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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD491
Library VS
(Link to library)
Clone ID VSD491
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06554-1
Original site URL
Representative seq. ID VSD491P
(Link to Original site)
Representative DNA sequence 
>VSD491 (VSD491Q) /CSM/VS/VSD4-D/VSD491Q.Seq.d/
AAATTTTAAATTTATTTTTAATTATTTTATCTTTAGCCTTTTTATGTTTTGGTAATTTGG
CAAATGCCAGATATATTGGATGCCAAACTTGTGAAACCTTAGTACAAGAAGCAATAGATT
CCGTACCAAAATATGGAGTTACAAAACAAGAAATTAACGATAAGATTTACAGTTTATGTA
ACTCAATTCCAACACTAAGCTCACGTTGTAAATTGATTGTTGCAATTTATGGAGAAACCT
TAGTTGATTCTATATTAGATGGTGAAAGTGCTAACCAAACTTGTAAATTCCTTAATGAGT
GTTATTAGAAATGTTAAGACCTCTCCAAAAACAACCACAAATTAATTAATTAATTAATAA
ATAAATAAATAAACAATAATTTATTTATTTCAAAAAAAAAAXXXXXXXXXXAAATTTTAA
ATTTATTTTTAATTATTTTATCTTTAGCCTTTTTATGTTTTGGTAATTTGGCAAATGCCA
GATATATTGGATGCCAAACTTGTGAAACCTTAGTACAAGAAGCAATAGATTCCGTACCAA
AATATGGAGTTACAAAACAAGAAATTAACGATAAGATTTACAGTTTATGTAACTCAATTC
CAACACTAAGCTCACGTTGTAAATTGATTGTTGCAATTTATGGAGAAACCTTAGTTGATT
CTATATTAGATGGTGAAAGTGCTAACCAAACTTGTAAATTCCTTAATGAGTGTTATTAGA
AATGTTAAGACCTCTCCAAAAACAACCACAAATTAATAATNATTAATAAATAAATAAATA
AACAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
ilnlfliilslaflcfgnlanaryigcqtcetlvqeaidsvpkygvtkqeindkiyslcn
siptlssrcklivaiygetlvdsildgesanqtckflnecy*kc*dlsknnhklin*lin
k*INNNLFISKKK---

---ILNLFLIILSLAFLCFGNLANARYIGCQTCETLVQEAIDSVPKYGVTKQEINDKIYS
LCNSIPTLSSRCKLIVAIYGETLVDSILDGESANQTCKFLNECY*kc*dlsknnhklixi
nk*inkq
Translated Amino Acid sequence (All Frames) 
Frame A:
kf*iyf*lfyl*pfyvlviwqmpdildaklvkp*ykkq*ipyqnmelqnkkltirftvyv
tqfqh*ahvvn*llqfmekp*lily*mvkvltklvnslmsvirnvktspktttn*lin**
ink*tiiylfqkk---

---kf*iyf*lfyl*pfyvlviwqmpdildaklvkp*ykkq*ipyqnmelqnkkltirft
vyvtqfqh*ahvvn*llqfmekp*lily*mvkvltklvnslmsvirnvktspktttn**x
link*in

Frame B:
nfkfifnyfifslfmfw*fgkcqiywmpnl*nlstrsnrfrtkiwsyktrn*r*dlqfm*
lnsntkltl*idccnlwrnls*fyirw*kc*pnl*ip**vllemlrplqkqpqin*link
*inkq*fiyfkkk---

---nfkfifnyfifslfmfw*fgkcqiywmpnl*nlstrsnrfrtkiwsyktrn*r*dlq
fm*lnsntkltl*idccnlwrnls*fyirw*kc*pnl*ip**vllemlrplqkqpqinnx
**ink*t

Frame C:
ilnlfliilslaflcfgnlanaryigcqtcetlvqeaidsvpkygvtkqeindkiyslcn
siptlssrcklivaiygetlvdsildgesanqtckflnecy*kc*dlsknnhklin*lin
k*INNNLFISKKK---

---ILNLFLIILSLAFLCFGNLANARYIGCQTCETLVQEAIDSVPKYGVTKQEINDKIYS
LCNSIPTLSSRCKLIVAIYGETLVDSILDGESANQTCKFLNECY*kc*dlsknnhklixi
nk*inkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG512 (VSG512Q) /CSM/VS/VSG5-A/VSG512Q.Seq.d/                        571   e-162
VSE130 (VSE130Q) /CSM/VS/VSE1-B/VSE130Q.Seq.d/                        571   e-162
VSD491 (VSD491Q) /CSM/VS/VSD4-D/VSD491Q.Seq.d/                        571   e-162
VSE786 (VSE786Q) /CSM/VS/VSE7-D/VSE786Q.Seq.d/                        539   e-152
VFM637 (VFM637Q) /CSM/VF/VFM6-B/VFM637Q.Seq.d/                         34   3.1
VFL375 (VFL375Q) /CSM/VF/VFL3-D/VFL375Q.Seq.d/                         34   3.1
VFJ328 (VFJ328Q) /CSM/VF/VFJ3-B/VFJ328Q.Seq.d/                         34   3.1
VFJ189 (VFJ189Q) /CSM/VF/VFJ1-D/VFJ189Q.Seq.d/                         34   3.1
VFI411 (VFI411Q) /CSM/VF/VFI4-A/VFI411Q.Seq.d/                         34   3.1
VFH889 (VFH889Q) /CSM/VF/VFH8-D/VFH889Q.Seq.d/                         34   3.1
own update 2003.10.28
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC026952|AC026952.4 Homo sapiens chromosome 18 clone RP11-459J8 map 18, WORKING DRAFT SEQUENCE.    44  2.6  1
AL929192|AL929192.16 Zebrafish DNA sequence from clone CH211-250E5 in linkage group 22.    36  5.0  2
BX248090|BX248090.7 Zebrafish DNA sequence from clone DKEY-156K12 in linkage group 20.    36  8.6  2
AL591144|AL591144.6 Zebrafish DNA sequence from clone XX-104N07 on chromosome 8.    36  9.6  3
AC105104|AC105104.7 Homo sapiens chromosome 18, clone RP11-909J22, complete sequence.    42     10  2
AC134978|AC134978.4 Homo sapiens chromosome 18, clone RP11-671C19, complete sequence.    42     10  2
AL928625|AL928625.4 Mouse DNA sequence from clone RP24-528P17 on chromosome 4.    42     10  1
AC128119|AC128119.3 Rattus norvegicus clone CH230-415H17, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42     10  1
AL162429|AL162429.12 Human DNA sequence from clone RP11-290M17 on chromosome 1.    42     10  1
AC136760|AC136760.1 Homo sapiens chromosome 8 clone RP11-971A1 map 8, LOW-PASS SEQUENCE SAMPLING.    42     10  1
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...    46   0.002
S21770(S21770)saposin-C - bovine                                       46   0.002
(O13035) RecName: Full=Proactivator polypeptide; Contains:   Rec...    46   0.002
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ...    45   0.003
BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ...    45   0.003
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA...    45   0.003
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu...    45   0.003
AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom...    44   0.005
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210...    38   0.43
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147...    38   0.43
protein update 2009. 7.29
PSORT 

 psg: 0.98  gvh: 0.74  alm: 0.39  top: 0.20  tms: 0.00  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSD491 is exc
5' end seq. ID VSD491F
5' end seq. 
>VSD491F.Seq
AAATTTTAAATTTATTTTTAATTATTTTATCTTTAGCCTTTTTATGTTTTGGTAATTTGG
CAAATGCCAGATATATTGGATGCCAAACTTGTGAAACCTTAGTACAAGAAGCAATAGATT
CCGTACCAAAATATGGAGTTACAAAACAAGAAATTAACGATAAGATTTACAGTTTATGTA
ACTCAATTCCAACACTAAGCTCACGTTGTAAATTGATTGTTGCAATTTATGGAGAAACCT
TAGTTGATTCTATATTAGATGGTGAAAGTGCTAACCAAACTTGTAAATTCCTTAATGAGT
GTTATTAGAAATGTTAAGACCTCTCCAAAAACAACCACAAATTAATTAATTAATTAATAA
ATAAATAAATAAACAATAATTTATTTATTTCAAAAAAAAAA----------
Length of 5' end seq. 401
3' end seq. ID VSD491Z
3' end seq. 
>VSD491Z.Seq
----------AAATTTTAAATTTATTTTTAATTATTTTATCTTTAGCCTTTTTATGTTTT
GGTAATTTGGCAAATGCCAGATATATTGGATGCCAAACTTGTGAAACCTTAGTACAAGAA
GCAATAGATTCCGTACCAAAATATGGAGTTACAAAACAAGAAATTAACGATAAGATTTAC
AGTTTATGTAACTCAATTCCAACACTAAGCTCACGTTGTAAATTGATTGTTGCAATTTAT
GGAGAAACCTTAGTTGATTCTATATTAGATGGTGAAAGTGCTAACCAAACTTGTAAATTC
CTTAATGAGTGTTATTAGAAATGTTAAGACCTCTCCAAAAACAACCACAAATTAATAATN
ATTAATAAATAAATAAATAAACAA
Length of 3' end seq. 374
Connected seq. ID VSD491P
Connected seq. 
>VSD491P.Seq
AAATTTTAAATTTATTTTTAATTATTTTATCTTTAGCCTTTTTATGTTTTGGTAATTTGG
CAAATGCCAGATATATTGGATGCCAAACTTGTGAAACCTTAGTACAAGAAGCAATAGATT
CCGTACCAAAATATGGAGTTACAAAACAAGAAATTAACGATAAGATTTACAGTTTATGTA
ACTCAATTCCAACACTAAGCTCACGTTGTAAATTGATTGTTGCAATTTATGGAGAAACCT
TAGTTGATTCTATATTAGATGGTGAAAGTGCTAACCAAACTTGTAAATTCCTTAATGAGT
GTTATTAGAAATGTTAAGACCTCTCCAAAAACAACCACAAATTAATTAATTAATTAATAA
ATAAATAAATAAACAATAATTTATTTATTTCAAAAAAAAAA----------AAATTTTAA
ATTTATTTTTAATTATTTTATCTTTAGCCTTTTTATGTTTTGGTAATTTGGCAAATGCCA
GATATATTGGATGCCAAACTTGTGAAACCTTAGTACAAGAAGCAATAGATTCCGTACCAA
AATATGGAGTTACAAAACAAGAAATTAACGATAAGATTTACAGTTTATGTAACTCAATTC
CAACACTAAGCTCACGTTGTAAATTGATTGTTGCAATTTATGGAGAAACCTTAGTTGATT
CTATATTAGATGGTGAAAGTGCTAACCAAACTTGTAAATTCCTTAATGAGTGTTATTAGA
AATGTTAAGACCTCTCCAAAAACAACCACAAATTAATAATNATTAATAAATAAATAAATA
AACAA
Length of connected seq. 775
Full length Seq ID -
Full length Seq. -
Length of full length seq. -