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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD604
Library VS
(Link to library)
Clone ID VSD604
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04603-1
Original site URL
Representative seq. ID VSD604P
(Link to Original site)
Representative DNA sequence 
>VSD604 (VSD604Q) /CSM/VS/VSD6-A/VSD604Q.Seq.d/
AGAAATAAATAAAGATGGCAAATACAATTAATACAAATGAAGAAATTTGAAAATATTTTA
AAAGATAATAAATTTTTAGTTGTTATGTTTTGGGCAGATTGGTCAAAACCATCAACTCAA
ATGAGAGATGTTTTTGATCAATTAGCTAAACAAGCTACAAATCAAGCAAACAATAAACTT
TTATTCTTAAAAGTTGAAGCAGAGAAAGTTCATCAAATTTCTGGTAGATATAATGTTAAA
TCTGTACCAACTTGTATATTTTTAAATCAAGGTAAATTAGTTCAATCAGTCGTTGGTGCT
AATCCATCAGAATTAGCATTACAAACAAATAATTTCTCAAAAACTTGTGATACATTACCA
TTGGAAGAGCAACAACAACAACACATTCAAAAAATCAATTTTGTATCATAAAATAAAATA
AAATATAAACTTTTATATTATAAAAAAAAAAXXXXXXXXXXCCACGCGTCCCGAGAAAAT
AAATAAAGATGGCAAATACAATTAATACAAATGAAGAATTTGAAAATATTTTAAAAGATA
ATAAATTTTTAGTTGTTATGTTTTGGGCAGATTGGTCAAAACCATCAACTCAAATGAGAG
ATGTTTTTGATCAATTAGCTAAACAAGCTACAAATCAAGCAAACAATAAACTTTTATTCT
TAAAAGTTGAAGCAGAGAAAGTTCATCAAATTTCTGGTAGATATAATGTTAAATCTGTAC
CAACTTGTATATTTTTAAATCAAGGTAAATTAGTTCAATCAGTCGTTGGTGCTAATCCAT
CAGAATTAGCATTACAAACAAATAATTTCTCAAAAACTTGTGATACATTACCATTGGAAG
AGCAACAACAACAACACATTCAAAAAATCAATTTTGTATCATAAAATAAAATAAAATATA
AACTTTAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
rnk*rwqiqliqmkkfenilkdnkflvvmfwadwskpstqmrdvfdqlakqatnqannkl
lflkveaekvhqisgrynvksvptciflnqgklvqsvvganpselalqtnnfsktcdtlp
leeqqqqhiqkinfvs*NKIKYKLLYYKKK---

---TRPEKINKDGKYN*yk*ri*kyfkr**ifscyvlgrlvktinsnercf*sis*tsyk
sskq*tfilks*sresssnfw*i*c*ictnlyifksr*issisrwc*sirisitnk*flk
nl*yitigratttthsknqfciik*nki*tl
Translated Amino Acid sequence (All Frames) 
Frame A:
rnk*rwqiqliqmkkfenilkdnkflvvmfwadwskpstqmrdvfdqlakqatnqannkl
lflkveaekvhqisgrynvksvptciflnqgklvqsvvganpselalqtnnfsktcdtlp
leeqqqqhiqkinfvs*NKIKYKLLYYKKK---

---prvprk*ikmantintneefenilkdnkflvvmfwadwskpstqmrdvfdqlakqat
nqannkllflkveaekvhqisgrynvksvptciflnqgklvqsvvganpselalqtnnfs
ktcdtlpleeqqqqhiqkinfvs*nkikykly

Frame B:
einkdgkyn*yk*rnlkif*kiinf*llcfgqigqnhqlk*emflin*lnklqikqtinf
ys*klkqrkfikflvdimlnlyqlvyf*ikvn*fnqslvlihqn*hykqiisqklvihyh
wksnnnntfkksilyhkik*ninfyiikkk---

---hasrenk*rwqiqliqmknlkif*kiinf*llcfgqigqnhqlk*emflin*lnklq
ikqtinfys*klkqrkfikflvdimlnlyqlvyf*ikvn*fnqslvlihqn*hykqiisq
klvihyhwksnnnntfkksilyhkik*ninf

Frame C:
k*ikmantintneei*kyfkr**ifscyvlgrlvktinsnercf*sis*tsyksskq*tf
ilks*sresssnfw*i*c*ictnlyifksr*issisrwc*sirisitnk*flknl*yiti
gratttthsknqfciik*nki*tfil*kk---

---TRPEKINKDGKYN*yk*ri*kyfkr**ifscyvlgrlvktinsnercf*sis*tsyk
sskq*tfilks*sresssnfw*i*c*ictnlyifksr*issisrwc*sirisitnk*flk
nl*yitigratttthsknqfciik*nki*tl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD604 (VSD604Q) /CSM/VS/VSD6-A/VSD604Q.Seq.d/                        831   0.0
SSE505 (SSE505Q) /CSM/SS/SSE5-A/SSE505Q.Seq.d/                        759   0.0
SSB754 (SSB754Q) /CSM/SS/SSB7-C/SSB754Q.Seq.d/                        613   e-174
VSJ766 (VSJ766Q) /CSM/VS/VSJ7-C/VSJ766Q.Seq.d/                         76   1e-12
VSJ564 (VSJ564Q) /CSM/VS/VSJ5-C/VSJ564Q.Seq.d/                         76   1e-12
VSI385 (VSI385Q) /CSM/VS/VSI3-D/VSI385Q.Seq.d/                         76   1e-12
VSF518 (VSF518Q) /CSM/VS/VSF5-A/VSF518Q.Seq.d/                         76   1e-12
VSB617 (VSB617Q) /CSM/VS/VSB6-A/VSB617Q.Seq.d/                         76   1e-12
VFN492 (VFN492Q) /CSM/VF/VFN4-D/VFN492Q.Seq.d/                         76   1e-12
VFM179 (VFM179Q) /CSM/VF/VFM1-D/VFM179Q.Seq.d/                         76   1e-12
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.   759  0.0  6
U66525|U66525.1 Dictyostelium discoideum ORFveg114 mRNA, complete cds.    76  8e-11  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34  2e-06  8
J03515|J03515.1 Slime mold (D.discoideum) severin mRNA, complete cds.    48  4e-05  2
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    36  2e-04  8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40  2e-04  8
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          38  8e-04  11
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    46  0.001  5
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    42  0.001  12
AC018911|AC018911.5 Homo sapiens chromosome 17 clone RP11-494I8 map 17, WORKING DRAFT SEQUENCE, 10 unordered pieces.    34  0.001  8
dna update 2003. 8.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86H62) RecName: Full=Glutaredoxin-3 homolog;  &AC116960_78(AC1...   228   4e-59
(O74790) RecName: Full=Monothiol glutaredoxin-5;  &AL031743_6(AL...    70   8e-11
CP001279_1469(CP001279|pid:none) Nautilia profundicola AmH, comp...    68   4e-10
AE000782_1267(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304...    67   1e-09
FM992695_901(FM992695|pid:none) Candida dubliniensis CD36 chromo...    65   2e-09
(Q9JLZ1) RecName: Full=Glutaredoxin-3; AltName: Full=Thioredoxin...    65   2e-09
GM961303_1(GM961303|pid:none) Sequence 8257 from Patent WO200814...    65   3e-09
AF118650_1(AF118650|pid:none) Mus musculus PKCq-interacting prot...    65   3e-09
GM961225_1(GM961225|pid:none) Sequence 8179 from Patent WO200814...    65   4e-09
(Q0IWL9) RecName: Full=Monothiol glutaredoxin-S11;  &AC079888_18...    64   5e-09
protein update 2009. 7.29
PSORT 

 psg: 0.31  gvh: 0.06  alm: 0.80  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VSD604 is nuc
5' end seq. ID VSD604F
5' end seq. 
>VSD604F.Seq
AGAAATAAATAAAGATGGCAAATACAATTAATACAAATGAAGAAATTTGAAAATATTTTA
AAAGATAATAAATTTTTAGTTGTTATGTTTTGGGCAGATTGGTCAAAACCATCAACTCAA
ATGAGAGATGTTTTTGATCAATTAGCTAAACAAGCTACAAATCAAGCAAACAATAAACTT
TTATTCTTAAAAGTTGAAGCAGAGAAAGTTCATCAAATTTCTGGTAGATATAATGTTAAA
TCTGTACCAACTTGTATATTTTTAAATCAAGGTAAATTAGTTCAATCAGTCGTTGGTGCT
AATCCATCAGAATTAGCATTACAAACAAATAATTTCTCAAAAACTTGTGATACATTACCA
TTGGAAGAGCAACAACAACAACACATTCAAAAAATCAATTTTGTATCATAAAATAAAATA
AAATATAAACTTTTATATTATAAAAAAAAAA----------
Length of 5' end seq. 451
3' end seq. ID VSD604Z
3' end seq. 
>VSD604Z.Seq
----------CCACGCGTCCCGAGAAAATAAATAAAGATGGCAAATACAATTAATACAAA
TGAAGAATTTGAAAATATTTTAAAAGATAATAAATTTTTAGTTGTTATGTTTTGGGCAGA
TTGGTCAAAACCATCAACTCAAATGAGAGATGTTTTTGATCAATTAGCTAAACAAGCTAC
AAATCAAGCAAACAATAAACTTTTATTCTTAAAAGTTGAAGCAGAGAAAGTTCATCAAAT
TTCTGGTAGATATAATGTTAAATCTGTACCAACTTGTATATTTTTAAATCAAGGTAAATT
AGTTCAATCAGTCGTTGGTGCTAATCCATCAGAATTAGCATTACAAACAAATAATTTCTC
AAAAACTTGTGATACATTACCATTGGAAGAGCAACAACAACAACACATTCAAAAAATCAA
TTTTGTATCATAAAATAAAATAAAATATAAACTTTAT
Length of 3' end seq. 447
Connected seq. ID VSD604P
Connected seq. 
>VSD604P.Seq
AGAAATAAATAAAGATGGCAAATACAATTAATACAAATGAAGAAATTTGAAAATATTTTA
AAAGATAATAAATTTTTAGTTGTTATGTTTTGGGCAGATTGGTCAAAACCATCAACTCAA
ATGAGAGATGTTTTTGATCAATTAGCTAAACAAGCTACAAATCAAGCAAACAATAAACTT
TTATTCTTAAAAGTTGAAGCAGAGAAAGTTCATCAAATTTCTGGTAGATATAATGTTAAA
TCTGTACCAACTTGTATATTTTTAAATCAAGGTAAATTAGTTCAATCAGTCGTTGGTGCT
AATCCATCAGAATTAGCATTACAAACAAATAATTTCTCAAAAACTTGTGATACATTACCA
TTGGAAGAGCAACAACAACAACACATTCAAAAAATCAATTTTGTATCATAAAATAAAATA
AAATATAAACTTTTATATTATAAAAAAAAAA----------CCACGCGTCCCGAGAAAAT
AAATAAAGATGGCAAATACAATTAATACAAATGAAGAATTTGAAAATATTTTAAAAGATA
ATAAATTTTTAGTTGTTATGTTTTGGGCAGATTGGTCAAAACCATCAACTCAAATGAGAG
ATGTTTTTGATCAATTAGCTAAACAAGCTACAAATCAAGCAAACAATAAACTTTTATTCT
TAAAAGTTGAAGCAGAGAAAGTTCATCAAATTTCTGGTAGATATAATGTTAAATCTGTAC
CAACTTGTATATTTTTAAATCAAGGTAAATTAGTTCAATCAGTCGTTGGTGCTAATCCAT
CAGAATTAGCATTACAAACAAATAATTTCTCAAAAACTTGTGATACATTACCATTGGAAG
AGCAACAACAACAACACATTCAAAAAATCAATTTTGTATCATAAAATAAAATAAAATATA
AACTTTAT
Length of connected seq. 898
Full length Seq ID -
Full length Seq. -
Length of full length seq. -