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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD656
Library VS
(Link to library)
Clone ID VSD656
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD656F
(Link to Original site)
Representative DNA sequence 
>VSD656 (VSD656Q) /CSM/VS/VSD6-C/VSD656Q.Seq.d/
ATCAATTAACTTTAAAATTGATACATATTTAGAAGCTGCTCAATTTCAAATTATTTCAAA
ATAATATAAAAATAAAAAATAAAAAATAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
SINFKIDTYLEAAQFQIISK*yknkk*kikk---
Translated Amino Acid sequence (All Frames) 
Frame A:
in*l*n*yifrscsisnyfkii*k*kiknkkk---


Frame B:
SINFKIDTYLEAAQFQIISK*yknkk*kikk---


Frame C:
qltlklihi*kllnfklfqnnikiknkk*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD656 (VSD656Q) /CSM/VS/VSD6-C/VSD656Q.Seq.d/                        113   5e-25
VSJ472 (VSJ472Q) /CSM/VS/VSJ4-C/VSJ472Q.Seq.d/                         34   0.36
VSF601 (VSF601Q) /CSM/VS/VSF6-A/VSF601Q.Seq.d/                         34   0.36
VSF560 (VSF560Q) /CSM/VS/VSF5-C/VSF560Q.Seq.d/                         34   0.36
VSF132 (VSF132Q) /CSM/VS/VSF1-B/VSF132Q.Seq.d/                         34   0.36
VSE851 (VSE851Q) /CSM/VS/VSE8-C/VSE851Q.Seq.d/                         34   0.36
VSE642 (VSE642Q) /CSM/VS/VSE6-B/VSE642Q.Seq.d/                         34   0.36
VSB864 (VSB864Q) /CSM/VS/VSB8-C/VSB864Q.Seq.d/                         34   0.36
VFI348 (VFI348Q) /CSM/VF/VFI3-B/VFI348Q.Seq.d/                         34   0.36
SSJ116 (SSJ116Q) /CSM/SS/SSJ1-A/SSJ116Q.Seq.d/                         34   0.36
own update 2001.12. 5
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC044805|AC044805.3 Mus musculus chromosome 5 clone RP23-282L6 strain C57BL6/J, WORKING DRAFT SEQUENCE, 4 ordered pieces.    36  1.9  2
AC026233|AC026233.3 Mus musculus chromosome 5 clone RP23-407F12 strain C57BL6/J, WORKING DRAFT SEQUENCE, 12 ordered pieces.    36  2.6  3
AC113493|AC113493.4 Mus musculus clone RP23-359H23, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  4.6  1
AC016619|AC016619.5 Homo sapiens chromosome 5 clone CTD-2245F16, WORKING DRAFT SEQUENCE, 6 ordered pieces.    40  4.6  1
AC116812|AC116812.4 Mus musculus clone RP24-357G13, WORKING DRAFT SEQUENCE, 4 ordered pieces.    40  4.6  1
BX511164|BX511164.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-63J1.    40  4.6  1
AC008455|AC008455.7 Homo sapiens chromosome 5 clone CTC-347I1, WORKING DRAFT SEQUENCE, 9 ordered pieces.    40  4.6  1
AC073595|AC073595.31 Homo sapiens 12 BAC RP11-85H7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40  4.6  1
CD515809|CD515809.1 AGENCOURT_14368598 NIH_MGC_181 Homo sapiens cDNA clone IMAGE:30394952 5', mRNA sequence.    40  4.6  1
AC131861|AC131861.4 Rattus norvegicus clone CH230-12O11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40  4.6  1
dna update 2003. 8.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C22) RecName: Full=Origin recognition complex subunit 5; Alt...    40   0.026
protein update 2009. 3.21
PSORT -
5' end seq. ID VSD656F
5' end seq. 
>VSD656F.Seq
ATCAATTAACTTTAAAATTGATACATATTTAGAAGCTGCTCAATTTCAAATTATTTCAAA
ATAATATAAAAATAAAAAATAAAAAATAAAAAAAAAA----------
Length of 5' end seq. 97
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -