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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD677
Library VS
(Link to library)
Clone ID VSD677
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16047-1
Original site URL
Representative seq. ID VSD677Z
(Link to Original site)
Representative DNA sequence 
>VSD677 (VSD677Q) /CSM/VS/VSD6-D/VSD677Q.Seq.d/
XXXXXXXXXXATNAANNNNNTGTTTTANNATTAATNANATTNATTNTTNAAGTTCNANTT
ATGNATATGTNNATTTAGNNNNNNCATTNNATTCNATTNAATTATTAGNAAATTCATTNA
AATTTNATGCANATGTTCATTGCCCANNTNCAGCTCCATCTTTAAGTATTATTATTAACT
NTATCCCATTNTCAAGTAATATCCAAAATTCATTTGGTAATANTTATTTATATCAACCAA
CATTCACTCTTTGTACCGACTTTTCCAAATTATTTAATATTTCCATTACTGCCTCCTTTT
CTTATTCTTCTTCAATTAAGTTTACTTCAAATATGATTAAATTTGATTGTTCCATTGGTA
AAGCTACTTCCTCTGATAATGGAACATCCACTCCTGTACCAACTTCTGAACCTTCCTCCA
CCCCAACTCAAACTCAAACTCAAACTCCAACTCCAACTCAAACTCAAACTCAAACTCCAA
CTCAAACTCATACACCAAAACCAACAATCCCAAATGAAACAAGTGAATTTTATGATTCCT
CTGCATCAAATCTCTCGATTACTAGCACTTTCTTTATTTTATTAATGATTGCTTTATTAT
TTTGAATAATTA
sequence update 2001. 3.22
Translated Amino Acid sequence 
---XXXCFXINXIXXXSSXYXYVXLXXXXXSIXLLXNSXKFXAXVHCPXXAPSLSIIINX
IPXSSNIQNSFGNXYLYQPTFTLCTDFSKLFNISITASFSYSSSIKFTSNMIKFDCSIGK
ATSSDNGTSTPVPTSEPSSTPTQTQTQTPTPTQTQTQTPTQTHTPKPTIPNETSEFYDSS
ASNLSITSTFFILLMIALLF*ii
Translated Amino Acid sequence (All Frames) 
Frame A:
---XXXCFXINXIXXXSSXYXYVXLXXXXXSIXLLXNSXKFXAXVHCPXXAPSLSIIINX
IPXSSNIQNSFGNXYLYQPTFTLCTDFSKLFNISITASFSYSSSIKFTSNMIKFDCSIGK
ATSSDNGTSTPVPTSEPSSTPTQTQTQTPTPTQTQTQTPTQTHTPKPTIPNETSEFYDSS
ASNLSITSTFFILLMIALLF*ii


Frame B:
---xxxvlxlxxxixxvxxmxmxi*xxhxixxny*xihxnxmxmfiaxxqlhl*vllltx
shxqviskihlvixiyinqhslfvptfpnylifpllppflillqlsllqi*lnlivplvk
llplimehpllyqllnlpppqlklklklqlqlklklklqlklihqnqqsqmkqvnfmipl
hqisrllalslfy**llyyfe*l


Frame C:
---xxxfxx*xxxxxkfxlxicxfxxxixfxxiixkfixixcxcslpxxssifkyyy*ly
pixk*ypkfiw*xlfistnihslyrlfqii*yfhycllflfffn*vyfkyd*i*lfhw*s
yfl**wnihsctnf*tflhpnsnsnsnsnsnsnsnsnsnsnsytktnnpk*nk*il*flc
iksldy*hflyfindcfiilnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD851 (VSD851Q) /CSM/VS/VSD8-C/VSD851Q.Seq.d/                        609   e-173
VSD677 (VSD677Q) /CSM/VS/VSD6-D/VSD677Q.Seq.d/                        609   e-173
VFO866 (VFO866Q) /CSM/VF/VFO8-C/VFO866Q.Seq.d/                        609   e-173
VSJ140 (VSJ140Q) /CSM/VS/VSJ1-B/VSJ140Q.Seq.d/                        589   e-167
VSB355 (VSB355Q) /CSM/VS/VSB3-C/VSB355Q.Seq.d/                        547   e-155
VSG213 (VSG213Q) /CSM/VS/VSG2-A/VSG213Q.Seq.d/                        442   e-123
VSJ489 (VSJ489Q) /CSM/VS/VSJ4-D/VSJ489Q.Seq.d/                        208   7e-53
VSI266 (VSI266Q) /CSM/VS/VSI2-C/VSI266Q.Seq.d/                        208   7e-53
VSH558 (VSH558Q) /CSM/VS/VSH5-C/VSH558Q.Seq.d/                        208   7e-53
VSG121 (VSG121Q) /CSM/VS/VSG1-A/VSG121Q.Seq.d/                        208   7e-53
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264409) Dictyostelium discoideum vegetative cDNA clone:VS...   589   0.0    2
(AU269468) Dictyostelium discoideum vegetative cDNA clone:VS...   589   0.0    2
(AU269469) Dictyostelium discoideum vegetative cDNA clone:VS...   589   0.0    2
(AU261970) Dictyostelium discoideum vegetative cDNA clone:VS...   547   0.0    2
(AU264655) Dictyostelium discoideum vegetative cDNA clone:VS...   589   0.0    2
(BJ436246) Dictyostelium discoideum cDNA clone:ddv30d18, 3' ...   589   0.0    2
(AU266137) Dictyostelium discoideum vegetative cDNA clone:VS...   258   e-114  3
(AU266136) Dictyostelium discoideum vegetative cDNA clone:VS...   422   e-114  1
(AU265142) Dictyostelium discoideum vegetative cDNA clone:VS...   178   2e-47  2
(AU270005) Dictyostelium discoideum vegetative cDNA clone:VS...   178   2e-40  1
dna update 2009. 7.23
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 491,223,739
protein update 2009. 7.30
PSORT 

 psg: 0.85  gvh: 0.53  alm: 0.22  top: 0.67  tms: 0.07  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VSD677 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSD677Z
3' end seq. 
>VSD677Z.Seq
----------ATNAANNNNNTGTTTTANNATTAATNANATTNATTNTTNAAGTTCNANTT
ATGNATATGTNNATTTAGNNNNNNCATTNNATTCNATTNAATTATTAGNAAATTCATTNA
AATTTNATGCANATGTTCATTGCCCANNTNCAGCTCCATCTTTAAGTATTATTATTAACT
NTATCCCATTNTCAAGTAATATCCAAAATTCATTTGGTAATANTTATTTATATCAACCAA
CATTCACTCTTTGTACCGACTTTTCCAAATTATTTAATATTTCCATTACTGCCTCCTTTT
CTTATTCTTCTTCAATTAAGTTTACTTCAAATATGATTAAATTTGATTGTTCCATTGGTA
AAGCTACTTCCTCTGATAATGGAACATCCACTCCTGTACCAACTTCTGAACCTTCCTCCA
CCCCAACTCAAACTCAAACTCAAACTCCAACTCCAACTCAAACTCAAACTCAAACTCCAA
CTCAAACTCATACACCAAAACCAACAATCCCAAATGAAACAAGTGAATTTTATGATTCCT
CTGCATCAAATCTCTCGATTACTAGCACTTTCTTTATTTTATTAATGATTGCTTTATTAT
TTTGAATAATTA
Length of 3' end seq. 602
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -