NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD744
Library VS
(Link to library)
Clone ID VSD744
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12019-1
Original site URL
Representative seq. ID VSD744E
(Link to Original site)
Representative DNA sequence 
>VSD744 (VSD744Q) /CSM/VS/VSD7-B/VSD744Q.Seq.d/
GTTAGTCCAATGTGTCAATATTCAAGTAAAGATGGATATTTTAATGATTTTCATTTCGGT
CATTATACATCATTTGCAAAGGGTGGTAGTGGTTTAATAGTTATTGAAGCAACAGGTGTT
GTACCAGAGGGACGTATTACATATGGTTGTACTGGTCTTTGGAAAGATTCTCAAATTGAA
GGTTTAAAAAGAATCGTTGATTTCTCACATGAATTTGAAGCAAAAGTTGGTATCCAATTA
GCTCATGCAGGTCGTAAAGCATCTAACGAGGTCCCATATTTAGATGGAGCTAGAAATTCC
CATCTTACAATTCCATTCGATCATCCAAGTGGTAATGGTTGGAAAGTGTATGGTGCATCA
CCAATCCCATGGAATGAAGTTATGGCAGTACCAATTGAAATGACAATTCAAGATATTGAA
AATGTAATTGAATCATTCAAATCTGCAGCTGTTAGATGCATTAAAGCCTGGTTTGGATTT
CATTGAAATTCACGGTGCACACGGATACTTGATTAGTTCATTCTTATCAACAACTTCAAA
TAAACGTACTGATAGCTATGGTGGTTCATTTGAGGGTAGAGTTAAATTATTAATAGAAGT
TGTTAAAGCTGTCCGTTCAGTTTGGACAACTGAAAAGCCATTAGCCGTTAGAATCTCTGC
TGATGAATGTGTTAGAGAAGCTGATGGAATAACTGAATCACCTTTGAATGGGTGGGGAAT
TAATGATTCAATTAAATTGGCATCAATATTGGAACAGTATGATGTCGATTTATTGGATCC
ATCAAGTGGTGGTAATAATAAACTTCAAAATATTAAACCAGTACCACTTTATCATGTACC
ATACTCTAGTGCAATTAAAAATTCTATTAAAGAACGTTCTGGTAAATTATTGGTTTCAGC
AGTTGGATTAATTGATAATGCTGAAAATTCAGAATCAATTTTACAATCTGGAAGTGCAGA
TTTGATTTTCTTGGGTCGTCCATTCCTTAGAAATCCATTCTTACCTGTTGAATTTGCTAA
ACAATTAAATTTAAAAATTGATTATGCTCCACAATATCAACATGCAAGAAATTCATCATT
ACTTTATTCTAGTAAATAAATAAATAAAAATTTTAT
sequence update 2001. 3.25
Translated Amino Acid sequence 
lvqcvniqvkmdilmifisviihhlqrvvvv**llkqqvlyqrdvlhmvvlvfgkilklk
v*keslishmnlkqklvsn*lmqvvkhltrshi*meleipilqfhsiiqvvmvgkcmvhh
qshgmklwqyqlk*qfkilkm*LNHSNLQLLDALKPGLDFIEIHGAHGYLISSFLSTTSN
KRTDSYGGSFEGRVKLLIEVVKAVRSVWTTEKPLAVRISADECVREADGITESPLNGWGI
NDSIKLASILEQYDVDLLDPSSGGNNKLQNIKPVPLYHVPYSSAIKNSIKERSGKLLVSA
VGLIDNAENSESILQSGSADLIFLGRPFLRNPFLPVEFAKQLNLKIDYAPQYQHARNSSL
LYSSK*inknf
Translated Amino Acid sequence (All Frames) 
Frame A:
vspmcqysskdgyfndfhfghytsfakggsglivieatgvvpegritygctglwkdsqie
glkrivdfshefeakvgiqlahagrkasnevpyldgarnshltipfdhpsgngwkvygas
pipwnevmavpiemtiqdienviesfksaavrcikawfgfh*nsrctrild*filinnfk
*ty**lwwfi*g*s*iinrsc*scpfsldn*kaisr*nlc**mc*rs*wnn*itfewvgn
**fn*iginigtv*crfigsikww***tsky*tsttlsctil*cn*kfy*rtfw*iigfs
swin**c*kfrinftiwkcrfdflgssip*ksiltc*ic*tikfkn*lcstistckkfii
tlf**ink*kfy


Frame B:
lvqcvniqvkmdilmifisviihhlqrvvvv**llkqqvlyqrdvlhmvvlvfgkilklk
v*keslishmnlkqklvsn*lmqvvkhltrshi*meleipilqfhsiiqvvmvgkcmvhh
qshgmklwqyqlk*qfkilkm*LNHSNLQLLDALKPGLDFIEIHGAHGYLISSFLSTTSN
KRTDSYGGSFEGRVKLLIEVVKAVRSVWTTEKPLAVRISADECVREADGITESPLNGWGI
NDSIKLASILEQYDVDLLDPSSGGNNKLQNIKPVPLYHVPYSSAIKNSIKERSGKLLVSA
VGLIDNAENSESILQSGSADLIFLGRPFLRNPFLPVEFAKQLNLKIDYAPQYQHARNSSL
LYSSK*inknf


Frame C:
*snvsifk*rwif**fsfrslyiickgw*wfnsy*snrcctrgtyyiwlywslerfsn*r
fkknr*flt*i*skswypisscrs*si*rgpifrws*kfpsynsirsskw*wlesvwcit
npme*sygstn*ndnsry*kcn*iiqicsc*mh*slvwislkftvhtdt*lvhsyqqlqi
nvliamvvhlrvelny**kllklsvqfgqlksh*plesllmnvleklme*lnhl*mggel
miqlnwhqywnsmmsiywihqvvviinfkilnqyhfimyhtlvqlkillknvlvnywfqq
ld*limlkiqnqfynlevqi*fswvvhsleihsyllnllnn*i*klimlhninmqeihhy
filvnk*ikil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD744 (VSD744Q) /CSM/VS/VSD7-B/VSD744Q.Seq.d/                       2212   0.0
VSF365 (VSF365Q) /CSM/VS/VSF3-C/VSF365Q.Seq.d/                       1782   0.0
VSI153 (VSI153Q) /CSM/VS/VSI1-C/VSI153Q.Seq.d/                       1126   0.0
CHC424 (CHC424Q) /CSM/CH/CHC4-A/CHC424Q.Seq.d/                         60   8e-08
SFH454 (SFH454Q) /CSM/SF/SFH4-C/SFH454Q.Seq.d/                         52   2e-05
SFL110 (SFL110Q) /CSM/SF/SFL1-A/SFL110Q.Seq.d/                         50   7e-05
CFI108 (CFI108Q) /CSM/CF/CFI1-A/CFI108Q.Seq.d/                         50   7e-05
CFG462 (CFG462Q) /CSM/CF/CFG4-C/CFG462Q.Seq.d/                         50   7e-05
CFG315 (CFG315Q) /CSM/CF/CFG3-A/CFG315Q.Seq.d/                         50   7e-05
CFF271 (CFF271Q) /CSM/CF/CFF2-C/CFF271Q.Seq.d/                         50   7e-05
own update 2003. 7. 6
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.  1271  0.0  3
AC092951|AC092951.1 Homo sapiens chromosome 3q clone RP11-331O6, WORKING DRAFT SEQUENCE, 18 unordered pieces.    48  7e-04  5
AJ426053|AJ426053.1 Dictyostelium discoideum mRNA for EB1 protein.    48  0.001  2
AP003187|AP003187.2 Clostridium perfringens DNA, complete genome, section 3/10.    38  0.003  7
AC114106|AC114106.4 Rattus norvegicus clone CH230-21N11, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38  0.024  7
AX345507|AX345507.1 Sequence 578 from Patent WO0200928.           34  0.033  4
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.    38  0.039  6
AC103611|AC103611.2 Mus musculus clone RP23-343A4, WORKING DRAFT SEQUENCE, 11 unordered pieces.    50  0.047  3
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          40  0.052  4
CC762032|CC762032.1 CH240_1P13.TJ CHORI-240 Bos taurus genomic clone CH240_1P13, genomic survey sequence.    36  0.057  2
dna update 2003. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117072_14(AC117072|pid:none) Dictyostelium discoideum chromoso...   412   0.0
CP000473_670(CP000473|pid:none) Solibacter usitatus Ellin6076, c...   165   2e-73
AM920431_636(AM920431|pid:none) Penicillium chrysogenum Wisconsi...   151   5e-71
CP000359_959(CP000359|pid:none) Deinococcus geothermalis DSM 113...   164   8e-71
AM270045_8(AM270045|pid:none) Aspergillus niger contig An03c0040...   151   4e-68
AP007155_190(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   150   2e-67
CP000121_147(CP000121|pid:none) Anabaena variabilis ATCC 29413 p...   141   4e-67
CP001032_3793(CP001032|pid:none) Opitutus terrae PB90-1, complet...   145   2e-65
AM270120_1(AM270120|pid:none) Aspergillus niger contig An07c0020...   156   2e-65
AY462111_12(AY462111|pid:none) Pleurotus djamor ketopantoate red...   140   3e-65
protein update 2009. 7.30
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSD744 is cyt
5' end seq. ID VSD744F
5' end seq. 
>VSD744F.Seq
GTTAGTCCAATGTGTCAATATTCAAGTAAAGATGGATATTTTAATGATTTTCATTTCGGT
CATTATACATCATTTGCAAAGGGTGGTAGTGGTTTAATAGTTATTGAAGCAACAGGTGTT
GTACCAGAGGGACGTATTACATATGGTTGTACTGGTCTTTGGAAAGATTCTCAAATTGAA
GGTTTAAAAAGAATCGTTGATTTCTCACATGAATTTGAAGCAAAAGTTGGTATCCAATTA
GCTCATGCAGGTCGTAAAGCATCTAACGAGGTCCCATATTTAGATGGAGCTAGAAATTCC
CATCTTACAATTCCATTCGATCATCCAAGTGGTAATGGTTGGAAAGTGTATGGTGCATCA
CCAATCCCATGGAATGAAGTTATGGCAGTACCAATTGAAATGACAATTCAAGATATTGAA
AATGTAATTGAATCATTCAAATCTGCAGCTGTTAGATGCATTAAAGCCTGGTTTGGATTT
CATTGAAATTCACGGTGCACACGGATACTTGATTAGTTCATTCTTATCAA----------
Length of 5' end seq. 530
3' end seq. ID VSD744Z
3' end seq. 
>VSD744Z.Seq
----------GTTTGGATTTCATTGAAATTCACGGTGCACACGNATACTTGATTAGTTCA
TTCTTATCAACAACTTCAAATAAACGTACTGATAGCTATGGTGGTTCATTTGAGGGTAGA
GTTAAATTATTAATAGAAGTTGTTAAAGCTGTCCGTTCAGTTTGGACAACTGAAAAGCCA
TTAGCCGTTAGAATCTCTGCTGATGAATGTGTTAGAGAAGCTGATGGAATAACTGAATCA
CCTTTGAATGGGTGGGGAATTAATGATTCAATTAAATTGGCATCAATATTGGAACAGTAT
GATGTCGATTTATTGGATCCATCAAGTGGTGGTAATAATAAACTTCAAAATATTAAACCA
GTACCACTTTATCATGTACCATACTCTAGTGCAATTAAAAATTCTATTAAAGAACGTTCT
GGTAAATTATTGGTTTCAGCAGTTGGATTAATTGATAATGCTGAAAATTCAGAATCAATT
TTACAATCTGGAAGTGCAGATTTGATTTTCTTGGGTCGTCCATTCCTTAGAAATCCATTC
TTACCTGTTGAATTTGCTAAACAATTAAATTTAAAAATTGATTATGCTCCACAATATCAA
CATGCAAGAAATTCATCATTACTTTATTCTAGTAAATAAATAAATAAAAATTTTAT
Length of 3' end seq. 646
Connected seq. ID VSD744P
Connected seq. 
>VSD744P.Seq
GTTAGTCCAATGTGTCAATATTCAAGTAAAGATGGATATTTTAATGATTTTCATTTCGGT
CATTATACATCATTTGCAAAGGGTGGTAGTGGTTTAATAGTTATTGAAGCAACAGGTGTT
GTACCAGAGGGACGTATTACATATGGTTGTACTGGTCTTTGGAAAGATTCTCAAATTGAA
GGTTTAAAAAGAATCGTTGATTTCTCACATGAATTTGAAGCAAAAGTTGGTATCCAATTA
GCTCATGCAGGTCGTAAAGCATCTAACGAGGTCCCATATTTAGATGGAGCTAGAAATTCC
CATCTTACAATTCCATTCGATCATCCAAGTGGTAATGGTTGGAAAGTGTATGGTGCATCA
CCAATCCCATGGAATGAAGTTATGGCAGTACCAATTGAAATGACAATTCAAGATATTGAA
AATGTAATTGAATCATTCAAATCTGCAGCTGTTAGATGCATTAAAGCCTGGTTTGGATTT
CATTGAAATTCACGGTGCACACGGATACTTGATTAGTTCATTCTTATCAA----------
GTTTGGATTTCATTGAAATTCACGGTGCACACGNATACTTGATTAGTTCATTCTTATCAA
CAACTTCAAATAAACGTACTGATAGCTATGGTGGTTCATTTGAGGGTAGAGTTAAATTAT
TAATAGAAGTTGTTAAAGCTGTCCGTTCAGTTTGGACAACTGAAAAGCCATTAGCCGTTA
GAATCTCTGCTGATGAATGTGTTAGAGAAGCTGATGGAATAACTGAATCACCTTTGAATG
GGTGGGGAATTAATGATTCAATTAAATTGGCATCAATATTGGAACAGTATGATGTCGATT
TATTGGATCCATCAAGTGGTGGTAATAATAAACTTCAAAATATTAAACCAGTACCACTTT
ATCATGTACCATACTCTAGTGCAATTAAAAATTCTATTAAAGAACGTTCTGGTAAATTAT
TGGTTTCAGCAGTTGGATTAATTGATAATGCTGAAAATTCAGAATCAATTTTACAATCTG
GAAGTGCAGATTTGATTTTCTTGGGTCGTCCATTCCTTAGAAATCCATTCTTACCTGTTG
AATTTGCTAAACAATTAAATTTAAAAATTGATTATGCTCCACAATATCAACATGCAAGAA
ATTCATCATTACTTTATTCTAGTAAATAAATAAATAAAAATTTTAT
Length of connected seq. 1176
Full length Seq ID VSD744E
Full length Seq. 
>VSD744E.Seq
GTTAGTCCAATGTGTCAATATTCAAGTAAAGATGGATATTTTAATGATTTTCATTTCGGT
CATTATACATCATTTGCAAAGGGTGGTAGTGGTTTAATAGTTATTGAAGCAACAGGTGTT
GTACCAGAGGGACGTATTACATATGGTTGTACTGGTCTTTGGAAAGATTCTCAAATTGAA
GGTTTAAAAAGAATCGTTGATTTCTCACATGAATTTGAAGCAAAAGTTGGTATCCAATTA
GCTCATGCAGGTCGTAAAGCATCTAACGAGGTCCCATATTTAGATGGAGCTAGAAATTCC
CATCTTACAATTCCATTCGATCATCCAAGTGGTAATGGTTGGAAAGTGTATGGTGCATCA
CCAATCCCATGGAATGAAGTTATGGCAGTACCAATTGAAATGACAATTCAAGATATTGAA
AATGTAATTGAATCATTCAAATCTGCAGCTGTTAGATGCATTAAAGCCTGGTTTGGATTT
CATTGAAATTCACGGTGCACACGGATACTTGATTAGTTCATTCTTATCAACAACTTCAAA
TAAACGTACTGATAGCTATGGTGGTTCATTTGAGGGTAGAGTTAAATTATTAATAGAAGT
TGTTAAAGCTGTCCGTTCAGTTTGGACAACTGAAAAGCCATTAGCCGTTAGAATCTCTGC
TGATGAATGTGTTAGAGAAGCTGATGGAATAACTGAATCACCTTTGAATGGGTGGGGAAT
TAATGATTCAATTAAATTGGCATCAATATTGGAACAGTATGATGTCGATTTATTGGATCC
ATCAAGTGGTGGTAATAATAAACTTCAAAATATTAAACCAGTACCACTTTATCATGTACC
ATACTCTAGTGCAATTAAAAATTCTATTAAAGAACGTTCTGGTAAATTATTGGTTTCAGC
AGTTGGATTAATTGATAATGCTGAAAATTCAGAATCAATTTTACAATCTGGAAGTGCAGA
TTTGATTTTCTTGGGTCGTCCATTCCTTAGAAATCCATTCTTACCTGTTGAATTTGCTAA
ACAATTAAATTTAAAAATTGATTATGCTCCACAATATCAACATGCAAGAAATTCATCATT
ACTTTATTCTAGTAAATAAATAAATAAAAATTTTAT
Length of full length seq. 1116