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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD760
Library VS
(Link to library)
Clone ID VSD760
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10669-1|Contig-U16488-1
Original site URL
Representative seq. ID VSD760P
(Link to Original site)
Representative DNA sequence 
>VSD760 (VSD760Q) /CSM/VS/VSD7-C/VSD760Q.Seq.d/
GGCTAAAGTAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATA
AATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTT
GTAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTNGTCATTTGCAGNTCATGTT
CAACTGTNATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAA
GACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAA
TAGAAAATAAACAATAAAAAAAAATGCTNTGTGCAGAGTAATAATNTAAAAAANAAAXXX
XXXXXXXGCATATATATATATTTAAAAATGTCAAATCACCAATTAGAAGAAAANCAAAAT
TCAATTTTAAATAAATTAAAATCACTTGAAGAAAGATTAAATAATATTACCCCACCTTCA
ATAATAACAGATAATCAAAAAAGAATTGGTAAAGTTTGTGAAGAAATTGGTTTGGAACAT
GAATTAGTTAGAGTACCATCACCATATTATACATGGACATTAGACCAACGTGCAAGTTAT
TTAGATGCATTTTCACCAGAAATATTTATTAAAAAGTATTATTTTAGAAAATACAGAATG
TACAAATACAGATACATCAATTCCAACTAATAGTAGATAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
g*snvviyysqasnpknvnin*rdwskhqtpslwistvtvvepslpfshtpktxsfaxhv
qlxllnqlvvvleslpvvv*dknptkvtvqshqrfqfff**KINNKKKCXVQSNNXKXK-
--

---IYIYLKMSNHQLEEXQNSILNKLKSLEERLNNITPPSIITDNQKRIGKVCEEIGLEH
ELVRVPSPYYTWTLDQRASYLDAFSPEIFIKKYYFRKYRMYKYRYINSN***i
Translated Amino Acid sequence (All Frames) 
Frame A:
g*snvviyysqasnpknvnin*rdwskhqtpslwistvtvvepslpfshtpktxsfaxhv
qlxllnqlvvvleslpvvv*dknptkvtvqshqrfqfff**KINNKKKCXVQSNNXKXK-
--

---ayiyi*kcqitn*kkxkiqf*in*nhlkkd*iilphlq**qiikkelvkfvkklvwn
mn*leyhhhiihgh*tnvqvi*mhfhqkyllksiilentectntdtsiptnsry

Frame B:
akvtw*fiipkhrirkt*t*ikeigpstklllygyqlsrl*nhhyrfltrpkrxhlqxmf
ncxcstnwwsc*nhcrlsfktkirlrlpsnrtnafnfffnrk*tikknaxcrvix*kx--
-

---hiyifknvkspirrkxkfnfk*ikit*rkik*yyptfnnnr*skknw*sl*rnwfgt
*is*stitilymdirptcklfrciftrniy*kvlf*kiqnvqiqihqfqlivd

Frame C:
lk*rgdllfpsiesekrkhklkrlvqapnsffmdinchgcrtittvfshaqnvvicxscs
tviaqptggraritagcrlrqksd*gyrpiaptlsifflienkq*kkmlcae**xkkx--
-

---IYIYLKMSNHQLEEXQNSILNKLKSLEERLNNITPPSIITDNQKRIGKVCEEIGLEH
ELVRVPSPYYTWTLDQRASYLDAFSPEIFIKKYYFRKYRMYKYRYINSN***i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD760 (VSD760Q) /CSM/VS/VSD7-C/VSD760Q.Seq.d/                        559   e-158
VSG713 (VSG713Q) /CSM/VS/VSG7-A/VSG713Q.Seq.d/                        543   e-153
VSF541 (VSF541Q) /CSM/VS/VSF5-B/VSF541Q.Seq.d/                        543   e-153
VFA449 (VFA449Q) /CSM/VF/VFA4-C/VFA449Q.Seq.d/                        543   e-153
VSF242 (VSF242Q) /CSM/VS/VSF2-B/VSF242Q.Seq.d/                        539   e-152
VSJ645 (VSJ645Q) /CSM/VS/VSJ6-B/VSJ645Q.Seq.d/                        537   e-152
VSJ164 (VSJ164Q) /CSM/VS/VSJ1-C/VSJ164Q.Seq.d/                        537   e-152
VSI793 (VSI793Q) /CSM/VS/VSI7-D/VSI793Q.Seq.d/                        537   e-152
VSI587 (VSI587Q) /CSM/VS/VSI5-D/VSI587Q.Seq.d/                        537   e-152
VSI480 (VSI480Q) /CSM/VS/VSI4-D/VSI480Q.Seq.d/                        537   e-152
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264533) Dictyostelium discoideum vegetative cDNA clone:VS...   553   e-165  3
(AU284532) Dictyostelium discoideum gamete cDNA clone:FC-BB1...   535   e-160  3
(BJ410690) Dictyostelium discoideum cDNA clone:ddv1b14, 5' e...   535   e-160  3
(AU265388) Dictyostelium discoideum vegetative cDNA clone:VS...   535   e-160  3
(AU266744) Dictyostelium discoideum vegetative cDNA clone:VS...   535   e-160  3
(AU264925) Dictyostelium discoideum vegetative cDNA clone:VS...   539   e-158  3
(AU270250) Dictyostelium discoideum vegetative cDNA clone:VS...   535   e-158  3
(AU266735) Dictyostelium discoideum vegetative cDNA clone:VS...   535   e-158  3
(AU269302) Dictyostelium discoideum vegetative cDNA clone:VS...   529   e-158  3
(AU263307) Dictyostelium discoideum vegetative cDNA clone:VS...   527   e-157  3
dna update 2009. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF082617_1(EF082617|pid:none) Picea sitchensis clone WS0299_E22 ...   124   3e-27
AY857484_1(AY857484|pid:none) Suberites domuncula S27 mRNA, comp...   123   5e-27
BT051468_1(BT051468|pid:none) Medicago truncatula clone MTYF1_F2...   122   1e-26
DQ241850_1(DQ241850|pid:none) Solanum tuberosum clone 187G01 rib...   121   2e-26
BT053528_1(BT053528|pid:none) Medicago truncatula clone MTYFP_FQ...   121   2e-26
EF146224_1(EF146224|pid:none) Populus trichocarpa clone WS0116_F...   120   3e-26
DQ673404_1(DQ673404|pid:none) Diaphorina citri putative ribosoma...   120   5e-26
(P24051) RecName: Full=40S ribosomal protein S27-like protein;  ...   120   5e-26
EF179453_1(EF179453|pid:none) Xenopsylla cheopis clone XC-86 rib...   120   5e-26
AX970742_1(AX970742|pid:none) Sequence 1545 from Patent EP1104808.    120   5e-26
protein update 2009. 7.30
PSORT 

 psg: 0.67  gvh: 0.21  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VSD760 is nuc
5' end seq. ID VSD760F
5' end seq. 
>VSD760F.Seq
GGCTAAAGTAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATA
AATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTT
GTAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTNGTCATTTGCAGNTCATGTT
CAACTGTNATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAA
GACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAA
TAGAAAATAAACAATAAAAAAAAATGCTNTGTGCAGAGTAATAATNTAAAAAANAAA---
-------
Length of 5' end seq. 357
3' end seq. ID VSD760Z
3' end seq. 
>VSD760Z.Seq
----------GCATATATATATATTTAAAAATGTCAAATCACCAATTAGAAGAAAANCAA
AATTCAATTTTAAATAAATTAAAATCACTTGAAGAAAGATTAAATAATATTACCCCACCT
TCAATAATAACAGATAATCAAAAAAGAATTGGTAAAGTTTGTGAAGAAATTGGTTTGGAA
CATGAATTAGTTAGAGTACCATCACCATATTATACATGGACATTAGACCAACGTGCAAGT
TATTTAGATGCATTTTCACCAGAAATATTTATTAAAAAGTATTATTTTAGAAAATACAGA
ATGTACAAATACAGATACATCAATTCCAACTAATAGTAGATAT
Length of 3' end seq. 333
Connected seq. ID VSD760P
Connected seq. 
>VSD760P.Seq
GGCTAAAGTAACGTGGTGATTTATTATTCCCAAGCATCGAATCCGAAAAACGTAAACATA
AATTAAAGAGATTGGTCCAAGCACCAAACTCCTTCTTTATGGATATCAACTGTCACGGTT
GTAGAACCATCACTACCGTTTTCTCACACGCCCAAAACGTNGTCATTTGCAGNTCATGTT
CAACTGTNATTGCTCAACCAACTGGTGGTCGTGCTAGAATCACTGCCGGTTGTCGTTTAA
GACAAAAATCCGACTAAGGTTACCGTCCAATCGCACCAACGCTTTCAATTTTTTTTTTAA
TAGAAAATAAACAATAAAAAAAAATGCTNTGTGCAGAGTAATAATNTAAAAAANAAA---
-------GCATATATATATATTTAAAAATGTCAAATCACCAATTAGAAGAAAANCAAAAT
TCAATTTTAAATAAATTAAAATCACTTGAAGAAAGATTAAATAATATTACCCCACCTTCA
ATAATAACAGATAATCAAAAAAGAATTGGTAAAGTTTGTGAAGAAATTGGTTTGGAACAT
GAATTAGTTAGAGTACCATCACCATATTATACATGGACATTAGACCAACGTGCAAGTTAT
TTAGATGCATTTTCACCAGAAATATTTATTAAAAAGTATTATTTTAGAAAATACAGAATG
TACAAATACAGATACATCAATTCCAACTAATAGTAGATAT
Length of connected seq. 690
Full length Seq ID -
Full length Seq. -
Length of full length seq. -