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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD757
Library VS
(Link to library)
Clone ID VSD757
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06597-1
Original site URL
Representative seq. ID VSD757P
(Link to Original site)
Representative DNA sequence 
>VSD757 (VSD757Q) /CSM/VS/VSD7-C/VSD757Q.Seq.d/
TTTTTTTTTTAAAAAATTTTTTNAAAAAAAAAAAAAANGNTTTTNNGNTTNAAAAAAAAN
TTNCCNTTTTTTTNNNNGGGGGGGNTTTTTTNNNNAAAAAAANTNAAAAAAAAAANGGGG
GGGGNTTTTTANNGGGAAANAAAAANNNTTTTGGGGGGGGGGGNTTTNNAAAAAAAAAAA
AAAAAAAATTTTTTNCCCCCCCNAAAAAAAAAXXXXXXXXXXGNAAAAGAAAAAAGGGGA
CATTATTGTTATCAAAAAAACTTTACCGTNCATTTGAATAGGNTGTATTATTAATTAAAT
AAATATAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
FFFKKFFXKKKKXFXXXKKXXXFFXXGGFFXXKXXKKKXGGXFXGKXKXFWGGGXXKKKK
KKIFXPPXKK---

---XKEKRGHYCYQKNFTVHLNRXYY*lnky
Translated Amino Acid sequence (All Frames) 
Frame A:
fff*kifxkkkkxxxxxkkxxpffxxggxfxxkkxkkkxggxfxxexkxxlgggxxxkkk
kknfxppxkk---

---XKEKRGHYCYQKNFTVHLNRXYY*lnky

Frame B:
FFFKKFFXKKKKXFXXXKKXXXFFXXGGFFXXKXXKKKXGGXFXGKXKXFWGGGXXKKKK
KKIFXPPXKK---

---xkkkgdiivikktlpxi*igciin*ini

Frame C:
fflknfxkkkkxxfxxxkkxxxfxxggxfxxkkxxkkxgggflxgxkxxfggggfxkkkk
kkffxppkkk---

---krkkgtlllskklyrxfe*xvllik*i*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD757 (VSD757Q) /CSM/VS/VSD7-C/VSD757Q.Seq.d/                        113   2e-24
AHQ612 (AHQ612Q) /CSM/AH/AHQ6-A/AHQ612Q.Seq.d/                         42   0.005
SSI701 (SSI701Q) /CSM/SS/SSI7-A/SSI701Q.Seq.d/                         38   0.075
SSH317 (SSH317Q) /CSM/SS/SSH3-A/SSH317Q.Seq.d/                         38   0.075
SSG831 (SSG831Q) /CSM/SS/SSG8-B/SSG831Q.Seq.d/                         38   0.075
SSG252 (SSG252Q) /CSM/SS/SSG2-C/SSG252Q.Seq.d/                         38   0.075
SSF262 (SSF262Q) /CSM/SS/SSF2-C/SSF262Q.Seq.d/                         38   0.075
SSF113 (SSF113Q) /CSM/SS/SSF1-A/SSF113Q.Seq.d/                         38   0.075
SLJ294 (SLJ294Q) /CSM/SL/SLJ2-D/SLJ294Q.Seq.d/                         38   0.075
CHO361 (CHO361Q) /CSM/CH/CHO3-C/CHO361Q.Seq.d/                         38   0.075
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264528) Dictyostelium discoideum vegetative cDNA clone:VS...    84   7e-15  2
(AP009972) Lotus japonicus genomic DNA, chromosome 3, clone:...    46   0.78   1
(AC232587) Brassica rapa subsp. pekinensis clone KBrB027J02,...    46   0.78   1
(AC174391) Aotus nancymaae clone CH258-266P13, WORKING DRAFT...    46   0.78   1
(FK920346) EST_lsal_evj_933130 lsalevj mixed_tissue_mixed_st...    46   0.78   1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    46   0.78   1
(BX571794) Zebrafish DNA sequence from clone DKEY-246M18 in ...    44   3.1    1
(AP002029) Arabidopsis thaliana genomic DNA, chromosome 5, B...    44   3.1    1
(AB025605) Arabidopsis thaliana genomic DNA, chromosome 5, B...    44   3.1    1
(AB035880) Chaitoregma tattakana mitochondrial genes for sma...    44   3.1    1
dna update 2009. 7.27
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 198,551,664
protein update 2009. 7.30
PSORT 

 psg: 0.52  gvh: 0.39  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.61  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for VSD757 is nuc
5' end seq. ID VSD757F
5' end seq. 
>VSD757F.Seq
TTTTTTTTTTAAAAAATTTTTTNAAAAAAAAAAAAAANGNTTTTNNGNTTNAAAAAAAAN
TTNCCNTTTTTTTNNNNGGGGGGGNTTTTTTNNNNAAAAAAANTNAAAAAAAAAANGGGG
GGGGNTTTTTANNGGGAAANAAAAANNNTTTTGGGGGGGGGGGNTTTNNAAAAAAAAAAA
AAAAAAAATTTTTTNCCCCCCCNAAAAAAAAA----------
Length of 5' end seq. 212
3' end seq. ID VSD757Z
3' end seq. 
>VSD757Z.Seq
----------GNAAAAGAAAAAAGGGGACATTATTGTTATCAAAAAAACTTTACCGTNCA
TTTGAATAGGNTGTATTATTAATTAAATAAATATAA
Length of 3' end seq. 86
Connected seq. ID VSD757P
Connected seq. 
>VSD757P.Seq
TTTTTTTTTTAAAAAATTTTTTNAAAAAAAAAAAAAANGNTTTTNNGNTTNAAAAAAAAN
TTNCCNTTTTTTTNNNNGGGGGGGNTTTTTTNNNNAAAAAAANTNAAAAAAAAAANGGGG
GGGGNTTTTTANNGGGAAANAAAAANNNTTTTGGGGGGGGGGGNTTTNNAAAAAAAAAAA
AAAAAAAATTTTTTNCCCCCCCNAAAAAAAAA----------GNAAAAGAAAAAAGGGGA
CATTATTGTTATCAAAAAAACTTTACCGTNCATTTGAATAGGNTGTATTATTAATTAAAT
AAATATAA
Length of connected seq. 298
Full length Seq ID -
Full length Seq. -
Length of full length seq. -