VSD712
Library VS
(Link to library)
Clone ID VSD712
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD712F
(Link to Original site)
Representative DNA sequence
>VSD712 (VSD712Q) /CSM/VS/VSD7-A/VSD712Q.Seq.d/
ATTTTTAATCAATATTTTGAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
IFNQYFEKK---


Translated Amino Acid sequence (All Frames)
Frame A:
IFNQYFEKK---


Frame B:
flinilkkk---


Frame C:
f*sif*kk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD712 (VSD712Q) /CSM/VS/VSD7-A/VSD712Q.Seq.d/ 38 0.006
SSF866 (SSF866Q) /CSM/SS/SSF8-C/SSF866Q.Seq.d/ 32 0.37
SSE339 (SSE339Q) /CSM/SS/SSE3-B/SSE339Q.Seq.d/ 30 1.4
VFJ282 (VFJ282Q) /CSM/VF/VFJ2-D/VFJ282Q.Seq.d/ 28 5.7
SSJ845 (SSJ845Q) /CSM/SS/SSJ8-B/SSJ845Q.Seq.d/ 28 5.7
SSH476 (SSH476Q) /CSM/SS/SSH4-D/SSH476Q.Seq.d/ 28 5.7
SSG386 (SSG386Q) /CSM/SS/SSG3-D/SSG386Q.Seq.d/ 28 5.7
SSF269 (SSF269Q) /CSM/SS/SSF2-C/SSF269Q.Seq.d/ 28 5.7
SSE236 (SSE236Q) /CSM/SS/SSE2-B/SSE236Q.Seq.d/ 28 5.7
SSC506 (SSC506Q) /CSM/SS/SSC5-A/SSC506Q.Seq.d/ 28 5.7

own update 2003. 7. 6
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 32,362,516
Number of extensions: 1620328
Number of successful extensions: 1458406
Number of sequences better than 10.0: 0
Length of query: 39
Length of database: 104,622,809,269
Length adjustment: 21
Effective length of query: 18
Effective length of database: 102,402,190,351
Effective search space: 1843239426318
Effective search space used: 1843239426318
X1: 11 (21.8 bits)
S2: 19 (38.2 bits)









Dictyostelium discoideum cDNA Project Home



dna update 2009. 7.23
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 37,376,922
protein update 2009. 7.30
PSORT -
5' end seq. ID VSD712F
5' end seq.
>VSD712F.Seq
ATTTTTAATCAATATTTTGAAAAAAAAAA----------
Length of 5' end seq. 29
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -