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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD529
Library VS
(Link to library)
Clone ID VSD529
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06563-1
Original site URL
Representative seq. ID VSD529P
(Link to Original site)
Representative DNA sequence 
>VSD529 (VSD529Q) /CSM/VS/VSD5-B/VSD529Q.Seq.d/
TGAAACTATTTTTATTAATTATTAATTTAATTTATTTGATTAATTATTCAAATTGTTCAA
CTATATTATTTGCCAATTTTTTTTCATACGCAACAAGTGATTGTAGTGGAGAATCAATTG
GATTTGGATATTCTTTAAAAATTGATGAATGTTTGGGTGCATTTCAACCATTTCAACAAG
TTGATGATAATTTTTGGAAAATTGAATTTAATAAAGAATCAAATTCAATAATTACAACAA
GATATAGTGAATGGAATTTTAATTGTAATGGTTCAAGTGATACTCAACACTGNAXXXXXX
XXXXTACTCAACAATTTATTATTGGAAATAATGAATGTTCAATAATGCCAAATTTCACAG
TGATTGAAACTGGTACAATCTCTGGTATGAGTGATATTTGGTATACTCGTGCTTCTATTA
GTATTGGTAAACCAGAATATACACCAGGTTCCTTATTATCAGTTAGAGAATATTATAATG
ATAATTCTAGAGGTAATTGTGATATGAATAATTTTCAAACTGCCGTTACCTACTCTCAAA
ATTTAAAACTTTCCATTCAAGATACAAATGAATCAGAAACTTGGTTTTGTAAAAATAATG
AAGCACTCGAAAACTTTTGTGATTTCAATGGTAAAAATTGTCAAATATTCGATAATACCA
TATCATGCAATCCTTCAGAACAATCGGAAACCAAAATGGTATTGTGTAACACCTNATTGC
NACTCAAATAGGAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
KLFLLIINLIYLINYSNCSTILFANFFSYATSDCSGESIGFGYSLKIDECLGAFQPFQQV
DDNFWKIEFNKESNSIITTRYSEWNFNCNGSSDTQHX---

---TQQFIIGNNECSIMPNFTVIETGTISGMSDIWYTRASISIGKPEYTPGSLLSVREYY
NDNSRGNCDMNNFQTAVTYSQNLKLSIQDTNESETWFCKNNEALENFCDFNGKNCQIFDN
TISCNPSEQSETKMVLCNTXLXLK*e
Translated Amino Acid sequence (All Frames) 
Frame A:
*nyfy*lli*fi*liiqivqlyylpiffhtqqvivvenqldldil*klmnvwvhfnhfnk
lmiifgklnliknqiq*lqqdivngilivmvqvilntx---

---ystiyywk**mfnnakfhsd*nwynlwye*ylvyscfy*yw*triytrfliis*ril
***f*r*l*ye*fsncryllskfktfhsryk*irnlvl*k**strkll*fqw*klsnir*
yhimqsfrtignqngiv*hliatqign

Frame B:
etifiny*fnlfd*lfklfnyiicqfffirnk*l*wrinwiwiffkn**mfgcistists
***flen*i**rikfnnynki**mef*l*wfk*ystl---

---TQQFIIGNNECSIMPNFTVIETGTISGMSDIWYTRASISIGKPEYTPGSLLSVREYY
NDNSRGNCDMNNFQTAVTYSQNLKLSIQDTNESETWFCKNNEALENFCDFNGKNCQIFDN
TISCNPSEQSETKMVLCNTXLXLK*e

Frame C:
KLFLLIINLIYLINYSNCSTILFANFFSYATSDCSGESIGFGYSLKIDECLGAFQPFQQV
DDNFWKIEFNKESNSIITTRYSEWNFNCNGSSDTQHX---

---lnnllleimnvq*cqisq*lklvqslv*vifgilvlllvlvnqnihqvpyyqlenii
miilevivi*iifklplptlki*nfpfkiqmnqklgfvkimkhsktfvismvkivkysii
pyhailqnnrkpkwycvtpxcxsnrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD529 (VSD529Q) /CSM/VS/VSD5-B/VSD529Q.Seq.d/                       1239   0.0
VSG479 (VSG479Q) /CSM/VS/VSG4-D/VSG479Q.Seq.d/                        771   0.0
VSG725 (VSG725Q) /CSM/VS/VSG7-B/VSG725Q.Seq.d/                        468   e-131
SHC248 (SHC248Q) /CSM/SH/SHC2-B/SHC248Q.Seq.d/                         38   0.18
SHA355 (SHA355Q) /CSM/SH/SHA3-C/SHA355Q.Seq.d/                         38   0.18
CHN274 (CHN274Q) /CSM/CH/CHN2-D/CHN274Q.Seq.d/                         38   0.18
AHH728 (AHH728Q) /CSM/AH/AHH7-B/AHH728Q.Seq.d/                         38   0.18
AFL480 (AFL480Q) /CSM/AF/AFL4-D/AFL480Q.Seq.d/                         38   0.18
VHQ440 (VHQ440Q) /CSM/VH/VHQ4-B/VHQ440Q.Seq.d/                         36   0.73
VHP560 (VHP560Q) /CSM/VH/VHP5-C/VHP560Q.Seq.d/                         36   0.73
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH520606|BH520606.1 BOGDG46TR BOGD Brassica oleracea genomic clone BOGDG46, DNA sequence.    34  0.20  3
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    42  0.22  7
AC140288|AC140288.1 Mus musculus chromosome UNK clone RP23-348K1, WORKING DRAFT SEQUENCE, 158 unordered pieces.    38  0.23  6
Z30662|Z30662.1 Caenorhabditis elegans cosmid T16H12.             46  0.61  1
AB083339|AB083339.1 Bombyx mori mitochondrial DNA, complete genome, strain:Aojuku.    36  0.63  4
AF149768|AF149768.1 Bombyx mori mitochondrion, complete genome.    36  0.63  4
AY048187|AY048187.1 Bombyx mori strain Xiafang mitochondrion, complete genome.    36  0.63  4
AC146453|AC146453.1 Pan troglodytes chromosome UNK clone CH251-510F17, *** SEQUENCING IN PROGRESS ***, 54 unordered pieces.    40  1.1  7
AL023828|AL023828.1 Caenorhabditis elegans YAC Y17G7B.            34  1.3  6
AJ293568|AJ293568.1 Yaba-like disease virus (YLDV), complete genome.    38  1.3  4
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_69(AC117075|pid:none) Dictyostelium discoideum chromoso...    63   1e-08
AC116984_110(AC116984|pid:none) Dictyostelium discoideum chromos...    57   6e-07
AC116924_6(AC116924|pid:none) Dictyostelium discoideum chromosom...    50   7e-05
AC116924_5(AC116924|pid:none) Dictyostelium discoideum chromosom...    50   7e-05
AC115680_23(AC115680|pid:none) Dictyostelium discoideum chromoso...    47   6e-04
AC116977_114(AC116977|pid:none) Dictyostelium discoideum chromos...    39   0.13
AC116984_4(AC116984|pid:none) Dictyostelium discoideum chromosom...    37   0.64
(Q2NKC5) RecName: Full=Chromosomal replication initiator protein...    37   0.84
AE014188_199(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.9
FJ422960_1(FJ422960|pid:none) Pedobacter sp. MJ11 beta-propeller...    35   2.4
protein update 2009. 7.29
PSORT 

 psg: 0.93  gvh: 0.56  alm: 0.34  top: 0.33  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: extracellular, including cell wall
	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VSD529 is exc
5' end seq. ID VSD529F
5' end seq. 
>VSD529F.Seq
TGAAACTATTTTTATTAATTATTAATTTAATTTATTTGATTAATTATTCAAATTGTTCAA
CTATATTATTTGCCAATTTTTTTTCATACGCAACAAGTGATTGTAGTGGAGAATCAATTG
GATTTGGATATTCTTTAAAAATTGATGAATGTTTGGGTGCATTTCAACCATTTCAACAAG
TTGATGATAATTTTTGGAAAATTGAATTTAATAAAGAATCAAATTCAATAATTACAACAA
GATATAGTGAATGGAATTTTAATTGTAATGGTTCAAGTGATACTCAACACTGNA------
----
Length of 5' end seq. 294
3' end seq. ID VSD529Z
3' end seq. 
>VSD529Z.Seq
----------TACTCAACAATTTATTATTGGAAATAATGAATGTTCAATAATGCCAAATT
TCACAGTGATTGAAACTGGTACAATCTCTGGTATGAGTGATATTTGGTATACTCGTGCTT
CTATTAGTATTGGTAAACCAGAATATACACCAGGTTCCTTATTATCAGTTAGAGAATATT
ATAATGATAATTCTAGAGGTAATTGTGATATGAATAATTTTCAAACTGCCGTTACCTACT
CTCAAAATTTAAAACTTTCCATTCAAGATACAAATGAATCAGAAACTTGGTTTTGTAAAA
ATAATGAAGCACTCGAAAACTTTTGTGATTTCAATGGTAAAAATTGTCAAATATTCGATA
ATACCATATCATGCAATCCTTCAGAACAATCGGAAACCAAAATGGTATTGTGTAACACCT
NATTGCNACTCAAATAGGAAAT
Length of 3' end seq. 432
Connected seq. ID VSD529P
Connected seq. 
>VSD529P.Seq
TGAAACTATTTTTATTAATTATTAATTTAATTTATTTGATTAATTATTCAAATTGTTCAA
CTATATTATTTGCCAATTTTTTTTCATACGCAACAAGTGATTGTAGTGGAGAATCAATTG
GATTTGGATATTCTTTAAAAATTGATGAATGTTTGGGTGCATTTCAACCATTTCAACAAG
TTGATGATAATTTTTGGAAAATTGAATTTAATAAAGAATCAAATTCAATAATTACAACAA
GATATAGTGAATGGAATTTTAATTGTAATGGTTCAAGTGATACTCAACACTGNA------
----TACTCAACAATTTATTATTGGAAATAATGAATGTTCAATAATGCCAAATTTCACAG
TGATTGAAACTGGTACAATCTCTGGTATGAGTGATATTTGGTATACTCGTGCTTCTATTA
GTATTGGTAAACCAGAATATACACCAGGTTCCTTATTATCAGTTAGAGAATATTATAATG
ATAATTCTAGAGGTAATTGTGATATGAATAATTTTCAAACTGCCGTTACCTACTCTCAAA
ATTTAAAACTTTCCATTCAAGATACAAATGAATCAGAAACTTGGTTTTGTAAAAATAATG
AAGCACTCGAAAACTTTTGTGATTTCAATGGTAAAAATTGTCAAATATTCGATAATACCA
TATCATGCAATCCTTCAGAACAATCGGAAACCAAAATGGTATTGTGTAACACCTNATTGC
NACTCAAATAGGAAAT
Length of connected seq. 726
Full length Seq ID -
Full length Seq. -
Length of full length seq. -