VSD474
Library VS
(Link to library)
Clone ID VSD474
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04691-1
Original site URL
Representative seq. ID VSD474P
(Link to Original site)
Representative DNA sequence
>VSD474 (VSD474Q) /CSM/VS/VSD4-D/VSD474Q.Seq.d/
ATCTGTCAAAAATTCATCATATCGCTTCTCTTAAAGGTGCTGATTCTTACAGATTGGTCA
TTAATGATGGTGTTTTAGGTCAACAATCTGTTAGATGGTTACATATTCATATCCTTGGTG
GTAGACAAATGAATTGGCCACCAGGCTAATTTCAATTTTCAAAGAAAAAAATAAAAAAAA
AAAANTAAAAAAAAAAAGGGANTTTAANGTTTTGCCANCTGAAANGANCCCAANTTAAAN
CCNTTAANAANCANAATTTTNTTTTAATAAATCAAAAAAAAAAXXXXXXXXXXTNAATTG
GCCCCCAGGCTAATTTNNATTTTNAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAA
AAGGAATANTAAGTATTGCCAACTAAATAACACAAATTAAACCATTAATAAACATAT
sequence update 2001. 3.22
Translated Amino Acid sequence
lskihhiaslkgadsyrlvindgvlgqqsvrwlhihilggrqmnwppg*fqfskkkikkk
x*KKKGXLXFCXLKXXQXKXXXXXNFXLINQKK---

---XLAPRLIXIXKKKNKKKKIKKKKEX*vlptk*hklnh**ty


Translated Amino Acid sequence (All Frames)
Frame A:
icqkfiislllkvliltdwslmmvf*vnnlldgyifislvvdk*ighqanfnfqrkk*kk
kxkkkkgx*xfax*xxpxlxplxxxixf**ikkk---

---xigpqanxxfxkkk*kkknkkkkgixsian*itqikplini

Frame B:
svknssyrfs*rc*flqigh**wcfrstic*mvtysypww*tnelatrlisifkeknkkk
kxkkkrxfxvlpxexxpx*xx*xxxfxfnkskkk---

---XLAPRLIXIXKKKNKKKKIKKKKEX*vlptk*hklnh**ty

Frame C:
lskihhiaslkgadsyrlvindgvlgqqsvrwlhihilggrqmnwppg*fqfskkkikkk
x*KKKGXLXFCXLKXXQXKXXXXXNFXLINQKK---

---nwppg*fxfxkkkikkkk*kkkrnxkycqlnntn*tinkh

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD474 (VSD474Q) /CSM/VS/VSD4-D/VSD474Q.Seq.d/ 325 3e-88
SSC321 (SSC321Q) /CSM/SS/SSC3-A/SSC321Q.Seq.d/ 319 2e-86
VSH854 (VSH854Q) /CSM/VS/VSH8-C/VSH854Q.Seq.d/ 297 7e-80
VSF252 (VSF252Q) /CSM/VS/VSF2-C/VSF252Q.Seq.d/ 297 7e-80
VSE744 (VSE744Q) /CSM/VS/VSE7-B/VSE744Q.Seq.d/ 297 7e-80
VSD845 (VSD845Q) /CSM/VS/VSD8-B/VSD845Q.Seq.d/ 297 7e-80
VSD104 (VSD104Q) /CSM/VS/VSD1-A/VSD104Q.Seq.d/ 297 7e-80
VSC401 (VSC401Q) /CSM/VS/VSC4-A/VSC401Q.Seq.d/ 297 7e-80
VSB884 (VSB884Q) /CSM/VS/VSB8-D/VSB884Q.Seq.d/ 297 7e-80
VSB635 (VSB635Q) /CSM/VS/VSB6-B/VSB635Q.Seq.d/ 297 7e-80

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB029922|AB029922.1 Dictyostelium discoideum DD-1 mRNA, complete cds. 297 6e-77 1
U61986|U61986.1 Dictyostelium discoideum PkiA (pkiA) mRNA, complete cds. 212 6e-71 2
AL954322|AL954322.4 Zebrafish DNA sequence from clone CH211-229G11. 46 0.34 1
AW589006|AW589006.1 kp17d03.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:AP47_MOUSE P35585 CLATHRIN COAT ASSEMBLY PROTEIN AP47 ;, mRNA sequence. 42 5.3 1
BQ198350|BQ198350.1 NXLV127_F04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV127_F04 5', mRNA sequence. 42 5.3 1
AL032654|AL032654.1 Caenorhabditis elegans YAC Y52B11A. 42 5.3 1
CD669029|CD669029.1 eef1c.pk003.f2 eef1c Eucalyptus tereticornis cDNA clone eef1c.pk003.f2 5' end, mRNA sequence. 42 5.3 1
BQ197303|BQ197303.1 NXLV112_C05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV112_C05 5', mRNA sequence. 42 5.3 1
BM902637|BM902637.1 NXLV_057_B11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_057_B11 5', mRNA sequence. 42 5.3 1
CD018503|CD018503.1 NXLV_032_D07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_032_D07 5', mRNA sequence. 42 5.3 1
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q23921) RecName: Full=Protein pkiA; AltName: Full=Protein DD-1;... 102 4e-21
U61986_1(U61986|pid:none) Dictyostelium discoideum PkiA (pkiA) m... 76 3e-13
(Q8SQ21) RecName: Full=Histidine triad nucleotide-binding protei... 62 5e-09
(Q9BX68) RecName: Full=Histidine triad nucleotide-binding protei... 62 5e-09
AF085236_1(AF085236|pid:none) Homo sapiens protein kinase C inhi... 62 5e-09
(Q9D0S9) RecName: Full=Histidine triad nucleotide-binding protei... 62 8e-09
BC135760_1(BC135760|pid:none) Xenopus tropicalis cDNA clone IMAG... 61 1e-08
CR847821_2(CR847821|pid:none) Zebrafish DNA sequence from clone ... 60 2e-08
AK103503_1(AK103503|pid:none) Oryza sativa Japonica Group cDNA c... 60 2e-08
BC068885_1(BC068885|pid:none) Xenopus laevis hypothetical protei... 60 2e-08
protein update 2009. 7.29
PSORT

psg: 0.88 gvh: 0.51 alm: 0.54 top: 0.40 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.41 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for VSD474 is nuc

5' end seq. ID VSD474F
5' end seq.
>VSD474F.Seq
ATCTGTCAAAAATTCATCATATCGCTTCTCTTAAAGGTGCTGATTCTTACAGATTGGTCA
TTAATGATGGTGTTTTAGGTCAACAATCTGTTAGATGGTTACATATTCATATCCTTGGTG
GTAGACAAATGAATTGGCCACCAGGCTAATTTCAATTTTCAAAGAAAAAAATAAAAAAAA
AAAANTAAAAAAAAAAAGGGANTTTAANGTTTTGCCANCTGAAANGANCCCAANTTAAAN
CCNTTAANAANCANAATTTTNTTTTAATAAATCAAAAAAAAAA----------
Length of 5' end seq. 283
3' end seq. ID VSD474Z
3' end seq.
>VSD474Z.Seq
----------TNAATTGGCCCCCAGGCTAATTTNNATTTTNAAAAAAAAAAATAAAAAAA
AAAAAATAAAAAAAAAAAAGGAATANTAAGTATTGCCAACTAAATAACACAAATTAAACC
ATTAATAAACATAT
Length of 3' end seq. 124
Connected seq. ID VSD474P
Connected seq.
>VSD474P.Seq
ATCTGTCAAAAATTCATCATATCGCTTCTCTTAAAGGTGCTGATTCTTACAGATTGGTCA
TTAATGATGGTGTTTTAGGTCAACAATCTGTTAGATGGTTACATATTCATATCCTTGGTG
GTAGACAAATGAATTGGCCACCAGGCTAATTTCAATTTTCAAAGAAAAAAATAAAAAAAA
AAAANTAAAAAAAAAAAGGGANTTTAANGTTTTGCCANCTGAAANGANCCCAANTTAAAN
CCNTTAANAANCANAATTTTNTTTTAATAAATCAAAAAAAAAA----------TNAATTG
GCCCCCAGGCTAATTTNNATTTTNAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAA
AAGGAATANTAAGTATTGCCAACTAAATAACACAAATTAAACCATTAATAAACATAT
Length of connected seq. 407
Full length Seq ID -
Full length Seq. -
Length of full length seq. -