NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD608
Library VS
(Link to library)
Clone ID VSD608
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06569-1
Original site URL
Representative seq. ID VSD608P
(Link to Original site)
Representative DNA sequence 
>VSD608 (VSD608Q) /CSM/VS/VSD6-A/VSD608Q.Seq.d/
GATTATAATGATACTTATGGTGAAGATGAATCCAATACTAATTGTAATTATGGTGATAGT
AGTAATAGTAATAATAATTATGATTTCAATGATAACAAATATTATAAAAATAAAAAAGAT
CATAAAGATGTAGGTAACTTTGATAATAATAATAATAATAATAATAATAGTGACAAAAAA
TACATTAGCAACCAATCTTCCAAAAATGCTACACAGAATCAAAATAACAAAAAAAAACTC
AACAAATCATCAGTAAGAAAGCGATTGTATACTCTCACCAAACGTGACTTTTATATTAGC
TCTCCATATTTTCCTGAATTTCAAGTTATTCGTGCACCAAATAAAAGAACTAAAATCCCA
ACAATACCATTTTGGAAAAGTGAATACCCAGTTTATACCATAGAGAATGGTCTTTCAACT
TTTTGTAGAATTGAAACAGTGTCAACAAAAAAAAATTGAANAAAAAAAXXXXXXXXXXGT
CCGCCCANGNGTCCGGATTATAATGATACTTATGGTGAAGATGAATNCAATACTNATTGT
AATTNTGGTGATAGTAGTAATAGTAATAATAATTATGATTTCAATGATAACAAATATTAT
TAAAATAAAAAAGNTCATAAANATGTAGGTAACTTTGATAATNATAATAATNATAATAAN
AATAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
iimilmvkmnpilivimvivviviiimismitniikikkiikm*vtliiiiiiiiivtkn
tlatnlpkmlhrikitkknstnhq*esdcilspnvtfilalhiflnfklfvhqikelksq
qyhfgkvntqfip*RMVFQLFVELKQCQQKKIEXK---

---VRPXVRIIMILMVKMNXILIVIXVIVVIVIIIMISMITNIIKIKKXIXM*vtlixii
xiixi
Translated Amino Acid sequence (All Frames) 
Frame A:
dyndtygedesntncnygdssnsnnnydfndnkyyknkkdhkdvgnfdnnnnnnnnsdkk
yisnqssknatqnqnnkkklnkssvrkrlytltkrdfyisspyfpefqvirapnkrtkip
tipfwkseypvytienglstfcrietvstkkn*xkk---

---VRPXVRIIMILMVKMNXILIVIXVIVVIVIIIMISMITNIIKIKKXIXM*vtlixii
xiixi

Frame B:
iimilmvkmnpilivimvivviviiimismitniikikkiikm*vtliiiiiiiiivtkn
tlatnlpkmlhrikitkknstnhq*esdcilspnvtfilalhiflnfklfvhqikelksq
qyhfgkvntqfip*RMVFQLFVELKQCQQKKIEXK---

---saxxsgl**ylw*r*xqyxl*xw********l*fq**qillk*kxs*xcr*l**x**
x**x*

Frame C:
l**ylw*r*iqy*l*lw********l*fq**qil*k*krs*rcr*l***********qki
h*qpifqkcytesk*qkktqqiiskkaivyshqt*lly*lsifs*issysctk*kn*npn
ntilek*ipslyhrewsfnfl*n*nsvnkkklxkk---

---ppxxpdyndtygedexntxcnxgdssnsnnnydfndnkyy*nkkxhkxvgnfdnxnn
xnxn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD608 (VSD608Q) /CSM/VS/VSD6-A/VSD608Q.Seq.d/                        496   e-139
SSB183 (SSB183Q) /CSM/SS/SSB1-D/SSB183Q.Seq.d/                         46   7e-04
SLI236 (SLI236Q) /CSM/SL/SLI2-B/SLI236Q.Seq.d/                         46   7e-04
SLA136 (SLA136Q) /CSM/SL/SLA1-B/SLA136Q.Seq.d/                         46   7e-04
SHL670 (SHL670Q) /CSM/SH/SHL6-C/SHL670Q.Seq.d/                         46   7e-04
CHM545 (CHM545Q) /CSM/CH/CHM5-B/CHM545Q.Seq.d/                         46   7e-04
CHG303 (CHG303Q) /CSM/CH/CHG3-A/CHG303Q.Seq.d/                         46   7e-04
SSJ782 (SSJ782Q) /CSM/SS/SSJ7-D/SSJ782Q.Seq.d/                         44   0.003
FC-AA16 (FC-AA16Q) /CSM/FC/FC-AA/FC-AA16Q.Seq.d/                       44   0.003
VSI223 (VSI223Q) /CSM/VS/VSI2-A/VSI223Q.Seq.d/                         42   0.011
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

T09822|T09822.1 0405m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 0405m, DNA sequence.    50  4e-07  2
T09823|T09823.1 0405m7 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 0405m, DNA sequence.    50  4e-07  2
BQ597012|BQ597012.1 PfESToab25e09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96422 O96422 ASPARAGINE-RICH PROTEIN ;, mRNA sequence.    50  6e-07  2
BI814149|BI814149.1 PfESToaa10f11.y2 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:O96422 O96422 ASPARAGINE-RICH PROTEIN ;, mRNA sequence.    50  8e-07  2
AF047005|AF047005.1 Plasmodium falciparum asparagine-rich protein mRNA, partial cds.    50  3e-06  2
BZ316872|BZ316872.1 ia77f09.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone ia77f09 5', DNA sequence.    44  3e-06  2
AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 map complement(6807709-6776860) strain AX4, complete sequence.    44  3e-06  4
CC348691|CC348691.1 OGPAY01TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0356A01, DNA sequence.    44  4e-06  2
CC342278|CC342278.1 OGOBU37TVB ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0369H01, DNA sequence.    44  4e-06  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    42  2e-05  7
dna update 2003. 8.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_23(AC116957|pid:none) Dictyostelium discoideum chromoso...    52   2e-05
protein update 2009. 3.21
PSORT 

 psg: 0.41  gvh: 0.44  alm: -0.01  top: 0.47  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VSD608 is end
5' end seq. ID VSD608F
5' end seq. 
>VSD608F.Seq
GATTATAATGATACTTATGGTGAAGATGAATCCAATACTAATTGTAATTATGGTGATAGT
AGTAATAGTAATAATAATTATGATTTCAATGATAACAAATATTATAAAAATAAAAAAGAT
CATAAAGATGTAGGTAACTTTGATAATAATAATAATAATAATAATAATAGTGACAAAAAA
TACATTAGCAACCAATCTTCCAAAAATGCTACACAGAATCAAAATAACAAAAAAAAACTC
AACAAATCATCAGTAAGAAAGCGATTGTATACTCTCACCAAACGTGACTTTTATATTAGC
TCTCCATATTTTCCTGAATTTCAAGTTATTCGTGCACCAAATAAAAGAACTAAAATCCCA
ACAATACCATTTTGGAAAAGTGAATACCCAGTTTATACCATAGAGAATGGTCTTTCAACT
TTTTGTAGAATTGAAACAGTGTCAACAAAAAAAAATTGAANAAAAAAA----------
Length of 5' end seq. 468
3' end seq. ID VSD608Z
3' end seq. 
>VSD608Z.Seq
----------GTCCGCCCANGNGTCCGGATTATAATGATACTTATGGTGAAGATGAATNC
AATACTNATTGTAATTNTGGTGATAGTAGTAATAGTAATAATAATTATGATTTCAATGAT
AACAAATATTATTAAAATAAAAAAGNTCATAAANATGTAGGTAACTTTGATAATNATAAT
AATNATAATAANAATAG
Length of 3' end seq. 187
Connected seq. ID VSD608P
Connected seq. 
>VSD608P.Seq
GATTATAATGATACTTATGGTGAAGATGAATCCAATACTAATTGTAATTATGGTGATAGT
AGTAATAGTAATAATAATTATGATTTCAATGATAACAAATATTATAAAAATAAAAAAGAT
CATAAAGATGTAGGTAACTTTGATAATAATAATAATAATAATAATAATAGTGACAAAAAA
TACATTAGCAACCAATCTTCCAAAAATGCTACACAGAATCAAAATAACAAAAAAAAACTC
AACAAATCATCAGTAAGAAAGCGATTGTATACTCTCACCAAACGTGACTTTTATATTAGC
TCTCCATATTTTCCTGAATTTCAAGTTATTCGTGCACCAAATAAAAGAACTAAAATCCCA
ACAATACCATTTTGGAAAAGTGAATACCCAGTTTATACCATAGAGAATGGTCTTTCAACT
TTTTGTAGAATTGAAACAGTGTCAACAAAAAAAAATTGAANAAAAAAA----------GT
CCGCCCANGNGTCCGGATTATAATGATACTTATGGTGAAGATGAATNCAATACTNATTGT
AATTNTGGTGATAGTAGTAATAGTAATAATAATTATGATTTCAATGATAACAAATATTAT
TAAAATAAAAAAGNTCATAAANATGTAGGTAACTTTGATAATNATAATAATNATAATAAN
AATAG
Length of connected seq. 655
Full length Seq ID -
Full length Seq. -
Length of full length seq. -