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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD618
Library VS
(Link to library)
Clone ID VSD618
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14546-1
Original site URL
Representative seq. ID VSD618P
(Link to Original site)
Representative DNA sequence 
>VSD618 (VSD618Q) /CSM/VS/VSD6-A/VSD618Q.Seq.d/
AAAACATTATTAAAAAAAAAAACAAAAATAAAAGTAAACAATAAAATCAATGGCATCATT
AGAAGCAAAGTCAACCACAATTGGGGTAATTGGGACAACAGGTAGAGATAAATCAAGACC
ATTAAATAGTAAACATTTTGATTATTTGNGTGATACATTTCGGCAATATCTTAATAATTT
AGAAACACAACACAAGATAGAACTAAACAATNTAACATTAATAAGTGGGGGTGCGGCATG
GAGTGATCATGTTGCAGTTGATTATTTTTTAAAAAACCCAACAACTTGTAAACTTATTAT
CCATTTACCATGTTTAATCGTTGGTTNTAAAGTTGATGAGAAAATAACACAATNTCGATT
TGATGTTGAACATCCAAATGGNGTAATAACCAATGGATATCATTCAAACTTTAGCAAACA
AATTGGAAGAGATACAATACTTGATTTAATAAAAGCCAAAGAATTGGGNGCAATTTTAXX
XXXXXXXXCCGAAAACATTATTAAAAAAAAAAACAAAAATAAAAGTAAACAATAAAATCA
ATGGCATCATTAGAAGCAAAGTCAACCACAATTGGGGTAATTGGGACAACAGGTAGAGAT
AAATCAAGACCATTAAATAGTAAACATTTTGATTATTTGTGTGATACATTTCGGCAATAT
CTTAATAATTTAGAAACACAACACAAGATAGAACTAAACAATATAACATTAATAAGTGGG
GGTGCGGCATGGAGTGATCATGTTGCAGTTGATTATTTTTTAAAAAACCCAACAACTTGT
AAACTTATTATCCATTTACCATGTTTAATCGTTGGTTATAAAGTTGATGAGAAAATAACA
CAATATCGATTTGATGTTGAACATCCAAATGGTGTAATAACCAATGGATATCATTCAAAC
TTTAGCAAACAAATTGGAAGAGATACAATACTTGATTTAATAAAAGCCAAAGAATTGGGT
GCAATTTTAGATAATTCAGAATTTGGCTTTAAAAATAGAAACACAAGTATCGCTAAACAG
TCTGATTTTTTAGTTGCTTTTACAGGAGCTGTTGGTCCTGCACCACTTGGTGGTGGAACA
CTTGATACTNGAAAAAATCAAAATCATTATATAAACATCATATCTCAATACCNAATCTTT
CACTTCAATTCAATCT
sequence update 2001. 3.22
Translated Amino Acid sequence 
khy*kkkqk*k*TIKSMASLEAKSTTIGVIGTTGRDKSRPLNSKHFDYLXDTFRQYLNNL
ETQHKIELNNXTLISGGAAWSDHVAVDYFLKNPTTCKLIIHLPCLIVGXKVDEKITQXRF
DVEHPNGVITNGYHSNFSKQIGRDTILDLIKAKELGAIL---

---PKTLLKKKTKIKVNNKINGIIRSKVNHNWGNWDNR*r*iktik**tf*lfv*yisai
s**frnttqdrtkqyninkwgcgme*sccs*lffkkpnnl*tyypftmfnrwl*s**enn
tisi*c*tskwcnnqwisfkl*qtnwkrynt*fnksqrigcnfr*friwl*k*khkyr*t
v*ffscfyrscwscttwwwnt*yxkkskslykhhisipnlslqfn
Translated Amino Acid sequence (All Frames) 
Frame A:
ktllkkktkikvnnkingiirskvnhnwgnwdnr*r*iktik**tf*lfx*yisais**f
rnttqdrtkqxninkwgcgme*sccs*lffkkpnnl*tyypftmfnrwx*s**enntxsi
*c*tskwxnnqwisfkl*qtnwkrynt*fnksqrigxnf---

---PKTLLKKKTKIKVNNKINGIIRSKVNHNWGNWDNR*r*iktik**tf*lfv*yisai
s**frnttqdrtkqyninkwgcgme*sccs*lffkkpnnl*tyypftmfnrwl*s**enn
tisi*c*tskwcnnqwisfkl*qtnwkrynt*fnksqrigcnfr*friwl*k*khkyr*t
v*ffscfyrscwscttwwwnt*yxkkskslykhhisipnlslqfn

Frame B:
khy*kkkqk*k*TIKSMASLEAKSTTIGVIGTTGRDKSRPLNSKHFDYLXDTFRQYLNNL
ETQHKIELNNXTLISGGAAWSDHVAVDYFLKNPTTCKLIIHLPCLIVGXKVDEKITQXRF
DVEHPNGVITNGYHSNFSKQIGRDTILDLIKAKELGAIL---

---rkhy*kkkqk*k*tiksmasleaksttigvigttgrdksrplnskhfdylcdtfrqy
lnnletqhkielnnitlisggaawsdhvavdyflknpttckliihlpclivgykvdekit
qyrfdvehpngvitngyhsnfskqigrdtildlikakelgaildnsefgfknrntsiakq
sdflvaftgavgpaplgggtldtxknqnhyiniisqyxifhfnsi

Frame C:
niikkknknkskq*nqwhh*kqsqpqlg*lgqqveinqdh*ivniliixvihfgnilii*
khntr*n*tx*h**vgvrhgvimlqliif*ktqqlvnllsiyhv*slvxklmrk*hnxdl
mlniqmx**pmdiiqtlankleeiqyli**kpknwxqf---

---eniikkknknkskq*nqwhh*kqsqpqlg*lgqqveinqdh*ivniliicvihfgni
lii*khntr*n*ti*h**vgvrhgvimlqliif*ktqqlvnllsiyhv*slviklmrk*h
nidlmlniqmv**pmdiiqtlankleeiqyli**kpknwvqf*iiqnlalkietqvslns
lif*lllqellvlhhlvvehlilekikiii*tsylntxsftsiqs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD618 (VSD618Q) /CSM/VS/VSD6-A/VSD618Q.Seq.d/                       1215   0.0
VSE522 (VSE522Q) /CSM/VS/VSE5-A/VSE522Q.Seq.d/                       1187   0.0
SHB617 (SHB617Q) /CSM/SH/SHB6-A/SHB617Q.Seq.d/                       1166   0.0
VFF370 (VFF370Q) /CSM/VF/VFF3-C/VFF370Q.Seq.d/                         38   0.29
VSE566 (VSE566Q) /CSM/VS/VSE5-C/VSE566Q.Seq.d/                         36   1.2
SSE820 (SSE820Q) /CSM/SS/SSE8-A/SSE820Q.Seq.d/                         36   1.2
VSH482 (VSH482Q) /CSM/VS/VSH4-D/VSH482Q.Seq.d/                         34   4.6
VHN556 (VHN556Q) /CSM/VH/VHN5-C/VHN556Q.Seq.d/                         34   4.6
VHH549 (VHH549Q) /CSM/VH/VHH5-C/VHH549Q.Seq.d/                         34   4.6
VFN208 (VFN208Q) /CSM/VF/VFN2-A/VFN208Q.Seq.d/                         34   4.6
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB022210|AB022210.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16E1.    46  0.027  3
AP006198|AP006198.1 Homo sapiens genomic DNA, chromosome 6, clone:RP11-410D4, complete sequence.    50  0.051  4
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    38  0.12  12
AP002530|AP002530.2 Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 3/4.    50  0.19  8
BD063235|BD063235.1 Secreted human proteins.                      48  0.25  1
AC021286|AC021286.3 Homo sapiens clone RP11-21H22, WORKING DRAFT SEQUENCE, 15 unordered pieces.    36  0.32  6
AC126641|AC126641.3 Rattus norvegicus clone CH230-119F19, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    42  0.37  8
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.83  11
AC125936|AC125936.3 Rattus norvegicus clone CH230-236B19, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36  0.89  6
BE260563|BE260563.1 601146001F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE:3161352 5', mRNA sequence.    46  0.98  1
dna update 2003. 8.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017355_3461(AE017355|pid:none) Bacillus thuringiensis serovar ...    36   3.0
CP000485_3203(CP000485|pid:none) Bacillus thuringiensis str. Al ...    36   3.0
CP001407_3683(CP001407|pid:none) Bacillus cereus 03BB102, comple...    36   3.0
CP000001_3476(CP000001|pid:none) Bacillus cereus E33L, complete ...    35   6.7
protein update 2009. 7.29
PSORT 

 psg: 0.90  gvh: 0.37  alm: 0.38  top: 0.47  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for VSD618 is cyt
5' end seq. ID VSD618F
5' end seq. 
>VSD618F.Seq
AAAACATTATTAAAAAAAAAAACAAAAATAAAAGTAAACAATAAAATCAATGGCATCATT
AGAAGCAAAGTCAACCACAATTGGGGTAATTGGGACAACAGGTAGAGATAAATCAAGACC
ATTAAATAGTAAACATTTTGATTATTTGNGTGATACATTTCGGCAATATCTTAATAATTT
AGAAACACAACACAAGATAGAACTAAACAATNTAACATTAATAAGTGGGGGTGCGGCATG
GAGTGATCATGTTGCAGTTGATTATTTTTTAAAAAACCCAACAACTTGTAAACTTATTAT
CCATTTACCATGTTTAATCGTTGGTTNTAAAGTTGATGAGAAAATAACACAATNTCGATT
TGATGTTGAACATCCAAATGGNGTAATAACCAATGGATATCATTCAAACTTTAGCAAACA
AATTGGAAGAGATACAATACTTGATTTAATAAAAGCCAAAGAATTGGGNGCAATTTTA--
--------
Length of 5' end seq. 478
3' end seq. ID VSD618Z
3' end seq. 
>VSD618Z.Seq
----------CCGAAAACATTATTAAAAAAAAAAACAAAAATAAAAGTAAACAATAAAAT
CAATGGCATCATTAGAAGCAAAGTCAACCACAATTGGGGTAATTGGGACAACAGGTAGAG
ATAAATCAAGACCATTAAATAGTAAACATTTTGATTATTTGTGTGATACATTTCGGCAAT
ATCTTAATAATTTAGAAACACAACACAAGATAGAACTAAACAATATAACATTAATAAGTG
GGGGTGCGGCATGGAGTGATCATGTTGCAGTTGATTATTTTTTAAAAAACCCAACAACTT
GTAAACTTATTATCCATTTACCATGTTTAATCGTTGGTTATAAAGTTGATGAGAAAATAA
CACAATATCGATTTGATGTTGAACATCCAAATGGTGTAATAACCAATGGATATCATTCAA
ACTTTAGCAAACAAATTGGAAGAGATACAATACTTGATTTAATAAAAGCCAAAGAATTGG
GTGCAATTTTAGATAATTCAGAATTTGGCTTTAAAAATAGAAACACAAGTATCGCTAAAC
AGTCTGATTTTTTAGTTGCTTTTACAGGAGCTGTTGGTCCTGCACCACTTGGTGGTGGAA
CACTTGATACTNGAAAAAATCAAAATCATTATATAAACATCATATCTCAATACCNAATCT
TTCACTTCAATTCAATCT
Length of 3' end seq. 668
Connected seq. ID VSD618P
Connected seq. 
>VSD618P.Seq
AAAACATTATTAAAAAAAAAAACAAAAATAAAAGTAAACAATAAAATCAATGGCATCATT
AGAAGCAAAGTCAACCACAATTGGGGTAATTGGGACAACAGGTAGAGATAAATCAAGACC
ATTAAATAGTAAACATTTTGATTATTTGNGTGATACATTTCGGCAATATCTTAATAATTT
AGAAACACAACACAAGATAGAACTAAACAATNTAACATTAATAAGTGGGGGTGCGGCATG
GAGTGATCATGTTGCAGTTGATTATTTTTTAAAAAACCCAACAACTTGTAAACTTATTAT
CCATTTACCATGTTTAATCGTTGGTTNTAAAGTTGATGAGAAAATAACACAATNTCGATT
TGATGTTGAACATCCAAATGGNGTAATAACCAATGGATATCATTCAAACTTTAGCAAACA
AATTGGAAGAGATACAATACTTGATTTAATAAAAGCCAAAGAATTGGGNGCAATTTTA--
--------CCGAAAACATTATTAAAAAAAAAAACAAAAATAAAAGTAAACAATAAAATCA
ATGGCATCATTAGAAGCAAAGTCAACCACAATTGGGGTAATTGGGACAACAGGTAGAGAT
AAATCAAGACCATTAAATAGTAAACATTTTGATTATTTGTGTGATACATTTCGGCAATAT
CTTAATAATTTAGAAACACAACACAAGATAGAACTAAACAATATAACATTAATAAGTGGG
GGTGCGGCATGGAGTGATCATGTTGCAGTTGATTATTTTTTAAAAAACCCAACAACTTGT
AAACTTATTATCCATTTACCATGTTTAATCGTTGGTTATAAAGTTGATGAGAAAATAACA
CAATATCGATTTGATGTTGAACATCCAAATGGTGTAATAACCAATGGATATCATTCAAAC
TTTAGCAAACAAATTGGAAGAGATACAATACTTGATTTAATAAAAGCCAAAGAATTGGGT
GCAATTTTAGATAATTCAGAATTTGGCTTTAAAAATAGAAACACAAGTATCGCTAAACAG
TCTGATTTTTTAGTTGCTTTTACAGGAGCTGTTGGTCCTGCACCACTTGGTGGTGGAACA
CTTGATACTNGAAAAAATCAAAATCATTATATAAACATCATATCTCAATACCNAATCTTT
CACTTCAATTCAATCT
Length of connected seq. 1146
Full length Seq ID -
Full length Seq. -
Length of full length seq. -