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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD426
Library VS
(Link to library)
Clone ID VSD426
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01866-1
Original site URL
Representative seq. ID VSD426P
(Link to Original site)
Representative DNA sequence 
>VSD426 (VSD426Q) /CSM/VS/VSD4-B/VSD426Q.Seq.d/
AAGTTATATAAATTCCTTCCTTATGGTGTTGTTGGTGCATTGGCTAGTAATTGTATAGCA
TCAGTTACTATGGGAGCATTATATGGTGTGGATGTTCCTTTAGAATGGAATCTTGGATAT
TATAAAGAAATTGGAAATCACATTGGTAGATTATGTATTGAAAATTTTATTTTCTTTTTT
GCCACTGATATTTTCTTTAAAACAAAATATTTAATTTTTAAAGAAAATGAAAACAAATAA
ATAAATAGATAAACTTGTACAAATAATAGATTATGTGTTATATATATTGGTTTATTTAAA
AAAAAAAXXXXXXXXXXAAGTTATATAAATTCCTTCCTTATGGTGTTGTTGGTGCATTGG
CTAGTAATTGTATAGCATCAGTTACTATGGGAGCATTATATGGTGTGGATGTTCCTTTAG
AATGGAATCTTGGATATTATAAAGAAATTGGAAATCNCATTGGTAGATTTATG
sequence update 2001. 3.22
Translated Amino Acid sequence 
syinsflmvllvhwlviv*hqllwehymvwmfl*ngildiikkleitlvdyvlkilfsfl
plifslkqni*flkkmktnk*IDKLVQIIDYVLYILVYLKKK---

---KLYKFLPYGVVGALASNCIASVTMGALYGVDVPLEWNLGYYKEIGNXIGRFM
Translated Amino Acid sequence (All Frames) 
Frame A:
klykflpygvvgalasnciasvtmgalygvdvplewnlgyykeignhigrlcienfifff
atdiffktkylifkenenk*inr*tctnnrlcviyiglfkkk---

---KLYKFLPYGVVGALASNCIASVTMGALYGVDVPLEWNLGYYKEIGNXIGRFM

Frame B:
syinsflmvllvhwlviv*hqllwehymvwmfl*ngildiikkleitlvdyvlkilfsfl
plifslkqni*flkkmktnk*IDKLVQIIDYVLYILVYLKKK---

---syinsflmvllvhwlviv*hqllwehymvwmfl*ngildiikkleixlvdl

Frame C:
vi*ipslwccwcig**lysisyygsiiwcgcsfrmeswil*rnwkshw*imy*kfyflfc
h*yfl*nkifnf*rk*kqink*inlyk**imcyiywfi*kk---

---vi*ipslwccwcig**lysisyygsiiwcgcsfrmeswil*rnwkshw*iy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD426 (VSD426Q) /CSM/VS/VSD4-B/VSD426Q.Seq.d/                        317   8e-86
VSI110 (VSI110Q) /CSM/VS/VSI1-A/VSI110Q.Seq.d/                        299   2e-80
SSJ344 (SSJ344Q) /CSM/SS/SSJ3-B/SSJ344Q.Seq.d/                        272   4e-72
VHM655 (VHM655Q) /CSM/VH/VHM6-C/VHM655Q.Seq.d/                         34   1.8
VHC829 (VHC829Q) /CSM/VH/VHC8-B/VHC829Q.Seq.d/                         34   1.8
VFO787 (VFO787Q) /CSM/VF/VFO7-D/VFO787Q.Seq.d/                         34   1.8
VFO578 (VFO578Q) /CSM/VF/VFO5-D/VFO578Q.Seq.d/                         34   1.8
VFN453 (VFN453Q) /CSM/VF/VFN4-C/VFN453Q.Seq.d/                         34   1.8
VFN253 (VFN253Q) /CSM/VF/VFN2-C/VFN253Q.Seq.d/                         34   1.8
VFM742 (VFM742Q) /CSM/VF/VFM7-B/VFM742Q.Seq.d/                         34   1.8
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC093167|AC093167.11 Homo sapiens Xp BAC RP11-593P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40  1.3  3
AC002538|AC002538.1 Homo sapiens chromosome 17, clone 138g16, complete sequence.    34  1.3  4
AF044973|AF044973.1 Trichomonas vaginalis pyrophosphate-dependent fructose 6-phosphate 1-phosphotransferase (Pfk1) gene, complete cds.    44  1.5  1
AW868630|AW868630.1 MR1-SN0064-190400-001-d07 SN0064 Homo sapiens cDNA, mRNA sequence.    32  2.2  2
AW868658|AW868658.1 MR1-SN0064-240400-002-e11 SN0064 Homo sapiens cDNA, mRNA sequence.    32  2.3  2
AL600450|AL600450.1 Homo sapiens mRNA; EST DKFZp313L0133_r1  (from clone DKFZp313L0133).    32  3.2  2
AC139199|AC139199.3 Mus musculus chromosome 12 clone RP24-169J2 map 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    42  6.1  1
AY090889|AY090889.1 Borrelia burgdorferi strain N40 plasmid cp32-12 probable plasmid partition protein genes, complete cds; and Bdr (bdr) gene, partial cds.    34  6.9  2
BM275789|BM275789.1 PfESToaa85f11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to TR:O97241 O97241 PFC0255C PROTEIN. ;, mRNA sequence.    38  9.6  2
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62291_1(U62291|pid:none) Rhodobacter sphaeroides copper contain...    32   5.4
protein update 2009. 3.20
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VSD426 is cyt
5' end seq. ID VSD426F
5' end seq. 
>VSD426F.Seq
AAGTTATATAAATTCCTTCCTTATGGTGTTGTTGGTGCATTGGCTAGTAATTGTATAGCA
TCAGTTACTATGGGAGCATTATATGGTGTGGATGTTCCTTTAGAATGGAATCTTGGATAT
TATAAAGAAATTGGAAATCACATTGGTAGATTATGTATTGAAAATTTTATTTTCTTTTTT
GCCACTGATATTTTCTTTAAAACAAAATATTTAATTTTTAAAGAAAATGAAAACAAATAA
ATAAATAGATAAACTTGTACAAATAATAGATTATGTGTTATATATATTGGTTTATTTAAA
AAAAAAA----------
Length of 5' end seq. 307
3' end seq. ID VSD426Z
3' end seq. 
>VSD426Z.Seq
----------AAGTTATATAAATTCCTTCCTTATGGTGTTGTTGGTGCATTGGCTAGTAA
TTGTATAGCATCAGTTACTATGGGAGCATTATATGGTGTGGATGTTCCTTTAGAATGGAA
TCTTGGATATTATAAAGAAATTGGAAATCNCATTGGTAGATTTATG
Length of 3' end seq. 156
Connected seq. ID VSD426P
Connected seq. 
>VSD426P.Seq
AAGTTATATAAATTCCTTCCTTATGGTGTTGTTGGTGCATTGGCTAGTAATTGTATAGCA
TCAGTTACTATGGGAGCATTATATGGTGTGGATGTTCCTTTAGAATGGAATCTTGGATAT
TATAAAGAAATTGGAAATCACATTGGTAGATTATGTATTGAAAATTTTATTTTCTTTTTT
GCCACTGATATTTTCTTTAAAACAAAATATTTAATTTTTAAAGAAAATGAAAACAAATAA
ATAAATAGATAAACTTGTACAAATAATAGATTATGTGTTATATATATTGGTTTATTTAAA
AAAAAAA----------AAGTTATATAAATTCCTTCCTTATGGTGTTGTTGGTGCATTGG
CTAGTAATTGTATAGCATCAGTTACTATGGGAGCATTATATGGTGTGGATGTTCCTTTAG
AATGGAATCTTGGATATTATAAAGAAATTGGAAATCNCATTGGTAGATTTATG
Length of connected seq. 463
Full length Seq ID -
Full length Seq. -
Length of full length seq. -