NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD722
Library VS
(Link to library)
Clone ID VSD722
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06592-1
Original site URL
Representative seq. ID VSD722P
(Link to Original site)
Representative DNA sequence 
>VSD722 (VSD722Q) /CSM/VS/VSD7-A/VSD722Q.Seq.d/
CAATATTTTATATCCACCAATTTAAAAAATGAAACCAACTGTCCAATCTCCAAATGGTTC
TGGAAAAAACAAATTTGTAATCTATTCTAAGCCAACAACAACTAATACAATATCTGCCCC
ATCACCATTTAATACTGGCAGAGGTTTTTCTTTATAAATAAATAAAAAAAAAAANCAANG
GAATTACTTTNTTTGTTCACTCAAGGGCCATTCAATACCAATTCAAAAAAACTCANGGGC
CATTCAATNTTTACATATAATAAAAAATNTTTAATTTTGTTAAACCTTTTAAAAATAAAA
AAAAAAXXXXXXXXXXCCANGNGTCCGCCCANGNGTCCGCAATATTTTANATCCACCAAT
TTAAAAAATGAAACCAACTGTCCAATNTCCAAATGGTTNTGGAAAAAACAAATTTGTAAT
NTATTTTAAGCCAACAACAACTAANACAANATCTGCCCCATCACCATTTAANACTGGCAN
AGGTTTTTCTTTATAAATAAATAAAAAAAAAAAACAATGGAATTACTTTCTTTGTTCACT
CAAGGGCCATTCAATACCAATTCAAAAAAACTCAAGGGCCATTCAATATTTACAGTAGAA
TAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
qyfistnlknetncpiskwfwkkqicnlf*annn*ynicpiti*ywqrfffink*KKKXX
ELLXLFTQGPFNTNSKKLXGHSXFTYNKKXLILLNLLKIKKK---

---XXPPXXPQYFXSTNLKNETNCPXSKWXWKKQICNXF*annn*xxicpiti*xwxrff
fink*kkktmellslftqgpfntnskklkghsiftve*k
Translated Amino Acid sequence (All Frames) 
Frame A:
qyfistnlknetncpiskwfwkkqicnlf*annn*ynicpiti*ywqrfffink*KKKXX
ELLXLFTQGPFNTNSKKLXGHSXFTYNKKXLILLNLLKIKKK---

---pxvrpxvrnilxppi*kmkptvqxpngxgknkfvxyfkptttxtxsapspfxtgxgf
sl*inkkkkqwnyflcslkghsipiqknsraiqylq*nk

Frame B:
nilyppi*kmkptvqspngsgknkfviyskptttntisapspfntgrgfsl*inkkkxqx
nyfxcslkghsipiqknsxaiqxlhiiknx*fc*tf*k*kk---

---xxsaxxsaifxihqfkk*nqlsnxqmvxektnl*xilsqqqlxqxlphhhlxlaxvf
lyk*ikkknngitffvhsraiqyqfkktqgpfniysrik

Frame C:
ifyihqfkk*nqlsnlqmvlektnl*silsqqqliqylphhhlilaevflyk*ikkkxxg
itxfvhsraiqyqfkktxgpfnxyi**kxfnfvkpfknkkk---

---XXPPXXPQYFXSTNLKNETNCPXSKWXWKKQICNXF*annn*xxicpiti*xwxrff
fink*kkktmellslftqgpfntnskklkghsiftve*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD722 (VSD722Q) /CSM/VS/VSD7-A/VSD722Q.Seq.d/                        432   e-120
VSI326 (VSI326Q) /CSM/VS/VSI3-B/VSI326Q.Seq.d/                        389   e-107
SSC558 (SSC558Q) /CSM/SS/SSC5-C/SSC558Q.Seq.d/                         36   0.60
VSG756 (VSG756Q) /CSM/VS/VSG7-C/VSG756Q.Seq.d/                         34   2.4
VSC680 (VSC680Q) /CSM/VS/VSC6-D/VSC680Q.Seq.d/                         34   2.4
VFJ116 (VFJ116Q) /CSM/VF/VFJ1-A/VFJ116Q.Seq.d/                         34   2.4
VFD314 (VFD314Q) /CSM/VF/VFD3-A/VFD314Q.Seq.d/                         34   2.4
SSH613 (SSH613Q) /CSM/SS/SSH6-A/SSH613Q.Seq.d/                         34   2.4
SSG721 (SSG721Q) /CSM/SS/SSG7-A/SSG721Q.Seq.d/                         34   2.4
SSE681 (SSE681Q) /CSM/SS/SSE6-D/SSE681Q.Seq.d/                         34   2.4
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264462) Dictyostelium discoideum vegetative cDNA clone:VS...   297   e-115  3
(AU264461) Dictyostelium discoideum vegetative cDNA clone:VS...   323   e-109  3
(AU268513) Dictyostelium discoideum vegetative cDNA clone:VS...   285   3e-95  3
(AU268514) Dictyostelium discoideum vegetative cDNA clone:VS...   248   4e-91  3
(DQ279214) Sialia sialis clone SIALIA-R3M4-P2H04 microsatell...    38   0.011  2
(AC122323) Mus musculus BAC clone RP23-326N21 from chromosom...    50   0.10   1
(DV611002) EST1213998 Glossina morsitans morsitans Fat body ...    34   0.25   3
(EB201478) PEG002-C-105353-501 Normalized Pedal-Pleural Gang...    48   0.40   1
(AC135344) Homo sapiens chromosome 15 clone RP13-618D6 map 1...    38   0.42   6
(AC102549) Mus musculus chromosome 18, clone RP23-138E12, co...    36   0.85   2
dna update 2009. 7.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB465364_1(AB465364|pid:none) Selaginella moellendorffii SmCLE15...    33   6.3
protein update 2009. 7.30
PSORT 

 psg: 0.86  gvh: 0.53  alm: 0.52  top: 0.63  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VSD722 is cyt
5' end seq. ID VSD722F
5' end seq. 
>VSD722F.Seq
CAATATTTTATATCCACCAATTTAAAAAATGAAACCAACTGTCCAATCTCCAAATGGTTC
TGGAAAAAACAAATTTGTAATCTATTCTAAGCCAACAACAACTAATACAATATCTGCCCC
ATCACCATTTAATACTGGCAGAGGTTTTTCTTTATAAATAAATAAAAAAAAAAANCAANG
GAATTACTTTNTTTGTTCACTCAAGGGCCATTCAATACCAATTCAAAAAAACTCANGGGC
CATTCAATNTTTACATATAATAAAAAATNTTTAATTTTGTTAAACCTTTTAAAAATAAAA
AAAAAA----------
Length of 5' end seq. 306
3' end seq. ID VSD722Z
3' end seq. 
>VSD722Z.Seq
----------CCANGNGTCCGCCCANGNGTCCGCAATATTTTANATCCACCAATTTAAAA
AATGAAACCAACTGTCCAATNTCCAAATGGTTNTGGAAAAAACAAATTTGTAATNTATTT
TAAGCCAACAACAACTAANACAANATCTGCCCCATCACCATTTAANACTGGCANAGGTTT
TTCTTTATAAATAAATAAAAAAAAAAAACAATGGAATTACTTTCTTTGTTCACTCAAGGG
CCATTCAATACCAATTCAAAAAAACTCAAGGGCCATTCAATATTTACAGTAGAATAAAAA
Length of 3' end seq. 290
Connected seq. ID VSD722P
Connected seq. 
>VSD722P.Seq
CAATATTTTATATCCACCAATTTAAAAAATGAAACCAACTGTCCAATCTCCAAATGGTTC
TGGAAAAAACAAATTTGTAATCTATTCTAAGCCAACAACAACTAATACAATATCTGCCCC
ATCACCATTTAATACTGGCAGAGGTTTTTCTTTATAAATAAATAAAAAAAAAAANCAANG
GAATTACTTTNTTTGTTCACTCAAGGGCCATTCAATACCAATTCAAAAAAACTCANGGGC
CATTCAATNTTTACATATAATAAAAAATNTTTAATTTTGTTAAACCTTTTAAAAATAAAA
AAAAAA----------CCANGNGTCCGCCCANGNGTCCGCAATATTTTANATCCACCAAT
TTAAAAAATGAAACCAACTGTCCAATNTCCAAATGGTTNTGGAAAAAACAAATTTGTAAT
NTATTTTAAGCCAACAACAACTAANACAANATCTGCCCCATCACCATTTAANACTGGCAN
AGGTTTTTCTTTATAAATAAATAAAAAAAAAAAACAATGGAATTACTTTCTTTGTTCACT
CAAGGGCCATTCAATACCAATTCAAAAAAACTCAAGGGCCATTCAATATTTACAGTAGAA
TAAAAA
Length of connected seq. 596
Full length Seq ID -
Full length Seq. -
Length of full length seq. -