VSD513 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VSD513
Library	VS (Link to library)
Clone ID	VSD513 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U06560-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VS/VSD5-A/VSD513Q.Seq.d/
Representative seq. ID	VSD513P (Link to Original site)
Representative DNA sequence	>VSD513 (VSD513Q) /CSM/VS/VSD5-A/VSD513Q.Seq.d/ GATTAATCCAAGTAATCAATTTGATTATTATTTAATGGACAATTGGGTCAAATTAATATG ATTAGACAACAATATCCAAATGTTGAAATGATTTATAATAAATTAACACAAATTCTACAT AGATTATCAACATTAAAGAATCAATCAAATTCATTACTTTCAAATCAAAATACACTTCAA TCATTACAAAATGTAATTGTTCAAGGTAAAGATCATATTGGAGCCTATAATGAATGGATT AAAAGAACTTATCCAATGGGTGCTTCTGATCCTTCCTCAACTCAACCTCGTTTCTTAACT ATTAATTTTATGAAATGGTATAATAATTTACATACTGTTTGGGGTCAAATTTTAGATTTA AAACAACAATTATAATAATAATCAATAATAATATATTTTTAATAAAATCTTTTTTATTTA TTTAACAAATTATTTAAAAAAAAAAXXXXXXXXXXGATTAATCCAAGTAATCAATTTGAT TATTATTTAATGGACAATTGGGTCAAATTAATATGATTAGACAACAATATCCAAATGTTG AAATGATTTATAATAAATTAACACAAATTCTACATAGATTATCAACATTAAAGAATCAAT CAAATTCATTACTTTCAAATCAAAATACACTTCAATCATTACAAAATGTAATTGTTCAAG GTAAAGATCATATTGGAGCCTATAATGAATGGATTAAAAGAACTTATCCAATGGGTGCTT CTGATCCTTCCTCAACTCAACCTCGTTTCTTAACTATTAATTTTATGAAATGGTATAATA ATTTACATACTGTTTGGGGTCAAATTTTAGATTTAAAACAACAATTATAATAATAATCAA TAATNATATATTTTTA
sequence update	2001. 3.22
Translated Amino Acid sequence	inpsnqfdyylmdnwvklildnniqmlkfiinhkfyidyqhrinqihyfqikihfn hykmlfkvkiilepimnglkeliqwvllilpqlnlvsllilngiiiyilfgvkfi* nnnynnnq*YIFNKIFFIYLTNYLKKK--- ---INPSNQFDYYLMDNWVKLIldnniqmlkfiinhkfyidyqhrinqihyfqiki hfnhykmlfkvkiilepimnglkeliqwvllilpqlnlvsllilngiiiyilfgvkf innnynnnq*xyif
Translated Amino Acid sequence (All Frames)	Frame A: dsksillfngqlgqinmirqqypnvemiynkltqilhrlstlknqsnsllsnqntlq slqnvivqgkdhigaynewikrtypmgasdpsstqprfltinfmkwynnlhtvwgqildl kqqlsiiiyfnlfylfnklfkkk--- ---dsksillfngqlgqinmirqqypnvemiynkltqilhrlstlknqsnsllsnqn tlqslqnvivqgkdhigaynewikrtypmgasdpsstqprfltinfmkwynnlhtvwgqi ldlkqql*sixiyf Frame B: inpsnqfdyylmdnwvklildnniqmlkfiinhkfyidyqhrinqihyfqikihfn hykmlfkvkiilepimnglkeliqwvllilpqlnlvsllilngiiiyilfgvkfi nnnynnnq*YIFNKIFFIYLTNYLKKK--- ---INPSNQFDYYLMDNWVKLIldnniqmlkfiinhkfyidyqhrinqihyfqiki hfnhykmlfkvkiilepimnglkeliqwvllilpqlnlvsllilngiiiyilfgvkf innnynnnqxyif Frame C: liqvinliiiwtigsnydttiskcndlintnstiinikesikfitfkskytsi itkcncsrrsywslmdknlsngcfsflnstsflnyfyemv*ftyclgsnfrfk ttiiiiinnnifliksflfiqiikk--- ---liqvinliiiwtigsnydttiskcndlintnstiinikesikfitfksky tsiitkcncsrrsywslmdknlsngcfsflnstsflnyfyemv**ftyclgsnf rfkttiiiiinnxifl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VSD513 (VSD513Q) /CSM/VS/VSD5-A/VSD513Q.Seq.d/ 789 0.0 VSD339 (VSD339Q) /CSM/VS/VSD3-B/VSD339Q.Seq.d/ 42 0.014 VSC743 (VSC743Q) /CSM/VS/VSC7-B/VSC743Q.Seq.d/ 42 0.014 VHG821 (VHG821Q) /CSM/VH/VHG8-A/VHG821Q.Seq.d/ 42 0.014 SSK196 (SSK196Q) /CSM/SS/SSK1-D/SSK196Q.Seq.d/ 42 0.014 SHD412 (SHD412Q) /CSM/SH/SHD4-A/SHD412Q.Seq.d/ 42 0.014 SHA610 (SHA610Q) /CSM/SH/SHA6-A/SHA610Q.Seq.d/ 42 0.014 CHN253 (CHN253Q) /CSM/CH/CHN2-C/CHN253Q.Seq.d/ 42 0.014 CHL361 (CHL361Q) /CSM/CH/CHL3-C/CHL361Q.Seq.d/ 42 0.014 CHI677 (CHI677Q) /CSM/CH/CHI6-D/CHI677Q.Seq.d/ 42 0.014
own update	2003. 1. 9
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 42 3e-06 11 AL929358\|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5. 42 8e-05 11 AC116330\|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 38 3e-04 9 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 8e-04 10 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 8e-04 11 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 32 0.002 10 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 32 0.002 11 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 34 0.003 13 AE014851\|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence. 34 0.005 10 AC115599\|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 38 0.007 8
dna update	2003. 8.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AE017263_380(AE017263\|pid:none) Mesoplasma florum L1 complete ge... 33 9.3
protein update	2009. 3.21
PSORT	psg: 0.88 gvh: 0.19 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: nuclear 24.0 %: cytoplasmic 12.0 %: cytoskeletal 8.0 %: mitochondrial 4.0 %: extracellular, including cell wall >> prediction for VSD513 is nuc
5' end seq. ID	VSD513F
5' end seq.	>VSD513F.Seq GATTAATCCAAGTAATCAATTTGATTATTATTTAATGGACAATTGGGTCAAATTAATATG ATTAGACAACAATATCCAAATGTTGAAATGATTTATAATAAATTAACACAAATTCTACAT AGATTATCAACATTAAAGAATCAATCAAATTCATTACTTTCAAATCAAAATACACTTCAA TCATTACAAAATGTAATTGTTCAAGGTAAAGATCATATTGGAGCCTATAATGAATGGATT AAAAGAACTTATCCAATGGGTGCTTCTGATCCTTCCTCAACTCAACCTCGTTTCTTAACT ATTAATTTTATGAAATGGTATAATAATTTACATACTGTTTGGGGTCAAATTTTAGATTTA AAACAACAATTATAATAATAATCAATAATAATATATTTTTAATAAAATCTTTTTTATTTA TTTAACAAATTATTTAAAAAAAAAA----------
Length of 5' end seq.	445
3' end seq. ID	VSD513Z
3' end seq.	>VSD513Z.Seq ----------GATTAATCCAAGTAATCAATTTGATTATTATTTAATGGACAATTGGGTCA AATTAATATGATTAGACAACAATATCCAAATGTTGAAATGATTTATAATAAATTAACACA AATTCTACATAGATTATCAACATTAAAGAATCAATCAAATTCATTACTTTCAAATCAAAA TACACTTCAATCATTACAAAATGTAATTGTTCAAGGTAAAGATCATATTGGAGCCTATAA TGAATGGATTAAAAGAACTTATCCAATGGGTGCTTCTGATCCTTCCTCAACTCAACCTCG TTTCTTAACTATTAATTTTATGAAATGGTATAATAATTTACATACTGTTTGGGGTCAAAT TTTAGATTTAAAACAACAATTATAATAATAATCAATAATNATATATTTTTA
Length of 3' end seq.	401
Connected seq. ID	VSD513P
Connected seq.	>VSD513P.Seq GATTAATCCAAGTAATCAATTTGATTATTATTTAATGGACAATTGGGTCAAATTAATATG ATTAGACAACAATATCCAAATGTTGAAATGATTTATAATAAATTAACACAAATTCTACAT AGATTATCAACATTAAAGAATCAATCAAATTCATTACTTTCAAATCAAAATACACTTCAA TCATTACAAAATGTAATTGTTCAAGGTAAAGATCATATTGGAGCCTATAATGAATGGATT AAAAGAACTTATCCAATGGGTGCTTCTGATCCTTCCTCAACTCAACCTCGTTTCTTAACT ATTAATTTTATGAAATGGTATAATAATTTACATACTGTTTGGGGTCAAATTTTAGATTTA AAACAACAATTATAATAATAATCAATAATAATATATTTTTAATAAAATCTTTTTTATTTA TTTAACAAATTATTTAAAAAAAAAA----------GATTAATCCAAGTAATCAATTTGAT TATTATTTAATGGACAATTGGGTCAAATTAATATGATTAGACAACAATATCCAAATGTTG AAATGATTTATAATAAATTAACACAAATTCTACATAGATTATCAACATTAAAGAATCAAT CAAATTCATTACTTTCAAATCAAAATACACTTCAATCATTACAAAATGTAATTGTTCAAG GTAAAGATCATATTGGAGCCTATAATGAATGGATTAAAAGAACTTATCCAATGGGTGCTT CTGATCCTTCCTCAACTCAACCTCGTTTCTTAACTATTAATTTTATGAAATGGTATAATA ATTTACATACTGTTTGGGGTCAAATTTTAGATTTAAAACAACAATTATAATAATAATCAA TAATNATATATTTTTA
Length of connected seq.	846
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas