsr*kenq**lqttttttlr*nqnkq*atfnrre*kri
*kifireiiw*f*kmfgfn*yfisirfiny*ikf*kwsinnhnq*ei*sikfff*nky*L
IPIILNNYKNNIKKNPGFVKKKKKXEKK---

---nfryfkfn***k**pfkllfm*ktkik*******f*k*qh*kn*yytingcynhr*q
hnn*n*isryfkr*yrnry*rfdsnhsr*kenq**lqttttttlr*nqnkq*atfnrre*
kri*kifireiiw*f*kmfgfn*yfisirfiny*ikf*kwsinnhnq*ei*sikfff*nk
y*lipiilniikiilkk

Frame C:
ifdilnsinnknnnhsnyysckrlksnnnnnnnnfrnnsikridiipsmdvtitdnniii
etelagiskdnieidikdsiltiqgekkinnnykqqqqqhsdktktnnelplieenkkef
rkylsersfgnfkrcldltsilyqldlstiksnfenglliitinkksdlsnssfkinin*
yp*f*iiikiilkkilal*kkkkkxkkk---

---IFDILNSINNKNNNHSNYYSCKRLKSNNNNNNNNFRNNSIKRIDIIPSMDVTITDNN
IIIETELAGISKDNIEIDIKDSILTIQGEKKINNNYKQQQQQHSDKTKTNNELPLIEENK
KEFRKYLSERSFGNFKRCLDLTSILYQLDLSTIKSNFENGLLIITINKKSDLSNSSFKIN
IN*yp*f*il*k*y*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD762 (VSD762Q) /CSM/VS/VSD7-C/VSD762Q.Seq.d/                        432   e-120
VSG329 (VSG329Q) /CSM/VS/VSG3-B/VSG329Q.Seq.d/                        426   e-118
VSC209 (VSC209Q) /CSM/VS/VSC2-A/VSC209Q.Seq.d/                        414   e-114
VSK460 (VSK460Q) /CSM/VS/VSK4-C/VSK460Q.Seq.d/                        113   6e-24
VSI531 (VSI531Q) /CSM/VS/VSI5-B/VSI531Q.Seq.d/                        109   1e-22
VSI335 (VSI335Q) /CSM/VS/VSI3-B/VSI335Q.Seq.d/                        109   1e-22
VSI332 (VSI332Q) /CSM/VS/VSI3-B/VSI332Q.Seq.d/                        109   1e-22
VSH432 (VSH432Q) /CSM/VS/VSH4-B/VSH432Q.Seq.d/                        109   1e-22
VSE504 (VSE504Q) /CSM/VS/VSE5-A/VSE504Q.Seq.d/                        109   1e-22
VSB614 (VSB614Q) /CSM/VS/VSB6-A/VSB614Q.Seq.d/                        109   1e-22
own update 2003.10.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264537) Dictyostelium discoideum vegetative cDNA clone:VS...   369   0.0    3
(AU264536) Dictyostelium discoideum vegetative cDNA clone:VS...   369   0.0    3
(AU266320) Dictyostelium discoideum vegetative cDNA clone:VS...   361   0.0    3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   369   0.0    8
(AU266319) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-175  3
(AU262396) Dictyostelium discoideum vegetative cDNA clone:VS...   353   e-117  2
(AC116967) Dictyostelium discoideum chromosome 2 map 5481549...   125   e-100  6
(AC116955) Dictyostelium discoideum chromosome 2 map 5455881...   113   3e-93  7
(AU263152) Dictyostelium discoideum vegetative cDNA clone:VS...   109   9e-46  3
(AU268839) Dictyostelium discoideum vegetative cDNA clone:VS...   109   9e-46  3
dna update 2009. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I25) RecName: Full=Small heat shock protein hspG1;  &AC11630...   248   3e-64
(Q86KF5) RecName: Full=Small heat shock protein hspG9;  &AC11696...   127   6e-28
(Q8MPA7) RecName: Full=Small heat shock protein hspG5;  &AC11695...   122   2e-26
AC116967_6(AC116967|pid:none) Dictyostelium discoideum chromosom...   122   3e-26
(Q550E9) RecName: Full=Small heat shock protein hspG8;                117   6e-25
(Q552K9) RecName: Full=Small heat shock protein hspG2;                116   2e-24
(Q551G1) RecName: Full=Small heat shock protein hspG4;                115   4e-24
AC116550_9(AC116550|pid:none) Dictyostelium discoideum chromosom...   103   1e-20
AC116967_4(AC116967|pid:none) Dictyostelium discoideum chromosom...    91   1e-16
(Q550E3) RecName: Full=Small heat shock protein hspG11;                59   5e-07
protein update 2009. 7.30
PSORT 

 psg: 0.46  gvh: 0.01  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.11  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSD762 is nuc
5' end seq. ID VSD762F
5' end seq. 
>VSD762F.Seq
CAATTTTCGATATTTTAAATTCAATTAATAATAAAAATAATAACCATTCAAATTATTATT
CATGTAAAAGACTAAAATCAAATAATAATAATAATAATAATAATTTTAGAAATAACAGCA
TTAAAAGAATTGATATTATACCATCAATGGATGTTACAATCACAGATAACAACATAATAA
TTGAAACTGAATTAGCAGGTATTTCAAAAGATAATATCGAAATCGATATTAAAGATTCGA
TTCTAACCATTCAAGGTGAAAAGAAAATCAATAATAATTACAAACAACAACAACAACAAC
ACTCAGATAAAACCAAAACAAACAATGAGCTACCTTTAATAGAAGAGAATAAAAAAGAAT
TTAGAAAATATTTATCAGAGAGATCATTTGGTAATTTTAAAAGATGTTTGGATTTAACTA
GTATTTTATATCAATTAGATTTATCAACTATTAAATCAAATTTTGAAAATGGTCTATTAA
TAATCACAATCAATAAGAAATCTGATCTATCAAATTCTTCTTTTAAAATAAATATTAATT
AATACCCATAATTTTAAATAATTATAAAAATAATATTAAAAAAAATCCTGGCTTTGTAAA
AAAAAAAAAAAAAANGGAAAAAAAAAA----------
Length of 5' end seq. 627
3' end seq. ID VSD762Z
3' end seq. 
>VSD762Z.Seq
----------CAATTTTCGATATTTTAAATTCAATTAATAATAAAAATAATAACCATTCA
AATTATTATTCATGTAAAAGACTAAAATCAAATAATAATAATAATAATAATAATTTTAGA
AATAACAGCATTAAAAGAATTGATATTATACCATCAATGGATGTTACAATCACAGATAAC
AACATAATAATTGAAACTGAATTAGCAGGTATTTCAAAAGATAATATCGAAATCGATATT
AAAGATTCGATTCTAACCATTCAAGGTGAAAAGAAAATCAATAATAATTACAAACAACAA
CAACAACAACACTCAGATAAAACCAAAACAAACAATGAGCTACCTTTAATAGAAGAGAAT
AAAAAAGAATTTAGAAAATATTTATCAGAGAGATCATTTGGTAATTTTAAAAGATGTTTG
GATTTAACTAGTATTTTATATCAATTAGATTTATCAACTATTAAATCAAATTTTGAAAAT
GGTCTATTAATAATCACAATCAATAAGAAATCTGATCTATCAAATTCTTCTTTTAAAATA
AATATTAATTAATACCCATAATTTTAAATATTATAAAAATAATATTAAAAAAA
Length of 3' end seq. 583
Connected seq. ID VSD762P
Connected seq. 
>VSD762P.Seq
CAATTTTCGATATTTTAAATTCAATTAATAATAAAAATAATAACCATTCAAATTATTATT
CATGTAAAAGACTAAAATCAAATAATAATAATAATAATAATAATTTTAGAAATAACAGCA
TTAAAAGAATTGATATTATACCATCAATGGATGTTACAATCACAGATAACAACATAATAA
TTGAAACTGAATTAGCAGGTATTTCAAAAGATAATATCGAAATCGATATTAAAGATTCGA
TTCTAACCATTCAAGGTGAAAAGAAAATCAATAATAATTACAAACAACAACAACAACAAC
ACTCAGATAAAACCAAAACAAACAATGAGCTACCTTTAATAGAAGAGAATAAAAAAGAAT
TTAGAAAATATTTATCAGAGAGATCATTTGGTAATTTTAAAAGATGTTTGGATTTAACTA
GTATTTTATATCAATTAGATTTATCAACTATTAAATCAAATTTTGAAAATGGTCTATTAA
TAATCACAATCAATAAGAAATCTGATCTATCAAATTCTTCTTTTAAAATAAATATTAATT
AATACCCATAATTTTAAATAATTATAAAAATAATATTAAAAAAAATCCTGGCTTTGTAAA
AAAAAAAAAAAAAANGGAAAAAAAAAA----------CAATTTTCGATATTTTAAATTCA
ATTAATAATAAAAATAATAACCATTCAAATTATTATTCATGTAAAAGACTAAAATCAAAT
AATAATAATAATAATAATAATTTTAGAAATAACAGCATTAAAAGAATTGATATTATACCA
TCAATGGATGTTACAATCACAGATAACAACATAATAATTGAAACTGAATTAGCAGGTATT
TCAAAAGATAATATCGAAATCGATATTAAAGATTCGATTCTAACCATTCAAGGTGAAAAG
AAAATCAATAATAATTACAAACAACAACAACAACAACACTCAGATAAAACCAAAACAAAC
AATGAGCTACCTTTAATAGAAGAGAATAAAAAAGAATTTAGAAAATATTTATCAGAGAGA
TCATTTGGTAATTTTAAAAGATGTTTGGATTTAACTAGTATTTTATATCAATTAGATTTA
TCAACTATTAAATCAAATTTTGAAAATGGTCTATTAATAATCACAATCAATAAGAAATCT
GATCTATCAAATTCTTCTTTTAAAATAAATATTAATTAATACCCATAATTTTAAATATTA
TAAAAATAATATTAAAAAAA
Length of connected seq. 1210
Full length Seq ID -
Full length Seq. -
Length of full length seq. -