VSD710
Library VS
(Link to library)
Clone ID VSD710
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01768-1
Original site URL
Representative seq. ID VSD710P
(Link to Original site)
Representative DNA sequence
>VSD710 (VSD710Q) /CSM/VS/VSD7-A/VSD710Q.Seq.d/
GATCTATTATTTAATTTTCTTTTTCTACAAAATAATCAAACACAAGCACTATCACAAGCA
TAAGCATACACACACAATATAGTAATAGTAGTAATAATAAAAATAATAAAAAATGATCAA
TCCATTAAATAAACCAGTTTTAGGTACTAGATTAATGAATTCAGTATTCTTTCCAAATAT
TAAACTTCAAGTAATTAGAAATAGTGGCAAAACTTTTGAAAATACTAATAAAATTATGTT
CAAAACCGATTGTTCAGTTGGTAAAACTGATATTAAAACATATATGAAAGCTTTGTATGA
TGTAAATGTGGATAAAGTTAATACAATCAATGTTCAAGGTAGAATTAAATCAAAAACTAA
AGGTCTTCAAAAACGTTCAAAATTAAATTCTAAATATAAAACTCCTGATTATAAAAAAGC
AATCATCACTGTAGATCCATCTTTAAGAGCTCAATTATCAAGAGGAAAGAATTAAAATTA
AAAAAAAATAAAAATAAAAAATTAAAAAATAAAAAATTAAAAAATAAAAATAATAATAAA
AAAAAAAGTATAAAATAAAATATTAAAAAATATTATTAAAAAAAAAAXXXXXXXXXXCCA
CGCGTNCCGGATCATATTATTTAATTTTCTTTTTCATACAAAATAATCAAACACAAGCAC
TATCACAAGCATAAGCATACACACACAAATATAGTAATAGTAGTAATAATAAAAATAATA
AAAAATGATCAATCCATTAAATAAACCAGTTTTAGGTACTAGATTAATGAATTCAGTATT
CTTTCCAAATATTAAACTTCAAGTAATTAGAAATAGTGGCAAAACTTTTGAAAATACTAA
TAAAATTATGTTCAAAACCGATTGTTCAGTTGGTAAAACTGATATTAAAACATATATGAA
AGCTTTGTATGATGTAAATGTGGATAAAGTTAATACAATCAATGTTCAAGGTAGAATTAA
ATCAAAAACTAAAGGTCTTCAAAAACGTTCAAAATTAAATTCTAAATATAAAACTCCTGA
TTATAAAAAAGCAATCATCACTGTAGATCCATCTTTAAGAGCTCAATTATCAAGAGGAAA
GAATTAAAATTAAAAAAAAATAAAAATAAAAAATTAAAAAATAAAAAATTAAAAAATAAA
AATAATAATAAAAAAAAAGTATAAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
iyylifffykiikhkhyhkhkhthti*******k**kminplnkpvlgtrlmnsvffpni
klqvirnsgktfentnkimfktdcsvgktdiktymkalydvnvdkvntinvqgriksktk
glqkrsklnskyktpdykkaiitvdpslraqlsrgkn*n*kkikikn*kikn*kikiiik
kkv*NKILKNIIKKK---

---TRXGSYYLIFFFIQNNQTQALSQA*aythkysnssnnknnkk*sih*inqf*vld**
iqysfqilnfk*leivakllkiliklcskpivqlvklilkhi*klcmm*mwikliqsmfk
velnqklkvfknvqn*ilniklliikkqssl*ihl*elnyqeerikikkk*k*kikk*ki
kk*k***kksik


Translated Amino Acid sequence (All Frames)
Frame A:
dllfnflflqnnqtqalsqa*aythnivivviikiikndqsik*tsfry*inefsilsky
*tssn*k*wqnf*ky**nyvqnrlfsw*n*y*niyesfv*ckcg*s*ynqcsr*n*ikn*
rssktfkikf*i*ns*l*ksnhhcrsifkssiikrkelklkknknkklknkklknknnnk
kksik*nikkyy*kk---

---prvpdhii*fsfsykiikhkhyhkhkhthtnivivviikiikndqsik*tsfry*in
efsilsky*tssn*k*wqnf*ky**nyvqnrlfsw*n*y*niyesfv*ckcg*s*ynqcs
r*n*ikn*rssktfkikf*i*ns*l*ksnhhcrsifkssiikrkelklkknknkklknkk
lknknnnkkkv*n

Frame B:
iyylifffykiikhkhyhkhkhthti*******k**kminplnkpvlgtrlmnsvffpni
klqvirnsgktfentnkimfktdcsvgktdiktymkalydvnvdkvntinvqgriksktk
glqkrsklnskyktpdykkaiitvdpslraqlsrgkn*n*kkikikn*kikn*kikiiik
kkv*NKILKNIIKKK---

---haxriilfnflfhtk*sntstitsisihtqi*******k**kminplnkpvlgtrlm
nsvffpniklqvirnsgktfentnkimfktdcsvgktdiktymkalydvnvdkvntinvq
griksktkglqkrsklnskyktpdykkaiitvdpslraqlsrgkn*n*kkikikn*kikn
*kikiiikkkyk

Frame C:
sii*fsfstk*sntstitsisihtqysnssnnknnkk*sih*inqf*vld**iqysfqil
nfk*leivakllkiliklcskpivqlvklilkhi*klcmm*mwikliqsmfkvelnqklk
vfknvqn*ilniklliikkqssl*ihl*elnyqeerikikkk*k*kikk*kikk*k***k
kkykiky*killkkk---

---TRXGSYYLIFFFIQNNQTQALSQA*aythkysnssnnknnkk*sih*inqf*vld**
iqysfqilnfk*leivakllkiliklcskpivqlvklilkhi*klcmm*mwikliqsmfk
velnqklkvfknvqn*ilniklliikkqssl*ihl*elnyqeerikikkk*k*kikk*ki
kk*k***kksik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSH252 (VSH252Q) /CSM/VS/VSH2-C/VSH252Q.Seq.d/ 712 0.0
VSG471 (VSG471Q) /CSM/VS/VSG4-C/VSG471Q.Seq.d/ 712 0.0
VSD710 (VSD710Q) /CSM/VS/VSD7-A/VSD710Q.Seq.d/ 712 0.0
VSI826 (VSI826Q) /CSM/VS/VSI8-B/VSI826Q.Seq.d/ 698 0.0
VSE301 (VSE301Q) /CSM/VS/VSE3-A/VSE301Q.Seq.d/ 684 0.0
SSH132 (SSH132Q) /CSM/SS/SSH1-B/SSH132Q.Seq.d/ 404 e-111
VSJ753 (VSJ753Q) /CSM/VS/VSJ7-C/VSJ753Q.Seq.d/ 38 0.29
VSI721 (VSI721Q) /CSM/VS/VSI7-A/VSI721Q.Seq.d/ 38 0.29
VSF528 (VSF528Q) /CSM/VS/VSF5-B/VSF528Q.Seq.d/ 38 0.29
SLD235 (SLD235Q) /CSM/SL/SLD2-B/SLD235Q.Seq.d/ 36 1.2

own update 2004. 8. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU264442) Dictyostelium discoideum vegetative cDNA clone:VS... 414 e-179 3
(AU266535) Dictyostelium discoideum vegetative cDNA clone:VS... 414 e-174 3
(AU267144) Dictyostelium discoideum vegetative cDNA clone:VS... 414 e-174 3
(AU264441) Dictyostelium discoideum vegetative cDNA clone:VS... 414 e-173 3
(AU269290) Dictyostelium discoideum vegetative cDNA clone:VS... 414 e-171 3
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 414 e-170 3
(AU266536) Dictyostelium discoideum vegetative cDNA clone:VS... 414 e-168 4
(AU263004) Dictyostelium discoideum vegetative cDNA clone:VS... 414 e-136 2
(AU269291) Dictyostelium discoideum vegetative cDNA clone:VS... 414 e-136 2
(AU073412) Dictyostelium discoideum slug cDNA, clone SSH132. 167 5e-75 2
dna update 2009. 7.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117080_4(AC117080|pid:none) Dictyostelium discoideum chromosom... 236 2e-60
(Q5QXX9) RecName: Full=50S ribosomal protein L23; &AE017340_191... 52 4e-05
(A4VHN2) RecName: Full=50S ribosomal protein L23; &CP000304_775... 51 9e-05
BT053490_1(BT053490|pid:none) Medicago truncatula clone MTYFP_FQ... 50 2e-04
CP000612_214(CP000612|pid:none) Desulfotomaculum reducens MI-1, ... 48 6e-04
AY552545_78(AY552545|pid:none) Uncultured marine gamma proteobac... 48 8e-04
(Q2S914) RecName: Full=50S ribosomal protein L23; &CP000155_594... 47 0.001
AL035708_5(AL035708|pid:none) Arabidopsis thaliana DNA chromosom... 47 0.001
(Q3K5Z0) RecName: Full=50S ribosomal protein L23; &(Q4K535) Rec... 47 0.001
(Q4FLM0) RecName: Full=50S ribosomal protein L23; &CP000084_109... 47 0.001
protein update 2009. 7.30
PSORT

psg: 0.67 gvh: 0.51 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.51 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: mitochondrial
16.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: cytoplasmic

>> prediction for VSD710 is mit

5' end seq. ID VSD710F
5' end seq.
>VSD710F.Seq
GATCTATTATTTAATTTTCTTTTTCTACAAAATAATCAAACACAAGCACTATCACAAGCA
TAAGCATACACACACAATATAGTAATAGTAGTAATAATAAAAATAATAAAAAATGATCAA
TCCATTAAATAAACCAGTTTTAGGTACTAGATTAATGAATTCAGTATTCTTTCCAAATAT
TAAACTTCAAGTAATTAGAAATAGTGGCAAAACTTTTGAAAATACTAATAAAATTATGTT
CAAAACCGATTGTTCAGTTGGTAAAACTGATATTAAAACATATATGAAAGCTTTGTATGA
TGTAAATGTGGATAAAGTTAATACAATCAATGTTCAAGGTAGAATTAAATCAAAAACTAA
AGGTCTTCAAAAACGTTCAAAATTAAATTCTAAATATAAAACTCCTGATTATAAAAAAGC
AATCATCACTGTAGATCCATCTTTAAGAGCTCAATTATCAAGAGGAAAGAATTAAAATTA
AAAAAAAATAAAAATAAAAAATTAAAAAATAAAAAATTAAAAAATAAAAATAATAATAAA
AAAAAAAGTATAAAATAAAATATTAAAAAATATTATTAAAAAAAAAA----------
Length of 5' end seq. 587
3' end seq. ID VSD710Z
3' end seq.
>VSD710Z.Seq
----------CCACGCGTNCCGGATCATATTATTTAATTTTCTTTTTCATACAAAATAAT
CAAACACAAGCACTATCACAAGCATAAGCATACACACACAAATATAGTAATAGTAGTAAT
AATAAAAATAATAAAAAATGATCAATCCATTAAATAAACCAGTTTTAGGTACTAGATTAA
TGAATTCAGTATTCTTTCCAAATATTAAACTTCAAGTAATTAGAAATAGTGGCAAAACTT
TTGAAAATACTAATAAAATTATGTTCAAAACCGATTGTTCAGTTGGTAAAACTGATATTA
AAACATATATGAAAGCTTTGTATGATGTAAATGTGGATAAAGTTAATACAATCAATGTTC
AAGGTAGAATTAAATCAAAAACTAAAGGTCTTCAAAAACGTTCAAAATTAAATTCTAAAT
ATAAAACTCCTGATTATAAAAAAGCAATCATCACTGTAGATCCATCTTTAAGAGCTCAAT
TATCAAGAGGAAAGAATTAAAATTAAAAAAAAATAAAAATAAAAAATTAAAAAATAAAAA
ATTAAAAAATAAAAATAATAATAAAAAAAAAGTATAAAAT
Length of 3' end seq. 570
Connected seq. ID VSD710P
Connected seq.
>VSD710P.Seq
GATCTATTATTTAATTTTCTTTTTCTACAAAATAATCAAACACAAGCACTATCACAAGCA
TAAGCATACACACACAATATAGTAATAGTAGTAATAATAAAAATAATAAAAAATGATCAA
TCCATTAAATAAACCAGTTTTAGGTACTAGATTAATGAATTCAGTATTCTTTCCAAATAT
TAAACTTCAAGTAATTAGAAATAGTGGCAAAACTTTTGAAAATACTAATAAAATTATGTT
CAAAACCGATTGTTCAGTTGGTAAAACTGATATTAAAACATATATGAAAGCTTTGTATGA
TGTAAATGTGGATAAAGTTAATACAATCAATGTTCAAGGTAGAATTAAATCAAAAACTAA
AGGTCTTCAAAAACGTTCAAAATTAAATTCTAAATATAAAACTCCTGATTATAAAAAAGC
AATCATCACTGTAGATCCATCTTTAAGAGCTCAATTATCAAGAGGAAAGAATTAAAATTA
AAAAAAAATAAAAATAAAAAATTAAAAAATAAAAAATTAAAAAATAAAAATAATAATAAA
AAAAAAAGTATAAAATAAAATATTAAAAAATATTATTAAAAAAAAAA----------CCA
CGCGTNCCGGATCATATTATTTAATTTTCTTTTTCATACAAAATAATCAAACACAAGCAC
TATCACAAGCATAAGCATACACACACAAATATAGTAATAGTAGTAATAATAAAAATAATA
AAAAATGATCAATCCATTAAATAAACCAGTTTTAGGTACTAGATTAATGAATTCAGTATT
CTTTCCAAATATTAAACTTCAAGTAATTAGAAATAGTGGCAAAACTTTTGAAAATACTAA
TAAAATTATGTTCAAAACCGATTGTTCAGTTGGTAAAACTGATATTAAAACATATATGAA
AGCTTTGTATGATGTAAATGTGGATAAAGTTAATACAATCAATGTTCAAGGTAGAATTAA
ATCAAAAACTAAAGGTCTTCAAAAACGTTCAAAATTAAATTCTAAATATAAAACTCCTGA
TTATAAAAAAGCAATCATCACTGTAGATCCATCTTTAAGAGCTCAATTATCAAGAGGAAA
GAATTAAAATTAAAAAAAAATAAAAATAAAAAATTAAAAAATAAAAAATTAAAAAATAAA
AATAATAATAAAAAAAAAGTATAAAAT
Length of connected seq. 1157
Full length Seq ID -
Full length Seq. -
Length of full length seq. -