>VSD623 (VSD623Q) /CSM/VS/VSD6-A/VSD623Q.Seq.d/
XXXXXXXXXXAGAAGATGTCGAGATAATGTGGAGACTTGCCAGATCATACTTTGACAAGA
ATGAAGAAGTCGCTAATAAAGATGAAAAGAAAAAACTCATTGANCAAGCTTTAGAACTTA
CCAACAAAGCCTCAACTATTANCCCAAATCATTGGGCTGTTCATAAATGGTTAGCAATTT
TAATTTCAGCTTTAGGTGATCATATTTCATCAAAAGAAAAGATTGCAAATGCATTCAAAA
TCAAAGATCATGCAGTCAAAGCNAATGAATTAAAACCAAATGATGCAACCACATTACATT
TATTAGGTCGTTGGTGTTTCTCAATTTCCTCAATTGGTTGGATTGAAAGAACTGCCGCCA
GCGCTTTGTTTGGAACCCCACCAACATCAACTTATGATGAAGCTTTGACTTACTTTTNAG
AAGCATACNAATGTGACCCAACCAACATTCGTAACGCCCTCTTCNCTGGTGACACCTATG
CTGCCCTTA

---EDVEIMWRLARSYFDKNEEVANKDEKKKLIXQALELTNKASTIXPNHWAVHKWLAIL
ISALGDHISSKEKIANAFKIKDHAVKANELKPNDATTLHLLGRWCFSISSIGWIERTAAS
ALFGTPPTSTYDEALTYFXEAYXCDPTNIRNALFXGDTYAAL

Frame A:
---EDVEIMWRLARSYFDKNEEVANKDEKKKLIXQALELTNKASTIXPNHWAVHKWLAIL
ISALGDHISSKEKIANAFKIKDHAVKANELKPNDATTLHLLGRWCFSISSIGWIERTAAS
ALFGTPPTSTYDEALTYFXEAYXCDPTNIRNALFXGDTYAAL


Frame B:
---kmsr*cgdlpdhtltrmkkslikmkrknslxkl*nlptkpqllxqiiglfing*qf*
fql*viifhqkkrlqmhskskimqskxmn*nqmmqphyiy*vvgvsqfpqlvglkelppa
lclephqhqlmmkl*ltfxkhtnvtqptfvtpsslvtpmlpl


Frame C:
---rcrdnvetcqiil*qe*rsr**r*kekth*xsfrtyqqslnyxpkslgcs*mvsnfn
fsfr*syfikrkdckciqnqrscsqsx*iktk*cnhitfirslvflnflnwld*kncrqr
fvwnptninl**sfdllxrsixm*pnqhs*rplxw*hlccp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ842 (VSJ842Q) /CSM/VS/VSJ8-B/VSJ842Q.Seq.d/                        914   0.0
VSE877 (VSE877Q) /CSM/VS/VSE8-D/VSE877Q.Seq.d/                        914   0.0
VSD623 (VSD623Q) /CSM/VS/VSD6-A/VSD623Q.Seq.d/                        914   0.0
CHI642 (CHI642Q) /CSM/CH/CHI6-B/CHI642Q.Seq.d/                        914   0.0
SSK103 (SSK103Q) /CSM/SS/SSK1-A/SSK103Q.Seq.d/                         40   0.031
SLH773 (SLH773Q) /CSM/SL/SLH7-D/SLH773Q.Seq.d/                         40   0.031
SLC595 (SLC595Q) /CSM/SL/SLC5-D/SLC595Q.Seq.d/                         40   0.031
VFN530 (VFN530Q) /CSM/VF/VFN5-B/VFN530Q.Seq.d/                         38   0.12
VFM770 (VFM770Q) /CSM/VF/VFM7-C/VFM770Q.Seq.d/                         38   0.12
VFM659 (VFM659Q) /CSM/VF/VFM6-C/VFM659Q.Seq.d/                         38   0.12

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BZ261862|BZ261862.1 CH230-521G3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-521G3, DNA sequence.    46  0.012  2
AC125373|AC125373.3 Mus musculus chromosome UNK clone RP23-379A13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46  0.40  1
AC024340|AC024340.3 Homo sapiens chromosome 8 clone RP11-314A13 map 8, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38  0.75  2
AC130143|AC130143.4 Rattus norvegicus clone CH230-171A22, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46  0.88  5
AC122066|AC122066.4 Rattus norvegicus clone CH230-57G16, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  1.6  1
AC114118|AC114118.4 Rattus norvegicus clone CH230-12I3, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.6  1
AC126632|AC126632.4 Rattus norvegicus clone CH230-440I11, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.6  1
AC119110|AC119110.4 Rattus norvegicus clone CH230-259O14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  1.6  1
AC136855|AC136855.2 Rattus norvegicus clone CH230-70O16, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  1.6  1
AC110386|AC110386.5 Rattus norvegicus clone CH230-275F2, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44  1.6  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY028171_5(AY028171|pid:none) Leishmania donovani extra chromoso...   147   2e-34
BC054253_1(BC054253|pid:none) Xenopus laevis microtubule-associa...   145   6e-34
CT005258_151(CT005258|pid:none) Leishmania major strain Friedlin...   144   8e-34
BC088015_1(BC088015|pid:none) Xenopus tropicalis hypothetical LO...   143   2e-33
(Q4G069) RecName: Full=Regulator of microtubule dynamics protein...   141   9e-33
(Q5R8E4) RecName: Full=Regulator of microtubule dynamics protein...   141   9e-33
(Q32KL4) RecName: Full=Regulator of microtubule dynamics protein...   139   3e-32
AF151848_1(AF151848|pid:none) Homo sapiens CGI-90 protein mRNA, ...   139   4e-32
(Q96DB5) RecName: Full=Regulator of microtubule dynamics protein...   139   4e-32
AK002442_1(AK002442|pid:none) Mus musculus adult male kidney cDN...   137   1e-31

 psg: 0.75  gvh: 0.48  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSD623 is cyt

>VSD623Z.Seq
----------AGAAGATGTCGAGATAATGTGGAGACTTGCCAGATCATACTTTGACAAGA
ATGAAGAAGTCGCTAATAAAGATGAAAAGAAAAAACTCATTGANCAAGCTTTAGAACTTA
CCAACAAAGCCTCAACTATTANCCCAAATCATTGGGCTGTTCATAAATGGTTAGCAATTT
TAATTTCAGCTTTAGGTGATCATATTTCATCAAAAGAAAAGATTGCAAATGCATTCAAAA
TCAAAGATCATGCAGTCAAAGCNAATGAATTAAAACCAAATGATGCAACCACATTACATT
TATTAGGTCGTTGGTGTTTCTCAATTTCCTCAATTGGTTGGATTGAAAGAACTGCCGCCA
GCGCTTTGTTTGGAACCCCACCAACATCAACTTATGATGAAGCTTTGACTTACTTTTNAG
AAGCATACNAATGTGACCCAACCAACATTCGTAACGCCCTCTTCNCTGGTGACACCTATG
CTGCCCTTA