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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD703
Library VS
(Link to library)
Clone ID VSD703
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14714-1
Original site URL
Representative seq. ID VSD703P
(Link to Original site)
Representative DNA sequence 
>VSD703 (VSD703Q) /CSM/VS/VSD7-A/VSD703Q.Seq.d/
AAACTTTTTTTTCATTTAATTTCACTAAATTTACACAATAACTTTATTCTATAAATACAA
AACTATTTTTTATTGTTTTCTTCTTTTTTTTTTTTATTATTATTTTTCAAANGTTTTTTT
TTTNTCCCAATTNTCCATTTNAATTNATTATNTTANAANCAANGTTCCXXXXXXXXXXAA
CTATTTTTTAATGGTTTCNTCNTTTTTTTTTTTAATANTATTTTTCAAAAGTTTTTTTTT
TATACCAATTATACATTTTAATTTATTATATTATAAACAAAGTTACCATGACAGAATCAG
AAACAACATCAAAAAAAGTTAACAAAAGAGTTAAACCAGTACCTAAATCAACTAAAGCAG
GTTTGATTTTCCCAGTTGGTAGAATTCATAGAATGTTAAAGAATAAAGTACCATTAAAGA
GAGTATCAATTCTATCGTCAGTTTATTTAGCAGCAATTTTAGAGTATTTAGCATCAGAGG
TATTAGAATTAACCATCTCACAAGTTTCAATTCAATCTAAAGAATATCACAATGTAAGAA
GAATTTCACCACGTCATTTACTTTTAGCAATTAAAACTGATGAAGAATTAGATAATTTAA
TTAGAGTTTCAACAACAATTGCTGGTGGTGGTGTCATCCCATACATTCATGAAGTTTGAA
AAAGGTTNNACAAAAACCAACTCACCCACA
sequence update 2001. 3.22
Translated Amino Acid sequence 
nfffi*fh*IYTITLFYKYKTIFYCFLLFFFYYYFSXVFFXSQXSIXIXYXXXXV---

---NYFLMVSSFFFLIXFFKSFFFIPIIHFNLLYYKQSYHDRIRNNIKKS*qks*tst*i
n*srfdfpsw*ns*nvke*stikesinsivslfssnfrvfsirgirinhltsfnsi*ris
qckknfttsftfsn*n**rir*fn*sfnnncwwwchpihs*slkkvxqkpthp
Translated Amino Acid sequence (All Frames) 
Frame A:
klffhlislnlhnnfil*iqnyfllfssffflllffkxfffxpixhxnxlxxxqxs---

---NYFLMVSSFFFLIXFFKSFFFIPIIHFNLLYYKQSYHDRIRNNIKKS*qks*tst*i
n*srfdfpsw*ns*nvke*stikesinsivslfssnfrvfsirgirinhltsfnsi*ris
qckknfttsftfsn*n**rir*fn*sfnnncwwwchpihs*slkkvxqkpthp

Frame B:
nfffi*fh*IYTITLFYKYKTIFYCFLLFFFYYYFSXVFFXSQXSIXIXYXXXXV---

---tif*wfxxfff*xyfskvfflyqlyiliyyiinkvtmtesettskkvnkrvkpvpks
tkaglifpvgrihrmlknkvplkrvsilssvylaaileylasevleltisqvsiqskeyh
nvrrisprhlllaiktdeeldnlirvsttiagggvipyihev*krxxknqlth

Frame C:
tffsfnftkftq*lysintklffivffffffiiifqxfffxpnxpfxxixlxxxf---

---lffngfxxfffnxifqkfffytnytf*fiil*tklp*qnqkqhqkkltkelnqylnq
lkqv*fsqlvefiec*rikyh*reyqfyrqfi*qqf*si*hqry*n*pshkfqfnlknit
m*eefhhviyf*qlklmkn*ii*lefqqqllvvvsshtfmkfekgxtktnspt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD703 (VSD703Q) /CSM/VS/VSD7-A/VSD703Q.Seq.d/                        837   0.0
SSF313 (SSF313Q) /CSM/SS/SSF3-A/SSF313Q.Seq.d/                        793   0.0
SSD131 (SSD131Q) /CSM/SS/SSD1-B/SSD131Q.Seq.d/                        618   e-176
VHJ628 (VHJ628Q) /CSM/VH/VHJ6-B/VHJ628Q.Seq.d/                        525   e-148
VSB873 (VSB873Q) /CSM/VS/VSB8-D/VSB873Q.Seq.d/                         40   0.044
VFO624 (VFO624Q) /CSM/VF/VFO6-A/VFO624Q.Seq.d/                         40   0.044
VFK237 (VFK237Q) /CSM/VF/VFK2-B/VFK237Q.Seq.d/                         40   0.044
VFJ888 (VFJ888Q) /CSM/VF/VFJ8-D/VFJ888Q.Seq.d/                         40   0.044
VFA754 (VFA754Q) /CSM/VF/VFA7-C/VFA754Q.Seq.d/                         40   0.044
SSC206 (SSC206Q) /CSM/SS/SSC2-A/SSC206Q.Seq.d/                         40   0.044
own update 2003. 1. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264429) Dictyostelium discoideum vegetative cDNA clone:VS...   728   0.0    2
(C92611) Dictyostelium discoideum slug cDNA, clone SSF313.        652   0.0    2
(C92133) Dictyostelium discoideum slug cDNA, clone SSD131.        587   e-172  2
(BJ442579) Dictyostelium discoideum cDNA clone:ddv50g08, 3' ...   428   e-143  2
(AU072885) Dictyostelium discoideum slug cDNA, clone SSF313.      151   4e-72  3
(AU264428) Dictyostelium discoideum vegetative cDNA clone:VS...   105   2e-25  2
(BW637982) Dugesia ryukyuensis mRNA, clone: Dr_sW_010_D02, 5...    58   4e-08  2
(FK755475) av02113g24r1.1 Symbiotic sea anemone (Anemonia vi...    54   5e-08  3
(FK726793) av01007b10r1.1 Symbiotic sea anemone (Anemonia vi...    54   5e-08  3
(FK756891) av02081m01r1.1 Symbiotic sea anemone (Anemonia vi...    54   5e-08  3
dna update 2009. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06725_1(X06725|pid:none) Tetrahymena macronucleus mRNA for hist...   107   4e-22
FB854219_1(FB854219|pid:none) Sequence 73492 from Patent WO20080...   103   5e-21
CR954202_17(CR954202|pid:none) Ostreococcus tauri strain OTTH059...   101   2e-20
(P70094) RecName: Full=Histone H2A.Z-like;          Short=H2A.Zl...   101   2e-20
FB854185_1(FB854185|pid:none) Sequence 73458 from Patent WO20080...   100   3e-20
AK340227_1(AK340227|pid:none) Acyrthosiphon pisum ACYPI005340 mR...   100   3e-20
FB854195_1(FB854195|pid:none) Sequence 73468 from Patent WO20080...   100   4e-20
(P08991) RecName: Full=Histone H2A.V; AltName: Full=H2A.F/Z; Fla...   100   5e-20
AB273625_1(AB273625|pid:none) Bombyx mori h2a.z mRNA for histone...   100   5e-20
BT081892_1(BT081892|pid:none) Rana catesbeiana clone rcat-evr-53...   100   7e-20
protein update 2009. 7.30
PSORT 

 psg: 0.98  gvh: 0.50  alm: 0.26  top: 0.57  tms: 0.07  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.38  leu: 0.13  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VSD703 is cyt
5' end seq. ID VSD703F
5' end seq. 
>VSD703F.Seq
AAACTTTTTTTTCATTTAATTTCACTAAATTTACACAATAACTTTATTCTATAAATACAA
AACTATTTTTTATTGTTTTCTTCTTTTTTTTTTTTATTATTATTTTTCAAANGTTTTTTT
TTTNTCCCAATTNTCCATTTNAATTNATTATNTTANAANCAANGTTCC----------
Length of 5' end seq. 168
3' end seq. ID VSD703Z
3' end seq. 
>VSD703Z.Seq
----------AACTATTTTTTAATGGTTTCNTCNTTTTTTTTTTTAATANTATTTTTCAA
AAGTTTTTTTTTTATACCAATTATACATTTTAATTTATTATATTATAAACAAAGTTACCA
TGACAGAATCAGAAACAACATCAAAAAAAGTTAACAAAAGAGTTAAACCAGTACCTAAAT
CAACTAAAGCAGGTTTGATTTTCCCAGTTGGTAGAATTCATAGAATGTTAAAGAATAAAG
TACCATTAAAGAGAGTATCAATTCTATCGTCAGTTTATTTAGCAGCAATTTTAGAGTATT
TAGCATCAGAGGTATTAGAATTAACCATCTCACAAGTTTCAATTCAATCTAAAGAATATC
ACAATGTAAGAAGAATTTCACCACGTCATTTACTTTTAGCAATTAAAACTGATGAAGAAT
TAGATAATTTAATTAGAGTTTCAACAACAATTGCTGGTGGTGGTGTCATCCCATACATTC
ATGAAGTTTGAAAAAGGTTNNACAAAAACCAACTCACCCACA
Length of 3' end seq. 512
Connected seq. ID VSD703P
Connected seq. 
>VSD703P.Seq
AAACTTTTTTTTCATTTAATTTCACTAAATTTACACAATAACTTTATTCTATAAATACAA
AACTATTTTTTATTGTTTTCTTCTTTTTTTTTTTTATTATTATTTTTCAAANGTTTTTTT
TTTNTCCCAATTNTCCATTTNAATTNATTATNTTANAANCAANGTTCC----------AA
CTATTTTTTAATGGTTTCNTCNTTTTTTTTTTTAATANTATTTTTCAAAAGTTTTTTTTT
TATACCAATTATACATTTTAATTTATTATATTATAAACAAAGTTACCATGACAGAATCAG
AAACAACATCAAAAAAAGTTAACAAAAGAGTTAAACCAGTACCTAAATCAACTAAAGCAG
GTTTGATTTTCCCAGTTGGTAGAATTCATAGAATGTTAAAGAATAAAGTACCATTAAAGA
GAGTATCAATTCTATCGTCAGTTTATTTAGCAGCAATTTTAGAGTATTTAGCATCAGAGG
TATTAGAATTAACCATCTCACAAGTTTCAATTCAATCTAAAGAATATCACAATGTAAGAA
GAATTTCACCACGTCATTTACTTTTAGCAATTAAAACTGATGAAGAATTAGATAATTTAA
TTAGAGTTTCAACAACAATTGCTGGTGGTGGTGTCATCCCATACATTCATGAAGTTTGAA
AAAGGTTNNACAAAAACCAACTCACCCACA
Length of connected seq. 680
Full length Seq ID -
Full length Seq. -
Length of full length seq. -