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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD715
Library VS
(Link to library)
Clone ID VSD715
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD715F
(Link to Original site)
Representative DNA sequence 
>VSD715 (VSD715Q) /CSM/VS/VSD7-A/VSD715Q.Seq.d/
GCAAGTGGTAGTAATTAATTAAAATATATTATTAGAAATGATTCAAAAAAAAAAAAATTA
AAAAAAANTAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
asgsn*LKYIIRNDSKKKKLKKXKKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
asgsn*LKYIIRNDSKKKKLKKXKKK---


Frame B:
qvvvin*nillemiqkkkn*kkxkk---


Frame C:
kw**likiyy*k*fkkkkikkx*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD715 (VSD715Q) /CSM/VS/VSD7-A/VSD715Q.Seq.d/                         88   2e-17
SSM862 (SSM862Q) /CSM/SS/SSM8-C/SSM862Q.Seq.d/                         88   2e-17
SSL121 (SSL121Q) /CSM/SS/SSL1-A/SSL121Q.Seq.d/                         88   2e-17
SSK608 (SSK608Q) /CSM/SS/SSK6-A/SSK608Q.Seq.d/                         88   2e-17
SSH260 (SSH260Q) /CSM/SS/SSH2-C/SSH260Q.Seq.d/                         88   2e-17
SSG428 (SSG428Q) /CSM/SS/SSG4-B/SSG428Q.Seq.d/                         88   2e-17
SSF603 (SSF603Q) /CSM/SS/SSF6-A/SSF603Q.Seq.d/                         88   2e-17
SSA541 (SSA541Q) /CSM/SS/SSA5-B/SSA541Q.Seq.d/                         88   2e-17
SLJ717 (SLJ717Q) /CSM/SL/SLJ7-A/SLJ717Q.Seq.d/                         88   2e-17
SLH725 (SLH725Q) /CSM/SL/SLH7-B/SLH725Q.Seq.d/                         88   2e-17
own update 2001. 3.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264449) Dictyostelium discoideum vegetative cDNA clone:VS...    88   5e-14  1
(AU053803) Dictyostelium discoideum slug cDNA, clone SLJ717.       88   5e-14  1
(AU039403) Dictyostelium discoideum slug cDNA, clone SLH725.       88   5e-14  1
(AU038090) Dictyostelium discoideum slug cDNA, clone SSH260.       88   5e-14  1
(C94389) Dictyostelium discoideum slug cDNA, clone SSK608.         88   5e-14  1
(C93239) Dictyostelium discoideum slug cDNA, clone SSM862.         88   5e-14  1
(C92872) Dictyostelium discoideum slug cDNA, clone SSF603.         88   5e-14  1
(C83898) Dictyostelium discoideum slug cDNA, clone SSA541.         88   5e-14  1
(BJ428666) Dictyostelium discoideum cDNA clone:ddv12d20, 3' ...    64   8e-07  1
(BJ374340) Dictyostelium discoideum cDNA clone:ddc7g11, 3' e...    50   0.012  1
dna update 2009. 7.23
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 41,420,794
protein update 2009. 7.30
PSORT -
5' end seq. ID VSD715F
5' end seq. 
>VSD715F.Seq
GCAAGTGGTAGTAATTAATTAAAATATATTATTAGAAATGATTCAAAAAAAAAAAAATTA
AAAAAAANTAAAAAAAAAA----------
Length of 5' end seq. 79
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -