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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD594
Library VS
(Link to library)
Clone ID VSD594
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD594Z
(Link to Original site)
Representative DNA sequence 
>VSD594 (VSD594Q) /CSM/VS/VSD5-D/VSD594Q.Seq.d/
XXXXXXXXXXATCAATTATTAAATCAAGCAACAATTTATTAAAATCAAACGTTGCTATCA
ATAGTAATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
---SIIKSSNNLLKSNVAINSN
Translated Amino Acid sequence (All Frames) 
Frame A:
---SIIKSSNNLLKSNVAINSN


Frame B:
---qllnqatiy*nqtllsivi


Frame C:
---ny*ikqqfikikrcyq**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI673 (VSI673Q) /CSM/VS/VSI6-D/VSI673Q.Seq.d/                        117   2e-26
VSI102 (VSI102Q) /CSM/VS/VSI1-A/VSI102Q.Seq.d/                        117   2e-26
VSD594 (VSD594Q) /CSM/VS/VSD5-D/VSD594Q.Seq.d/                        117   2e-26
VSD220 (VSD220Q) /CSM/VS/VSD2-A/VSD220Q.Seq.d/                        117   2e-26
SSK361 (SSK361Q) /CSM/SS/SSK3-C/SSK361Q.Seq.d/                        117   2e-26
SSG545 (SSG545Q) /CSM/SS/SSG5-B/SSG545Q.Seq.d/                        117   2e-26
SSG537 (SSG537Q) /CSM/SS/SSG5-B/SSG537Q.Seq.d/                        117   2e-26
SSB438 (SSB438Q) /CSM/SS/SSB4-B/SSB438Q.Seq.d/                        117   2e-26
SSA130 (SSA130Q) /CSM/SS/SSA1-B/SSA130Q.Seq.d/                        117   2e-26
SSD772 (SSD772Q) /CSM/SS/SSD7-C/SSD772Q.Seq.d/                         34   0.21
own update 2002. 7.30
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX187252|BX187252.1 Danio rerio genomic clone DKEY-188C20, genomic survey sequence.    48  0.010  1
BX004880|BX004880.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48  0.17  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  2.0  3
BU080866|BU080866.1 saq30h08.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1045-6496 5', mRNA sequence.    30  2.1  2
AC004485|AC004485.2 Homo sapiens BAC clone CTB-118E13 from 7p11.2-p21, complete sequence.    40  2.6  1
AC097193|AC097193.7 Rattus norvegicus clone CH230-182B21, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  2.6  1
BE079415|BE079415.1 RC5-BT0624-220200-032-B08 BT0624 Homo sapiens cDNA, mRNA sequence.    40  2.6  1
BG731932|BG731932.1 ps07c01.y4 Trichinella spiralis ML CMVsport jasmer Trichinella spiralis cDNA 5' similar to contains element LTR4 repetitive element ;, mRNA sequence.    40  2.6  1
AC142353|AC142353.1 Pan troglodytes chromosome 7 clone RP43-21M1, complete sequence.    40  2.6  1
AC009228|AC009228.4 Homo sapiens BAC clone RP11-219F1 from 2, complete sequence.    40  2.6  1
dna update 2003. 8.22
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 50,679,196
protein update 2009. 7.29
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSD594Z
3' end seq. 
>VSD594Z.Seq
----------ATCAATTATTAAATCAAGCAACAATTTATTAAAATCAAACGTTGCTATCA
ATAGTAATA
Length of 3' end seq. 59
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -