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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD719
Library VS
(Link to library)
Clone ID VSD719
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD719P
(Link to Original site)
Representative DNA sequence 
>VSD719 (VSD719Q) /CSM/VS/VSD7-A/VSD719Q.Seq.d/
ATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAAATC
ATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAACCAG
ATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAACCAG
ATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCCTCTTTAGCCGT
CAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTACCTTTATTAAAAAA
AAAAXXXXXXXXXXATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGA
AGATGCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCA
TCCGCCAAAACCAGATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGT
ACCGGTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAA
GCCTCTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTA
CCT
sequence update 2001. 3.22
Translated Amino Acid sequence 
iqfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnqilqley*sst*kdhryr*nq
ifedcpqeiqqwfqrslfsrqkncc*INKIFKLNSTFIKKK---

---FSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTG
RTRYLKTVHKRFNSGFKEASLAVKKTAAK*ikssn*ivp
Translated Amino Acid sequence (All Frames) 
Frame A:
iqfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnqilqley*sst*kdhryr*nq
ifedcpqeiqqwfqrslfsrqkncc*INKIFKLNSTFIKKK---

---iqfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnqilqley*sst*kdhryr
*nqifedcpqeiqqwfqrslfsrqkncc*inkifklnst

Frame B:
fsfgrrhtkshtlcrrcgkssfhiqkktcascgypsaktrsynwsikaqrrkttgtgrtr
ylktvhkrfnsgfkeaslavkktaak*ikssn*ivpllkkk---

---FSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTG
RTRYLKTVHKRFNSGFKEASLAVKKTAAK*ikssn*ivp

Frame C:
svlvvdtpsptpyaedavnhhstskrrpvlhvvihppkpdlttgvlklnverppvpvepd
i*rlstrdstvvskkpl*pskklllnk*nlqik*yly*kk---

---svlvvdtpsptpyaedavnhhstskrrpvlhvvihppkpdlttgvlklnverppvpv
epdi*rlstrdstvvskkpl*pskklllnk*nlqik*y
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ502 (VSJ502Q) /CSM/VS/VSJ5-A/VSJ502Q.Seq.d/                        541   e-153
VSJ359 (VSJ359Q) /CSM/VS/VSJ3-C/VSJ359Q.Seq.d/                        541   e-153
VSJ208 (VSJ208Q) /CSM/VS/VSJ2-A/VSJ208Q.Seq.d/                        541   e-153
VSI655 (VSI655Q) /CSM/VS/VSI6-C/VSI655Q.Seq.d/                        541   e-153
VSI187 (VSI187Q) /CSM/VS/VSI1-D/VSI187Q.Seq.d/                        541   e-153
VSI165 (VSI165Q) /CSM/VS/VSI1-C/VSI165Q.Seq.d/                        541   e-153
VSH588 (VSH588Q) /CSM/VS/VSH5-D/VSH588Q.Seq.d/                        541   e-153
VSG428 (VSG428Q) /CSM/VS/VSG4-B/VSG428Q.Seq.d/                        541   e-153
VSG421 (VSG421Q) /CSM/VS/VSG4-A/VSG421Q.Seq.d/                        541   e-153
VSG140 (VSG140Q) /CSM/VS/VSG1-B/VSG140Q.Seq.d/                        541   e-153
own update 2002. 8.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU261893) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU269571) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU266684) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU268253) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU263134) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU261522) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU265701) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU270017) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU268290) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
(AU266464) Dictyostelium discoideum vegetative cDNA clone:VS...   478   e-148  2
dna update 2009. 7.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MG6) RecName: Full=60S ribosomal protein L37;                     155   6e-37
CR954207_405(CR954207|pid:none) Ostreococcus tauri strain OTTH05...   110   3e-23
BT076110_1(BT076110|pid:none) Caligus rogercresseyi clone crog-e...   108   9e-23
CP001323_357(CP001323|pid:none) Micromonas sp. RCC299 chromosome...   107   3e-22
(P05733) RecName: Full=60S ribosomal protein L37-B; AltName: Ful...   107   3e-22
AM049129_1(AM049129|pid:none) Timarcha balearica mRNA for riboso...   107   3e-22
EF639014_1(EF639014|pid:none) Triatoma infestans clone TI-498 60...   106   4e-22
AY181247_5(AY181247|pid:none) Candida glabrata putative mating-t...   106   4e-22
(P51402) RecName: Full=60S ribosomal protein L37-B; AltName: Ful...   106   6e-22
AM049128_1(AM049128|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   104   2e-21
protein update 2009. 7.30
PSORT 

 psg: 0.64  gvh: 0.33  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.83  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for VSD719 is mit
5' end seq. ID VSD719F
5' end seq. 
>VSD719F.Seq
ATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAAATC
ATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAACCAG
ATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAACCAG
ATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCCTCTTTAGCCGT
CAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTACCTTTATTAAAAAA
AAAA----------
Length of 5' end seq. 304
3' end seq. ID VSD719Z
3' end seq. 
>VSD719Z.Seq
----------ATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGAT
GCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCG
CCAAAACCAGATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCG
GTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCCT
CTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTACCT
Length of 3' end seq. 289
Connected seq. ID VSD719P
Connected seq. 
>VSD719P.Seq
ATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAAATC
ATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAACCAG
ATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAACCAG
ATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCCTCTTTAGCCGT
CAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTACCTTTATTAAAAAA
AAAA----------ATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGA
AGATGCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCA
TCCGCCAAAACCAGATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGT
ACCGGTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAA
GCCTCTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTA
CCT
Length of connected seq. 593
Full length Seq ID -
Full length Seq. -
Length of full length seq. -