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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA345
Library AH
(Link to library)
Clone ID AHA345
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID AHA345P
(Link to Original site)
Representative DNA sequence 
>AHA345 (AHA345Q) /CSM/AH/AHA3-B/AHA345Q.Seq.d/
AATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTG
TGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACC
AAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGT
TGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACAT
TGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACC
AGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCT
CTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATA
TGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCG
TCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATCAC
TATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAA
TGATGGTACXXXXXXXXXXTTAATTGAAGATCACCCATACTCAAGTAGATTCAATGAAAT
CTTTGTTCAACTTTTGAAACCACTTTCAAAACGTTTAGGGTTTCGAGCCAACCAAAGGTG
AACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTG
ATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAA
GTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAG
CTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATT
CTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATT
TCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAA
ATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAA
CATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGG
ATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTG
ATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTT
TTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGKV
DITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTIL
SIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKIT
ISSHLTALSNMDTTSVIENNDG---

---LIEDHPYSSRFNEIFVQLLKPLSKRLGFRANQR*tifrylvkr*skh*igyvg*c*y
rc*m*ekirsfqsrlfkftirysfystcynrkeww*s*stnhh*sis*iffsr*keflpf
gtcfgskrgig*kspqfrfisir*ksr*lygflyppkscssirlglphqkl*snqrni*k
lsfvwsyhw*lshl*ng*fsiq*srqlfqrssssnc*sfn*trfrngyn*fklvqsf*sr
fikldsikikikslt
Translated Amino Acid sequence (All Frames) 
Frame A:
nftclf*fytyk**ys*knv*s*tfs*qsr*isitr*yrtk*irfts*tkfkgfciqrqs
*hynqyc*tnqknhypfn*h*nsiskdlkstsyfryll*trrscnfripr*itsyrkyns
lh*fhwyfk*qikrflsfkiccqw*rslywyhsirsh*csscfpmf**tcfkifl*y*nh
yfisfncsfkygynfcn*k**wy---

---LIEDHPYSSRFNEIFVQLLKPLSKRLGFRANQR*tifrylvkr*skh*igyvg*c*y
rc*m*ekirsfqsrlfkftirysfystcynrkeww*s*stnhh*sis*iffsr*keflpf
gtcfgskrgig*kspqfrfisir*ksr*lygflyppkscssirlglphqkl*snqrni*k
lsfvwsyhw*lshl*ng*fsiq*srqlfqrssssnc*sfn*trfrngyn*fklvqsf*sr
fikldsikikikslt

Frame B:
ISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGKV
DITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTIL
SIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKIT
ISSHLTALSNMDTTSVIENNDG---

---*lkithtqvdsmkslfnf*nhfqnv*gfeptkgepssdtllrdkvntklgmlgdadi
vaeckkrfeafkadssslpsdirstvlativknggeadqqiiidqylksslvaeknsyll
vlalapkeelvekalnfalspsvrsqdsymvfftlpnrvrqfawayltknfnqinetfkn
splfgriigscltskmddsqynevvnffkdhpvpiadrsikqdlemvtinsnwfkafnqd
lsnwiqsk*k*nllq

Frame C:
fhlfililyi*iii*lkkcviini*ltk*id*yyqiisyqvntiyildqi*rilysaakl
tlqsillnqpkkslsiqltlkfnq*rs*inkllplptmnqkklqf*nskmnyqlqkiqfs
plislvf*mtn*kvsivqnmlsmvkivilvplnskplmlvvlshvlmnll*nlslilksl
fhli*llfqiwiqll*lkimmv---

---n*rspilk*iq*nlcstfettfktfrvssqpkvnhlqipc*eik*tlnwvcwvmlis
llnvrkdsklskqtlqvyhqifvlqyllqs*rmvvklinksslinilnll*slkriltfw
yllwlqkrnwlkkpsislylhplevkiviwfslpsqivfvnslgltspktlikstkhlkt
llclvvslvvvsplkwmilntmksstfskiiqfqllivqlnki*kwlqliqigsklliki
yqigfnqnknkisy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA345 (AHA345Q) /CSM/AH/AHA3-B/AHA345Q.Seq.d/                       2627   0.0
AHB710 (AHB710Q) /CSM/AH/AHB7-A/AHB710Q.Seq.d/                       1495   0.0
VHQ308 (VHQ308Q) /CSM/VH/VHQ3-A/VHQ308Q.Seq.d/                       1485   0.0
AHK448 (AHK448Q) /CSM/AH/AHK4-B/AHK448Q.Seq.d/                       1465   0.0
VHP808 (VHP808Q) /CSM/VH/VHP8-A/VHP808Q.Seq.d/                       1461   0.0
VHP126 (VHP126Q) /CSM/VH/VHP1-B/VHP126Q.Seq.d/                       1461   0.0
VHI595 (VHI595Q) /CSM/VH/VHI5-D/VHI595Q.Seq.d/                       1461   0.0
AHQ592 (AHQ592Q) /CSM/AH/AHQ5-D/AHQ592Q.Seq.d/                       1443   0.0
VHC369 (VHC369Q) /CSM/VH/VHC3-C/VHC369Q.Seq.d/                       1441   0.0
AHD767 (AHD767Q) /CSM/AH/AHD7-C/AHD767Q.Seq.d/                       1439   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   4e-09  24
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   5e-08  19
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   3e-07  20
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            40   9e-07  17
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    40   2e-06  12
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    34   6e-06  10
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40   3e-05  10
AC116918|AC116918.3 Dictyostelium discoideum chromosome 2 map 6143698-6163521 strain AX4, complete sequence.    32   4e-05  8
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    32   5e-05  10
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    32   6e-05  19
dna update 2004. 2.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   232   9e-62
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   149   2e-34
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   149   2e-34
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   149   2e-34
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014...   134   6e-30
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   132   3e-29
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14...   129   2e-28
EF676179_1(EF676179|pid:none) Picea sitchensis clone WS02717_G19...   128   4e-28
AP005572_11(AP005572|pid:none) Oryza sativa Japonica Group genom...   127   7e-28
AM920433_347(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   126   2e-27
protein update 2009. 4.27
PSORT 

 psg: 0.87  gvh: 0.34  alm: 0.45  top: 0.57  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for AHA345 is cyt
5' end seq. ID AHA345F
5' end seq. 
>AHA345F.Seq
AATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTG
TGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACC
AAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGT
TGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACAT
TGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACC
AGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCT
CTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATA
TGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCG
TCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATCAC
TATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAA
TGATGGTACNNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID AHA345Z
3' end seq. 
>AHA345Z.Seq
NNNNNNNNNNTTAATTGAAGATCACCCATACTCAAGTAGATTCAATGAAATCTTTGTTCA
ACTTTTGAAACCACTTTCAAAACGTTTAGGGTTTCGAGCCAACCAAAGGTGAACCATCTT
CAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATA
TCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCAT
CAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAAC
AAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTT
TGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTAT
CTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTGTTC
GTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACATTTAAAA
ACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTC
AATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCAA
TTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAAG
ATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAA
Length of 3' end seq. 767
Connected seq. ID AHA345P
Connected seq. 
>AHA345P.Seq
AATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATGTG
TGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACC
AAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGT
TGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACAT
TGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACC
AGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCT
CTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATA
TGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCG
TCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATCAC
TATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAA
TGATGGTAC----------TTAATTGAAGATCACCCATACTCAAGTAGATTCAATGAAAT
CTTTGTTCAACTTTTGAAACCACTTTCAAAACGTTTAGGGTTTCGAGCCAACCAAAGGTG
AACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTG
ATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAA
GTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAG
CTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATT
CTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATT
TCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAA
ATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAA
CATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGG
ATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTG
ATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTT
TTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAA
Length of connected seq. 1366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -