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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD405
Library VS
(Link to library)
Clone ID VSD405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VSD405P
(Link to Original site)
Representative DNA sequence 
>VSD405 (VSD405Q) /CSM/VS/VSD4-A/VSD405Q.Seq.d/
CGCGTCCGGNAACAAAGNAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCT
TCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCA
TTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGC
CGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGA
TCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATA
AATCAGGACCAATATACACTGGTTTTAAAAAATAAAAAAAAAAXXXXXXXXXXGAACAAA
GAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGT
TAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGC
CGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGG
TGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCT
CAGAGAGTTAAATAACTAAACCATTTATATATTAAATAAAATAAATCAGGNACCAATATA
CACGGGTTTTAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
rvrxqxkvgvvgkygtrygaslrkqvkkmeitqhgtytcsfcgkdavrrssvgiwkcngc
rkvlaggawtmstaagatvrstirrlrelnn*tiyi*NKINQDQYTLVLKNKKK---

---TKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCR
KVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyilnkinqxpiytgfkk
Translated Amino Acid sequence (All Frames) 
Frame A:
rvrxqxkvgvvgkygtrygaslrkqvkkmeitqhgtytcsfcgkdavrrssvgiwkcngc
rkvlaggawtmstaagatvrstirrlrelnn*tiyi*NKINQDQYTLVLKNKKK---

---eqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtva
vkf*lvvlglcqlplvplldqlsdvses*itkpfiy*ik*irxqytrvlk

Frame B:
asgnkxkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsgnvtva
vkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*kikkk---

---nkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwylem*rlp
*sfswwcldyvncrwchc*inyqtsqrvk*lnhlyik*nksgtnihgf*k

Frame C:
rpxtkxsrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwylem*rlp
*sfswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*kk---

---TKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCR
KVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyilnkinqxpiytgfkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD405 (VSD405Q) /CSM/VS/VSD4-A/VSD405Q.Seq.d/                        634   0.0
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        617   e-176
VSK445 (VSK445Q) /CSM/VS/VSK4-B/VSK445Q.Seq.d/                        611   e-174
VSK444 (VSK444Q) /CSM/VS/VSK4-B/VSK444Q.Seq.d/                        611   e-174
VSK116 (VSK116Q) /CSM/VS/VSK1-A/VSK116Q.Seq.d/                        611   e-174
VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        611   e-174
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        611   e-174
VSI243 (VSI243Q) /CSM/VS/VSI2-B/VSI243Q.Seq.d/                        611   e-174
VSH738 (VSH738Q) /CSM/VS/VSH7-B/VSH738Q.Seq.d/                        611   e-174
VSH330 (VSH330Q) /CSM/VS/VSH3-B/VSH330Q.Seq.d/                        611   e-174
own update 2001. 3.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    82  6e-14  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    82  6e-14  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    82  6e-14  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    82  6e-14  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    82  6e-14  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    82  6e-14  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    80  4e-13  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  8e-13  2
BU275473|BU275473.1 Cr_Emb_02A04_TEXF1 Convoluta roscoffensis embryos from Eva Jiminez Convoluta roscoffensis cDNA clone Cr_Emb_02A04 5' similar to E1266102 SEQUENCE 47 FROM PATENT WO9723633. unidentified, mRNA sequence.    68  1e-10  2
BI742435|BI742435.1 kt50h12.y4 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;contains element MER8 repetitive element ;, mRNA sequence.    42  2e-10  4
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   159   6e-38
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   122   1e-26
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   120   3e-26
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   120   4e-26
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   120   5e-26
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   118   1e-25
EU139237_1(EU139237|pid:none) Flustra foliacea putative 60S ribo...   118   1e-25
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   118   1e-25
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   117   2e-25
AM049131_1(AM049131|pid:none) Cicindela littoralis mRNA for ribo...   117   2e-25
protein update 2009. 7.29
PSORT 

 psg: 0.66  gvh: 0.27  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSD405 is nuc
5' end seq. ID VSD405F
5' end seq. 
>VSD405F.Seq
CGCGTCCGGNAACAAAGNAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCT
TCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCA
TTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGC
CGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGA
TCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATA
AATCAGGACCAATATACACTGGTTTTAAAAAATAAAAAAAAAA----------
Length of 5' end seq. 343
3' end seq. ID VSD405Z
3' end seq. 
>VSD405Z.Seq
----------GAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCT
TCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCA
TTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGC
CGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGA
TCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATTAAATAAAATA
AATCAGGNACCAATATACACGGGTTTTAAAAAA
Length of 3' end seq. 323
Connected seq. ID VSD405P
Connected seq. 
>VSD405P.Seq
CGCGTCCGGNAACAAAGNAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCT
TCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCA
TTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGC
CGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGA
TCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATGAAATAAAATA
AATCAGGACCAATATACACTGGTTTTAAAAAATAAAAAAAAAA----------GAACAAA
GAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGT
TAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGC
CGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGG
TGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCT
CAGAGAGTTAAATAACTAAACCATTTATATATTAAATAAAATAAATCAGGNACCAATATA
CACGGGTTTTAAAAAA
Length of connected seq. 666
Full length Seq ID -
Full length Seq. -
Length of full length seq. -