VSD531
Library VS
(Link to library)
Clone ID VSD531
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD531P
(Link to Original site)
Representative DNA sequence
>VSD531 (VSD531Q) /CSM/VS/VSD5-B/VSD531Q.Seq.d/
CATAAAATGACTAAAGGTACATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTA
TGCAGAAGATGCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGT
TATCCATCCGCCAAAACCATATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACC
ACCGGTACCGGTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTC
AAAGAAGCCTCTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAA
ATAGTACCTTTATTAAAAAAAAAAXXXXXXXXXXCATAAAATGACTAAAGGTACATTCAG
TTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAAATCATCATT
CCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAACCATATCTTA
CAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAACCAGATATTT
GAAGACTGTCCACAAGAGATTCAACAGGGTTTCAAAGAAGCCTCTTTAGCCGTCAAAAAA
ACTGCTGCTAAATAAATAAAATCTTCAAATTAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
*nd*ryiqfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnhilqley*sst*kdh
ryr*nqifedcpqeiqqwfqrslfsrqkncc*INKIFKLNSTFIKKK---

---HKMTKGTFSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTISYNWSIKAQR
RKTTGTGRTRYLKTVHKRFNRVSKKPL*pskklllnk*nlqik


Translated Amino Acid sequence (All Frames)
Frame A:
hkmtkgtfsfgrrhtkshtlcrrcgkssfhiqkktcascgypsaktisynwsikaqrrkt
tgtgrtrylktvhkrfnsgfkeaslavkktaak*ikssn*ivpllkkk---

---HKMTKGTFSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTISYNWSIKAQR
RKTTGTGRTRYLKTVHKRFNRVSKKPL*pskklllnk*nlqik

Frame B:
ik*lkvhsvlvvdtpsptpyaedavnhhstskrrpvlhvvihppkpylttgvlklnverp
pvpvepdi*rlstrdstvvskkpl*pskklllnk*nlqik*yly*kk---

---ik*lkvhsvlvvdtpsptpyaedavnhhstskrrpvlhvvihppkpylttgvlklnv
erppvpvepdi*rlstrdstgfqrslfsrqkncc*inkifkln

Frame C:
*nd*ryiqfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnhilqley*sst*kdh
ryr*nqifedcpqeiqqwfqrslfsrqkncc*INKIFKLNSTFIKKK---

---*nd*ryiqfws*thqvphlmqkmr*iiiphpkedlcfmwlsirqnhilqley*sst*
kdhryr*nqifedcpqeiqqgfkeaslavkktaak*ikssn*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD531 (VSD531Q) /CSM/VS/VSD5-B/VSD531Q.Seq.d/ 581 e-165
VSJ502 (VSJ502Q) /CSM/VS/VSJ5-A/VSJ502Q.Seq.d/ 573 e-162
VSJ208 (VSJ208Q) /CSM/VS/VSJ2-A/VSJ208Q.Seq.d/ 573 e-162
VSI187 (VSI187Q) /CSM/VS/VSI1-D/VSI187Q.Seq.d/ 573 e-162
VSI165 (VSI165Q) /CSM/VS/VSI1-C/VSI165Q.Seq.d/ 573 e-162
VSG428 (VSG428Q) /CSM/VS/VSG4-B/VSG428Q.Seq.d/ 573 e-162
VSB212 (VSB212Q) /CSM/VS/VSB2-A/VSB212Q.Seq.d/ 573 e-162
VSG641 (VSG641Q) /CSM/VS/VSG6-B/VSG641Q.Seq.d/ 567 e-161
VSG140 (VSG140Q) /CSM/VS/VSG1-B/VSG140Q.Seq.d/ 567 e-161
VSF734 (VSF734Q) /CSM/VS/VSF7-B/VSF734Q.Seq.d/ 567 e-161

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY181247|AY181247.1 Candida glabrata putative mating-type locus, partial sequence. 74 1e-10 3
BG661500|BG661500.1 kx02f09.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RL37_CAEEL P49622 PROBABLE 60S RIBOSOMAL PROTEIN L37. [3] TR:O62388 WP:CE05493 ;, mRNA sequence. 70 4e-08 1
T38640|T38640.1 EST104157 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence. 48 2e-06 2
AZ924870|AZ924870.1 4906.id55k08.s1 Saccharomyces mikatae IFO 1815 Saccharomyces mikatae genomic clone 4906.id55k08.s1, DNA sequence. 64 2e-06 1
AJ390504|AJ390504.1 Candida albicans partial mRNA for ribosomal protein L37 (rpl37 gene). 58 8e-06 2
AX027754|AX027754.1 Sequence 4 from Patent WO0034481. 58 1e-05 2
A63907|A63907.1 Sequence 32 from Patent WO9723633. 42 2e-05 3
CB833088|CB833088.1 USDA-FP_100638 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-09_C01 5', mRNA sequence. 60 4e-05 1
U33057|U33057.1 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and lambda 3073. 48 2e-04 3
CF259398|CF259398.1 402 Trichoplusia ni fifth instar digestive system cDNA library Trichoplusia ni cDNA similar to ribosomal protein, mRNA sequence. 52 3e-04 2
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54MG6) RecName: Full=60S ribosomal protein L37; 162 6e-39
BT076110_1(BT076110|pid:none) Caligus rogercresseyi clone crog-e... 115 1e-24
AM049129_1(AM049129|pid:none) Timarcha balearica mRNA for riboso... 113 5e-24
EF639014_1(EF639014|pid:none) Triatoma infestans clone TI-498 60... 112 7e-24
(P05733) RecName: Full=60S ribosomal protein L37-B; AltName: Ful... 112 7e-24
CR954207_405(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 112 1e-23
AM049128_1(AM049128|pid:none) Sphaerius sp. APV-2005 mRNA for ri... 110 3e-23
CP001323_357(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 110 3e-23
AM049127_1(AM049127|pid:none) Biphyllus lunatus mRNA for ribosom... 110 3e-23
FN315528_1(FN315528|pid:none) Schistosoma japonicum isolate Anhu... 110 4e-23
protein update 2009. 7.29
PSORT

psg: 0.64 gvh: 0.32 alm: 0.62 top: 0.53 tms: 0.00 mit: 0.95 mip: 0.00
nuc: 0.17 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
40.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VSD531 is cyt

5' end seq. ID VSD531F
5' end seq.
>VSD531F.Seq
CATAAAATGACTAAAGGTACATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTA
TGCAGAAGATGCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGT
TATCCATCCGCCAAAACCATATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACC
ACCGGTACCGGTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTC
AAAGAAGCCTCTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAA
ATAGTACCTTTATTAAAAAAAAAA----------
Length of 5' end seq. 324
3' end seq. ID VSD531Z
3' end seq.
>VSD531Z.Seq
----------CATAAAATGACTAAAGGTACATTCAGTTTTGGTCGTAGACACACCAAGTC
CCACACCTTATGCAGAAGATGCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGC
TTCATGTGGTTATCCATCCGCCAAAACCATATCTTACAACTGGAGTATTAAAGCTCAACG
TAGAAAGACCACCGGTACCGGTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAA
CAGGGTTTCAAAGAAGCCTCTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCT
TCAAATTAAAT
Length of 3' end seq. 301
Connected seq. ID VSD531P
Connected seq.
>VSD531P.Seq
CATAAAATGACTAAAGGTACATTCAGTTTTGGTCGTAGACACACCAAGTCCCACACCTTA
TGCAGAAGATGCGGTAAATCATCATTCCACATCCAAAAGAAGACCTGTGCTTCATGTGGT
TATCCATCCGCCAAAACCATATCTTACAACTGGAGTATTAAAGCTCAACGTAGAAAGACC
ACCGGTACCGGTAGAACCAGATATTTGAAGACTGTCCACAAGAGATTCAACAGTGGTTTC
AAAGAAGCCTCTTTAGCCGTCAAAAAAACTGCTGCTAAATAAATAAAATCTTCAAATTAA
ATAGTACCTTTATTAAAAAAAAAA----------CATAAAATGACTAAAGGTACATTCAG
TTTTGGTCGTAGACACACCAAGTCCCACACCTTATGCAGAAGATGCGGTAAATCATCATT
CCACATCCAAAAGAAGACCTGTGCTTCATGTGGTTATCCATCCGCCAAAACCATATCTTA
CAACTGGAGTATTAAAGCTCAACGTAGAAAGACCACCGGTACCGGTAGAACCAGATATTT
GAAGACTGTCCACAAGAGATTCAACAGGGTTTCAAAGAAGCCTCTTTAGCCGTCAAAAAA
ACTGCTGCTAAATAAATAAAATCTTCAAATTAAAT
Length of connected seq. 625
Full length Seq ID -
Full length Seq. -
Length of full length seq. -