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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD488
Library VS
(Link to library)
Clone ID VSD488
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15745-1
Original site URL
Representative seq. ID VSD488P
(Link to Original site)
Representative DNA sequence 
>VSD488 (VSD488Q) /CSM/VS/VSD4-D/VSD488Q.Seq.d/
TTTGTATTTTAAACTAATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCT
TACGACGAAGTCTTAGCTGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGT
AAAAACAAAATCGTCTTATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAA
ATCAACCAACCATCTGAACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAA
TCAAAACGTTCAAAATTCGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCC
AAAGCTAATGTCTCTGTCCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTT
GAAGTCCATTACACCGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGT
AAATCAAGTGGTGCTGATTACTTCTGGTAACAAATCAACCAACTAAACGTTACACGCATC
TAAAAATGTATACATATTTTAAAAAAAAAAAAATTAAAAACAAANCAAAAAAAAAAXXXX
XXXXXXTTTGTATTTTAAACTAATTTCNCAATGGCCGATGTTTCCTCCACANAATTAAAA
GCTGCTTACGACGAAGTNTTAGCTGATTCAAATGANACCAACTGGTGTTTATTCAAATAC
GAAGGTAAAAACAAAATCGTCTTATCCGGTAAAGGTANCGGTGGTTTTGCTGAATTAGCC
CAAGAAATCAACCAACCATCTGAACGTTTATATGCANACTTAANAGTTGNATCTGGTGAT
GATGAATCAAAACGTTCAAAATTCGTTTTCATCTCATGGTGTGGTGAANAAGTTGGTCCC
CNTGCCAAAGCTAATGTCTCTGNCCNCAAAGCTTCAGTCAAACAAGTCATCAAAAACATT
GGTGTTGAAGTCCATTACNCCGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAA
GTTCGTAAATCAAGTGGTGCTGATTACTCTGGNAACAAATCAACCAACTAAACGTTACAC
GCATCTAAAAATGTANACATATTTTAAAAAAAAAAAAATTAAAAACNNA
sequence update 2001. 3.22
Translated Amino Acid sequence 
ciln*fhngrcflhriksclrrsls*fk*yqlvfiqirr*kqnrlir*r*rwfc*isprn
qpti*tficilksciw***iktfkirfhlmvw*rswspcqs*clcpqsfsqtshqkhwc*
splhrr**sq*rrindqss*ikwc*LLLVTNQPTKRYTHLKMYTYFKKKKIKNKXKKK--
-

---LYFKLISQWPMFPPXN*kllttkx*liqmxptgvysntkvktkssypvkvxvvlln*
pkkstnhlnvymxt*xlxlvmmnqnvqnsfsshgvvxklvpxpklmslxxklqsnksskt
lvlksitpslmismkkn**pkfvnqvvlitlxtnqptkrythlkmxtyfkkkkiknx
Translated Amino Acid sequence (All Frames) 
Frame A:
fvf*tnftmadvsstelkaaydevladsndtnwclfkyegknkivlsgkgsggfaelaqe
inqpserlyaylrvvsgddeskrskfvfiswcgeevgplakanvsvhkasvkqviknigv
evhytvaddlneeelmtkvrkssgadyfw*qinqlnvtri*kcihilkkkklktxqkk--
-

---fvf*tnfxmadvsstxlkaaydevladsnxtnwclfkyegknkivlsgkgxggfael
aqeinqpserlyaxlxvxsgddeskrskfvfiswcgexvgpxakanvsxxkasvkqvikn
igvevhyxvaddlneeelmtkvrkssgadysgnkstn*tlhasknvxif*kkkn*kx

Frame B:
lyfklisqwpmfppqn*kllttks*liqmiptgvysntkvktkssypvkvavvlln*pkk
stnhlnvymht*elylvmmnqnvqnsfsshgvvkklvplpklmslstklqsnkssktlvl
ksitpslmismkkn**pkfvnqvvlitsgnkstn*tlhasknvyif*kkkn*kqxkkk--
-

---LYFKLISQWPMFPPXN*kllttkx*liqmxptgvysntkvktkssypvkvxvvlln*
pkkstnhlnvymxt*xlxlvmmnqnvqnsfsshgvvxklvpxpklmslxxklqsnksskt
lvlksitpslmismkkn**pkfvnqvvlitlxtnqptkrythlkmxtyfkkkkiknx

Frame C:
ciln*fhngrcflhriksclrrsls*fk*yqlvfiqirr*kqnrlir*r*rwfc*isprn
qpti*tficilksciw***iktfkirfhlmvw*rswspcqs*clcpqsfsqtshqkhwc*
splhrr**sq*rrindqss*ikwc*LLLVTNQPTKRYTHLKMYTYFKKKKIKNKXKKK--
-

---ciln*fxngrcflhxiksclrrsxs*fk*xqlvfiqirr*kqnrlir*rxrwfc*is
prnqpti*tficxlxsxiw***iktfkirfhlmvw*xswspcqs*clxpqsfsqtshqkh
wc*splxrr**sq*rrindqss*ikwc*llwxqinqlnvtri*kcxhilkkkklkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD488 (VSD488Q) /CSM/VS/VSD4-D/VSD488Q.Seq.d/                        991   0.0
VSK407 (VSK407Q) /CSM/VS/VSK4-A/VSK407Q.Seq.d/                        975   0.0
VSH509 (VSH509Q) /CSM/VS/VSH5-A/VSH509Q.Seq.d/                        975   0.0
VFE866 (VFE866Q) /CSM/VF/VFE8-C/VFE866Q.Seq.d/                        975   0.0
SSM221 (SSM221Q) /CSM/SS/SSM2-A/SSM221Q.Seq.d/                        975   0.0
SSI114 (SSI114Q) /CSM/SS/SSI1-A/SSI114Q.Seq.d/                        975   0.0
SSG248 (SSG248Q) /CSM/SS/SSG2-B/SSG248Q.Seq.d/                        975   0.0
SSF333 (SSF333Q) /CSM/SS/SSF3-B/SSF333Q.Seq.d/                        975   0.0
AHN635 (AHN635Q) /CSM/AH/AHN6-B/AHN635Q.Seq.d/                        975   0.0
AHL486 (AHL486Q) /CSM/AH/AHL4-D/AHL486Q.Seq.d/                        975   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X61797|X61797.1 Dictyostelium discoideum mRNA for p17, purified from actin-myosin  complex.   884  0.0  2
M92992|M92992.1 Dictyostelium discoideum cyclic AMP-regulated protein (p16) mRNA, complete cds.   882  0.0  2
AC119053|AC119053.2 Danio rerio clone CH211-277I7 strain Tue, WORKING DRAFT SEQUENCE, 9 ordered pieces.    38  0.058  4
CB750070|CB750070.1 AMGNNUC:SRPB2-00056-B11-A srpb2 (10220) Rattus norvegicus cDNA clone srpb2-00056-b11 5', mRNA sequence.    30  0.24  3
CC594013|CC594013.1 CH240_395P7.T7 CHORI-240 Bos taurus genomic clone CH240_395P7, genomic survey sequence.    46  0.90  1
AL954666|AL954666.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-81I19.    34  2.0  5
U40160|U40160.1 Caenorhabditis elegans cosmid C56E10.    36  2.8  2
AJ013038|AJ013038.1 Entamoeba histolytica EST EhEST330.           44  3.6  1
AC112929|AC112929.6 Mus musculus clone RP23-432A7, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    38  4.7  2
AX184730|AX184730.1 Sequence 425 from Patent WO0142467.           42     14  1
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116922_4(AC116922|pid:none) Dictyostelium discoideum chromosom...   108   3e-22
AB080297_1(AB080297|pid:none) Marsupenaeus japonicus cArp-1 mRNA...   103   1e-20
AE017342_92(AE017342|pid:none) Cryptococcus neoformans var. neof...   102   2e-20
AY122215_1(AY122215|pid:none) Drosophila melanogaster LP08941 fu...   100   7e-20
DQ443285_1(DQ443285|pid:none) Bombyx mori cyclic AMP-regulated p...    93   2e-17
BC095818_1(BC095818|pid:none) Danio rerio zgc:112450, mRNA (cDNA...    90   1e-16
BT081567_1(BT081567|pid:none) Rana catesbeiana clone rcat-evr-52...    88   5e-16
AY398329_1(AY398329|pid:none) Danio rerio clone RK068A3C03 coact...    86   2e-15
AK153389_1(AK153389|pid:none) Mus musculus bone marrow macrophag...    86   2e-15
AB038364_1(AB038364|pid:none) Rattus norvegicus mRNA for SH3P7r4...    86   2e-15
protein update 2009. 7.29
PSORT 

 psg: 0.71  gvh: 0.23  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 0.25  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VSD488 is nuc
5' end seq. ID VSD488F
5' end seq. 
>VSD488F.Seq
TTTGTATTTTAAACTAATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCT
TACGACGAAGTCTTAGCTGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGT
AAAAACAAAATCGTCTTATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAA
ATCAACCAACCATCTGAACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAA
TCAAAACGTTCAAAATTCGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCC
AAAGCTAATGTCTCTGTCCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTT
GAAGTCCATTACACCGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGT
AAATCAAGTGGTGCTGATTACTTCTGGTAACAAATCAACCAACTAAACGTTACACGCATC
TAAAAATGTATACATATTTTAAAAAAAAAAAAATTAAAAACAAANCAAAAAAAAAA----
------
Length of 5' end seq. 536
3' end seq. ID VSD488Z
3' end seq. 
>VSD488Z.Seq
----------TTTGTATTTTAAACTAATTTCNCAATGGCCGATGTTTCCTCCACANAATT
AAAAGCTGCTTACGACGAAGTNTTAGCTGATTCAAATGANACCAACTGGTGTTTATTCAA
ATACGAAGGTAAAAACAAAATCGTCTTATCCGGTAAAGGTANCGGTGGTTTTGCTGAATT
AGCCCAAGAAATCAACCAACCATCTGAACGTTTATATGCANACTTAANAGTTGNATCTGG
TGATGATGAATCAAAACGTTCAAAATTCGTTTTCATCTCATGGTGTGGTGAANAAGTTGG
TCCCCNTGCCAAAGCTAATGTCTCTGNCCNCAAAGCTTCAGTCAAACAAGTCATCAAAAA
CATTGGTGTTGAAGTCCATTACNCCGTCGCTGATGATCTCAATGAAGAAGAATTAATGAC
CAAAGTTCGTAAATCAAGTGGTGCTGATTACTCTGGNAACAAATCAACCAACTAAACGTT
ACACGCATCTAAAAATGTANACATATTTTAAAAAAAAAAAAATTAAAAACNNA
Length of 3' end seq. 523
Connected seq. ID VSD488P
Connected seq. 
>VSD488P.Seq
TTTGTATTTTAAACTAATTTCACAATGGCCGATGTTTCCTCCACAGAATTAAAAGCTGCT
TACGACGAAGTCTTAGCTGATTCAAATGATACCAACTGGTGTTTATTCAAATACGAAGGT
AAAAACAAAATCGTCTTATCCGGTAAAGGTAGCGGTGGTTTTGCTGAATTAGCCCAAGAA
ATCAACCAACCATCTGAACGTTTATATGCATACTTAAGAGTTGTATCTGGTGATGATGAA
TCAAAACGTTCAAAATTCGTTTTCATCTCATGGTGTGGTGAAGAAGTTGGTCCCCTTGCC
AAAGCTAATGTCTCTGTCCACAAAGCTTCAGTCAAACAAGTCATCAAAAACATTGGTGTT
GAAGTCCATTACACCGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAAGTTCGT
AAATCAAGTGGTGCTGATTACTTCTGGTAACAAATCAACCAACTAAACGTTACACGCATC
TAAAAATGTATACATATTTTAAAAAAAAAAAAATTAAAAACAAANCAAAAAAAAAA----
------TTTGTATTTTAAACTAATTTCNCAATGGCCGATGTTTCCTCCACANAATTAAAA
GCTGCTTACGACGAAGTNTTAGCTGATTCAAATGANACCAACTGGTGTTTATTCAAATAC
GAAGGTAAAAACAAAATCGTCTTATCCGGTAAAGGTANCGGTGGTTTTGCTGAATTAGCC
CAAGAAATCAACCAACCATCTGAACGTTTATATGCANACTTAANAGTTGNATCTGGTGAT
GATGAATCAAAACGTTCAAAATTCGTTTTCATCTCATGGTGTGGTGAANAAGTTGGTCCC
CNTGCCAAAGCTAATGTCTCTGNCCNCAAAGCTTCAGTCAAACAAGTCATCAAAAACATT
GGTGTTGAAGTCCATTACNCCGTCGCTGATGATCTCAATGAAGAAGAATTAATGACCAAA
GTTCGTAAATCAAGTGGTGCTGATTACTCTGGNAACAAATCAACCAACTAAACGTTACAC
GCATCTAAAAATGTANACATATTTTAAAAAAAAAAAAATTAAAAACNNA
Length of connected seq. 1059
Full length Seq ID -
Full length Seq. -
Length of full length seq. -