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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD425
Library VS
(Link to library)
Clone ID VSD425
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01788-1
Original site URL
Representative seq. ID VSD425P
(Link to Original site)
Representative DNA sequence 
>VSD425 (VSD425Q) /CSM/VS/VSD4-B/VSD425Q.Seq.d/
CAAAAATTAAAAAATACATTTATAGAAATATATAACTTTTTTTTTTATAATTAATAATTT
CAAAAATTTTAATATGTTTAGACAATTAAATAAAACAACAACAAAGAATTTTATGCTCTC
ATTGAGAGGAACTACTGTTAGATCTGTTTCAACTGGAGGATATTATAAAAGTAATGAAGA
ATTAGATAAAATAAAGAAACAAGATCTTCCTGATGAAAGAGTTAATGAAATAATCAGACA
AGCTGAAGAACAAAAGACACATGGATTAAGTTCAATTGAAACTGAAGGTGCAGCAAATAT
CCATAAGGCTCAAAAGAAAATCAAAAAGATGGTTCCAAAAGATGTTGAAAAGTTTGATTA
AAAATAATTTATTTTCAACATAATTCATATATTAGTAATATAATAACATTTCCCATCTTT
TTTTTTTAAAAATATATATTCATATATATTTATCCAATNGTAAATAATTTTTTTAAAAAA
TTNNNNAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTNNAAAAAAAAXXXXXXXXXXGTC
CGCAAAAATTTNNNAATACATTTATAGAAATATATAACTTTTTTTTTTATAATTAATAAT
TTCAAAAATTTTAATATGTTTAGACAATTAAATAAAACAACAACAAAGAATTTTATGCTC
TCATTGAGAGGAACTACTGTTAGATCTGTTTCAACTGGAGGATATTATAAAAGTAATGNA
GAATTAGATAAAATAAAGAAACAAGATCTTCCTGATGAAAGAGTTAATGAAATAATCAGA
CAAGCTGAAGAACAAAAGACACATGGATTAAGTTCAATTGAAACTGAAGGTGCAGCAAAT
ATCCATAAGGCTCAAAAGAAAATCTTAAAAGATGGTTCCAAAAGATGTTGAAAAGTTTGA
TTAAAAANA
sequence update 2001. 3.22
Translated Amino Acid sequence 
qklkntfieiynfffyn**fqkf*yv*tik*nnnkefyaliernyc*icfnwril*k**r
ir*nketrss**ks**nnqts*rtkdtwikfn*n*rcskyp*gskenqkdgskrc*kv*l
kiiyfqhnsyisniitfpifff*KYIFIYIYPXVNNFFKKXXKKKKKKKIFFXKK---

---PQKFXNTFIEIYNFFFYN**fqkf*yv*tik*nnnkefyaliernyc*icfnwril*
k*xrir*nketrss**ks**nnqts*rtkdtwikfn*n*rcskyp*gskenlkrwfqkml
kslikx
Translated Amino Acid sequence (All Frames) 
Frame A:
qklkntfieiynfffyn**fqkf*yv*tik*nnnkefyaliernyc*icfnwril*k**r
ir*nketrss**ks**nnqts*rtkdtwikfn*n*rcskyp*gskenqkdgskrc*kv*l
kiiyfqhnsyisniitfpifff*KYIFIYIYPXVNNFFKKXXKKKKKKKIFFXKK---

---vrknxxihl*kyitfffiinnfknfnmfrqlnktttknfmlslrgttvrsvstggyy
ksnxeldkikkqdlpdervneiirqaeeqkthglssietegaanihkaqkkilkdgskrc
*kv*lkx

Frame B:
kn*kihl*kyitfffiinnfknfnmfrqlnktttknfmlslrgttvrsvstggyyksnee
ldkikkqdlpdervneiirqaeeqkthglssietegaanihkaqkkikkmvpkdvekfd*
k*fifniihilvi**hfpsfffkniysyifiqx*iiflknxxkkkkkkkfffxkk---

---sakixxyiyrni*lffl*liiskilicldn*ikqqqrilcsh*eellldlfqledii
kvmxn*ik*rnkiflmkelmk*sdklknkrhmd*vqlklkvqqisirlkrks*kmvpkdv
ekfd*k

Frame C:
kikkyiyrni*lffl*liiskilicldn*ikqqqrilcsh*eellldlfqlediikvmkn
*ik*rnkiflmkelmk*sdklknkrhmd*vqlklkvqqisirlkrkskrwfqkmlkslik
nnlfst*fiy**ynnishlfflkiyihiylsnxk*ff*kixxkkkkkknffxxkk---

---PQKFXNTFIEIYNFFFYN**fqkf*yv*tik*nnnkefyaliernyc*icfnwril*
k*xrir*nketrss**ks**nnqts*rtkdtwikfn*n*rcskyp*gskenlkrwfqkml
kslikx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD425 (VSD425Q) /CSM/VS/VSD4-B/VSD425Q.Seq.d/                        650   0.0
SSI809 (SSI809Q) /CSM/SS/SSI8-A/SSI809Q.Seq.d/                        611   e-174
VSK283 (VSK283Q) /CSM/VS/VSK2-D/VSK283Q.Seq.d/                        605   e-172
SSM769 (SSM769Q) /CSM/SS/SSM7-C/SSM769Q.Seq.d/                        603   e-171
SSH462 (SSH462Q) /CSM/SS/SSH4-C/SSH462Q.Seq.d/                        517   e-146
SSB680 (SSB680Q) /CSM/SS/SSB6-D/SSB680Q.Seq.d/                        494   e-138
SSM422 (SSM422Q) /CSM/SS/SSM4-A/SSM422Q.Seq.d/                        416   e-115
SSM414 (SSM414Q) /CSM/SS/SSM4-A/SSM414Q.Seq.d/                        416   e-115
AHM717 (AHM717Q) /CSM/AH/AHM7-A/AHM717Q.Seq.d/                         46   0.001
VHA477 (VHA477Q) /CSM/VH/VHA4-D/VHA477Q.Seq.d/                         42   0.015
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  8e-07  10
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    38  2e-05  8
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                 34  2e-04  10
AC008804|AC008804.7 Homo sapiens chromosome 5 clone CTD-2085F10, complete sequence.    44  3e-04  6
AL034556|AL034556.4 Plasmodium falciparum MAL3P5.                 30  6e-04  12
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  7e-04  9
AL049180|AL049180.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P1.    38  0.001  12
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40  0.001  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          44  0.001  8
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32  0.003  13
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FP236842_1978(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9...    39   0.32
A97942(A97942) metalloproteinase (EC 3.4.21.-) A [imported] - St...    35   4.6
(Q73MX5) RecName: Full=V-type ATP synthase subunit E; AltName: F...    35   4.6
CR380956_29(CR380956|pid:none) Candida glabrata strain CBS138 ch...    34   6.0
FN357341_20(FN357341|pid:none) Schistosoma mansoni genome sequen...    34   6.0
CP000936_684(CP000936|pid:none) Streptococcus pneumoniae Hungary...    34   7.8
AM285311_54(AM285311|pid:none) Spiroplasma citri GII3-3X chromos...    34   7.9
protein update 2009. 7.29
PSORT 

 psg: 0.87  gvh: 0.10  alm: 0.55  top: 1.00  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.28  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: Golgi

>> prediction for VSD425 is nuc
5' end seq. ID VSD425F
5' end seq. 
>VSD425F.Seq
CAAAAATTAAAAAATACATTTATAGAAATATATAACTTTTTTTTTTATAATTAATAATTT
CAAAAATTTTAATATGTTTAGACAATTAAATAAAACAACAACAAAGAATTTTATGCTCTC
ATTGAGAGGAACTACTGTTAGATCTGTTTCAACTGGAGGATATTATAAAAGTAATGAAGA
ATTAGATAAAATAAAGAAACAAGATCTTCCTGATGAAAGAGTTAATGAAATAATCAGACA
AGCTGAAGAACAAAAGACACATGGATTAAGTTCAATTGAAACTGAAGGTGCAGCAAATAT
CCATAAGGCTCAAAAGAAAATCAAAAAGATGGTTCCAAAAGATGTTGAAAAGTTTGATTA
AAAATAATTTATTTTCAACATAATTCATATATTAGTAATATAATAACATTTCCCATCTTT
TTTTTTTAAAAATATATATTCATATATATTTATCCAATNGTAAATAATTTTTTTAAAAAA
TTNNNNAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTNNAAAAAAAA----------
Length of 5' end seq. 527
3' end seq. ID VSD425Z
3' end seq. 
>VSD425Z.Seq
----------GTCCGCAAAAATTTNNNAATACATTTATAGAAATATATAACTTTTTTTTT
TATAATTAATAATTTCAAAAATTTTAATATGTTTAGACAATTAAATAAAACAACAACAAA
GAATTTTATGCTCTCATTGAGAGGAACTACTGTTAGATCTGTTTCAACTGGAGGATATTA
TAAAAGTAATGNAGAATTAGATAAAATAAAGAAACAAGATCTTCCTGATGAAAGAGTTAA
TGAAATAATCAGACAAGCTGAAGAACAAAAGACACATGGATTAAGTTCAATTGAAACTGA
AGGTGCAGCAAATATCCATAAGGCTCAAAAGAAAATCTTAAAAGATGGTTCCAAAAGATG
TTGAAAAGTTTGATTAAAAANA
Length of 3' end seq. 372
Connected seq. ID VSD425P
Connected seq. 
>VSD425P.Seq
CAAAAATTAAAAAATACATTTATAGAAATATATAACTTTTTTTTTTATAATTAATAATTT
CAAAAATTTTAATATGTTTAGACAATTAAATAAAACAACAACAAAGAATTTTATGCTCTC
ATTGAGAGGAACTACTGTTAGATCTGTTTCAACTGGAGGATATTATAAAAGTAATGAAGA
ATTAGATAAAATAAAGAAACAAGATCTTCCTGATGAAAGAGTTAATGAAATAATCAGACA
AGCTGAAGAACAAAAGACACATGGATTAAGTTCAATTGAAACTGAAGGTGCAGCAAATAT
CCATAAGGCTCAAAAGAAAATCAAAAAGATGGTTCCAAAAGATGTTGAAAAGTTTGATTA
AAAATAATTTATTTTCAACATAATTCATATATTAGTAATATAATAACATTTCCCATCTTT
TTTTTTTAAAAATATATATTCATATATATTTATCCAATNGTAAATAATTTTTTTAAAAAA
TTNNNNAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTNNAAAAAAAA----------GTC
CGCAAAAATTTNNNAATACATTTATAGAAATATATAACTTTTTTTTTTATAATTAATAAT
TTCAAAAATTTTAATATGTTTAGACAATTAAATAAAACAACAACAAAGAATTTTATGCTC
TCATTGAGAGGAACTACTGTTAGATCTGTTTCAACTGGAGGATATTATAAAAGTAATGNA
GAATTAGATAAAATAAAGAAACAAGATCTTCCTGATGAAAGAGTTAATGAAATAATCAGA
CAAGCTGAAGAACAAAAGACACATGGATTAAGTTCAATTGAAACTGAAGGTGCAGCAAAT
ATCCATAAGGCTCAAAAGAAAATCTTAAAAGATGGTTCCAAAAGATGTTGAAAAGTTTGA
TTAAAAANA
Length of connected seq. 899
Full length Seq ID -
Full length Seq. -
Length of full length seq. -