NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD534
Library VS
(Link to library)
Clone ID VSD534
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD534P
(Link to Original site)
Representative DNA sequence 
>VSD534 (VSD534Q) /CSM/VS/VSD5-B/VSD534Q.Seq.d/
TTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAAATCA
TCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAACCAGA
TCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAACCAGA
TATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCCTCTTTAGCCGTC
AAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTAAAAAAAAAAXXXXXX
XXXXTTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAA
ATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAAC
CAGATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAAC
CAGATATTTGAAGACTGTCCACAAGAGATTCAACAGNGTTTCAAAGAAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
qfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnqilqley*sst*kdhryr*nqi
fedcpqeiqqwfqrslfsrqkncc*INKIFKLNSKKK---

---FSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTG
RTRYLKTVHKRFNXVSKK
Translated Amino Acid sequence (All Frames) 
Frame A:
fsfgrrhtkshtlcrrcgkssfhiqkktcascgypsaktrsynwsikaqrrkttgtgrtr
ylktvhkrfnsgfkeaslavkktaak*ikssn*ivkkk---

---FSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTG
RTRYLKTVHKRFNXVSKK

Frame B:
svlvvdtpsptpyaedavnhhstskrrpvlhvvihppkpdlttgvlklnverppvpvepd
i*rlstrdstvvskkpl*pskklllnk*nlqik**kk---

---svlvvdtpsptpyaedavnhhstskrrpvlhvvihppkpdlttgvlklnverppvpv
epdi*rlstrdstxfqr

Frame C:
qfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnqilqley*sst*kdhryr*nqi
fedcpqeiqqwfqrslfsrqkncc*INKIFKLNSKKK---

---qfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnqilqley*sst*kdhryr*
nqifedcpqeiqqxfke
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK423 (VSK423Q) /CSM/VS/VSK4-A/VSK423Q.Seq.d/                        521   e-147
VSJ502 (VSJ502Q) /CSM/VS/VSJ5-A/VSJ502Q.Seq.d/                        521   e-147
VSJ359 (VSJ359Q) /CSM/VS/VSJ3-C/VSJ359Q.Seq.d/                        521   e-147
VSJ208 (VSJ208Q) /CSM/VS/VSJ2-A/VSJ208Q.Seq.d/                        521   e-147
VSI655 (VSI655Q) /CSM/VS/VSI6-C/VSI655Q.Seq.d/                        521   e-147
VSI187 (VSI187Q) /CSM/VS/VSI1-D/VSI187Q.Seq.d/                        521   e-147
VSI165 (VSI165Q) /CSM/VS/VSI1-C/VSI165Q.Seq.d/                        521   e-147
VSH775 (VSH775Q) /CSM/VS/VSH7-D/VSH775Q.Seq.d/                        521   e-147
VSH588 (VSH588Q) /CSM/VS/VSH5-D/VSH588Q.Seq.d/                        521   e-147
VSG641 (VSG641Q) /CSM/VS/VSG6-B/VSG641Q.Seq.d/                        521   e-147
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY181247|AY181247.1 Candida glabrata putative mating-type locus, partial sequence.    82  3e-13  3
T38640|T38640.1 EST104157 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    56  6e-09  2
AZ924870|AZ924870.1 4906.id55k08.s1 Saccharomyces mikatae IFO 1815 Saccharomyces mikatae genomic clone 4906.id55k08.s1, DNA sequence.    72  8e-09  1
BG661500|BG661500.1 kx02f09.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RL37_CAEEL P49622 PROBABLE 60S RIBOSOMAL PROTEIN L37. [3] TR:O62388 WP:CE05493 ;, mRNA sequence.    70  3e-08  1
AJ390504|AJ390504.1 Candida albicans partial mRNA for ribosomal protein L37 (rpl37 gene).    64  1e-07  2
AX027754|AX027754.1 Sequence 4 from Patent WO0034481.             64  2e-07  2
U33057|U33057.1 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and lambda 3073.    56  8e-07  3
T38861|T38861.1 EST104425 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    64  2e-06  1
U17246|U17246.1 Saccharomyces cerevisiae chromosome XII cosmid 9470.    64  7e-06  3
A63907|A63907.1 Sequence 32 from Patent WO9723633.                42  1e-05  3
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MG6) RecName: Full=60S ribosomal protein L37;                     154   2e-36
CR954207_405(CR954207|pid:none) Ostreococcus tauri strain OTTH05...   109   5e-23
BT076110_1(BT076110|pid:none) Caligus rogercresseyi clone crog-e...   108   6e-23
CP001323_357(CP001323|pid:none) Micromonas sp. RCC299 chromosome...   107   2e-22
(P05733) RecName: Full=60S ribosomal protein L37-B; AltName: Ful...   107   2e-22
AM049129_1(AM049129|pid:none) Timarcha balearica mRNA for riboso...   107   2e-22
EF639014_1(EF639014|pid:none) Triatoma infestans clone TI-498 60...   106   3e-22
AY181247_5(AY181247|pid:none) Candida glabrata putative mating-t...   106   3e-22
(P51402) RecName: Full=60S ribosomal protein L37-B; AltName: Ful...   106   4e-22
AM049128_1(AM049128|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   104   1e-21
protein update 2009. 7.29
PSORT 

 psg: 0.47  gvh: 0.33  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.93  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VSD534 is mit
5' end seq. ID VSD534F
5' end seq. 
>VSD534F.Seq
TTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAAATCA
TCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAACCAGA
TCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAACCAGA
TATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCCTCTTTAGCCGTC
AAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTAAAAAAAAAA------
----
Length of 5' end seq. 294
3' end seq. ID VSD534Z
3' end seq. 
>VSD534Z.Seq
----------TTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATG
CGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGC
CAAAACCAGATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGG
TAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGNGTTTCAAAGAAG
Length of 3' end seq. 225
Connected seq. ID VSD534P
Connected seq. 
>VSD534P.Seq
TTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAAATCA
TCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAACCAGA
TCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAACCAGA
TATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTCAAAGAAGCCTCTTTAGCCGTC
AAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAAATAGTAAAAAAAAAA------
----TTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAA
ATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAAC
CAGATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAAC
CAGATATTTGAAGACTGTCCACAAGAGATTCAACAGNGTTTCAAAGAAG
Length of connected seq. 519
Full length Seq ID -
Full length Seq. -
Length of full length seq. -