VSD447
Library VS
(Link to library)
Clone ID VSD447
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13793-1
Original site URL
Representative seq. ID VSD447P
(Link to Original site)
Representative DNA sequence
>VSD447 (VSD447Q) /CSM/VS/VSD4-B/VSD447Q.Seq.d/
CAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTG
TCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCGTCAAAGGTA
TCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCATGGCTACCG
TCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAA
GAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTA
TGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCT
CCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAAATACACATA
AAGTTAAAACAATATAAAAAAAAAAXXXXXXXXXXCAAAAGCACAAGCCGTCGGTAGTAA
CTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGG
TGCCAAAAATTTATACGTCATTGCCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACC
ATCCGCAGGTGTTGGTGATATGGTCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAG
AAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGG
TGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAA
AGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTTAGGCCAAAGGTTGCCACC
AATGCCGGTACCA
sequence update 2001. 3.22
Translated Amino Acid sequence
qkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvlviwswlp
skrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqsprna
piygqrlppmpvplfk*IHIKLKQYKKK---

---KAQAVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVM
ATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGNILGPVAK
ECSDLGQRLPPMPVP


Translated Amino Acid sequence (All Frames)
Frame A:
qkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvlviwswlp
skrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqsprna
piygqrlppmpvplfk*IHIKLKQYKKK---

---qkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvlviws
wlpskrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqsp
rnapi*akgchqcry

Frame B:
kstsrr**lqsitrssswccheqc**fwcqkfirhcrqryqrsfk*itirrcw*yghgyr
qkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsrtsrqgml
rfmakgchqcryhclnkyt*s*nnikkk---

---kstsrr**lqsitrssswccheqc**fwcqkfirhcrqryqrsfk*itirrcw*ygh
gyrqkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsrtsrq
gmlrfrpkvatnagt

Frame C:
kaqavgsnyrvslglpvgavmnsadnsgaknlyviavkgikgrlnrlpsagvgdmvmatv
kkgkpelrkkvctglvvrqrkhwkrkdgvyiyfednagvmcnpkgevkgnilgpvakecs
dlwpkvatnagtiv*inthkvkti*kk---

---KAQAVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVM
ATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGNILGPVAK
ECSDLGQRLPPMPVP

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK191 (VSK191Q) /CSM/VS/VSK1-D/VSK191Q.Seq.d/ 862 0.0
VSJ725 (VSJ725Q) /CSM/VS/VSJ7-B/VSJ725Q.Seq.d/ 862 0.0
VSJ286 (VSJ286Q) /CSM/VS/VSJ2-D/VSJ286Q.Seq.d/ 862 0.0
VSJ211 (VSJ211Q) /CSM/VS/VSJ2-A/VSJ211Q.Seq.d/ 862 0.0
VSJ195 (VSJ195Q) /CSM/VS/VSJ1-D/VSJ195Q.Seq.d/ 862 0.0
VSJ186 (VSJ186Q) /CSM/VS/VSJ1-D/VSJ186Q.Seq.d/ 862 0.0
VSI870 (VSI870Q) /CSM/VS/VSI8-C/VSI870Q.Seq.d/ 862 0.0
VSI206 (VSI206Q) /CSM/VS/VSI2-A/VSI206Q.Seq.d/ 862 0.0
VSI106 (VSI106Q) /CSM/VS/VSI1-A/VSI106Q.Seq.d/ 862 0.0
VSH682 (VSH682Q) /CSM/VS/VSH6-D/VSH682Q.Seq.d/ 862 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG661762|BG661762.1 kx06a08.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence. 64 4e-32 5
BG301543|BG301543.1 kt02d05.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence. 66 2e-21 4
BG301842|BG301842.1 kt06b05.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence. 66 2e-21 4
BG301372|BG301372.1 kt04f05.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence. 66 6e-21 4
BG661420|BG661420.1 kx01f05.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RL23_CAEEL P48158 PROBABLE 60S RIBOSOMAL PROTEIN L23. [1] ;, mRNA sequence. 50 4e-19 4
AV536650|AV536650.1 Arabidopsis thaliana cDNA clone:pAZNII0387R, 5' end. 52 2e-16 3
Z47587|Z47587.1 A. thaliana transcribed sequence; clone FAI235; 5' end; Similar to 60S ribosomal protein L1 ; Nicotiana tabacum. 48 5e-15 3
AY081677|AY081677.1 Arabidopsis thaliana similar to 60S ribosomal protein L17 (At1g04480) mRNA, complete cds. 48 1e-14 3
CD821332|CD821332.1 BN25.041I11F011127 BN25 Brassica napus cDNA clone BN25041I11, mRNA sequence. 54 2e-14 4
AX507764|AX507764.1 Sequence 2459 from Patent WO0216655. 48 2e-14 3
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q6PC14) RecName: Full=60S ribosomal protein L23; &AY684289_1(A... 206 8e-52
AK012694_1(AK012694|pid:none) Mus musculus 10, 11 days embryo wh... 206 1e-51
BC102556_1(BC102556|pid:none) Bos taurus ribosomal protein L23, ... 205 2e-51
BT058333_1(BT058333|pid:none) Salmo salar clone Contig3997 60S r... 205 2e-51
BT073700_1(BT073700|pid:none) Oncorhynchus mykiss clone omyk-evo... 205 2e-51
EU042114_1(EU042114|pid:none) Epinephelus coioides ribosomal pro... 205 2e-51
BC003518_1(BC003518|pid:none) Homo sapiens, Similar to ribosomal... 205 2e-51
BC073541_1(BC073541|pid:none) Xenopus laevis MGC82808 protein, m... 203 5e-51
(Q5REU2) RecName: Full=60S ribosomal protein L23; &CR857424_1(C... 203 5e-51
CR382130_420(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 203 5e-51
protein update 2009. 7.29
PSORT

psg: 0.65 gvh: 0.37 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.10
nuc: 0.21 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VSD447 is nuc

5' end seq. ID VSD447F
5' end seq.
>VSD447F.Seq
CAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTG
TCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCGTCAAAGGTA
TCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCATGGCTACCG
TCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAA
GAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTA
TGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCT
CCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAAATACACATA
AAGTTAAAACAATATAAAAAAAAAA----------
Length of 5' end seq. 445
3' end seq. ID VSD447Z
3' end seq.
>VSD447Z.Seq
----------CAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCA
GTTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCC
GTCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTC
ATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTT
GTCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAAC
GCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCC
AAGGAATGCTCCGATTTAGGCCAAAGGTTGCCACCAATGCCGGTACCA
Length of 3' end seq. 398
Connected seq. ID VSD447P
Connected seq.
>VSD447P.Seq
CAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTG
TCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCGTCAAAGGTA
TCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCATGGCTACCG
TCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAA
GAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTA
TGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCT
CCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAAATACACATA
AAGTTAAAACAATATAAAAAAAAAA----------CAAAAGCACAAGCCGTCGGTAGTAA
CTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGG
TGCCAAAAATTTATACGTCATTGCCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACC
ATCCGCAGGTGTTGGTGATATGGTCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAG
AAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGG
TGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAA
AGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTTAGGCCAAAGGTTGCCACC
AATGCCGGTACCA
Length of connected seq. 843
Full length Seq ID -
Full length Seq. -
Length of full length seq. -