VSD403
Library VS
(Link to library)
Clone ID VSD403
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD403F
(Link to Original site)
Representative DNA sequence
>VSD403 (VSD403Q) /CSM/VS/VSD4-A/VSD403Q.Seq.d/
CGGNACGCGTGGGCGGACGXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
RXAWAD---


Translated Amino Acid sequence (All Frames)
Frame A:
RXAWAD---


Frame B:
gtrgr---


Frame C:
xrvgg---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF753 (VSF753Q) /CSM/VS/VSF7-C/VSF753Q.Seq.d/ 32 0.22
VSD771 (VSD771Q) /CSM/VS/VSD7-C/VSD771Q.Seq.d/ 32 0.22
VSD403 (VSD403Q) /CSM/VS/VSD4-A/VSD403Q.Seq.d/ 32 0.22
VSI174 (VSI174Q) /CSM/VS/VSI1-D/VSI174Q.Seq.d/ 30 0.88
VSH241 (VSH241Q) /CSM/VS/VSH2-B/VSH241Q.Seq.d/ 30 0.88
VSF284 (VSF284Q) /CSM/VS/VSF2-D/VSF284Q.Seq.d/ 30 0.88
VSA855 (VSA855Q) /CSM/VS/VSA8-C/VSA855Q.Seq.d/ 30 0.88
VSA317 (VSA317Q) /CSM/VS/VSA3-A/VSA317Q.Seq.d/ 30 0.88
SSE292 (SSE292Q) /CSM/SS/SSE2-D/SSE292Q.Seq.d/ 30 0.88
SSC234 (SSC234Q) /CSM/SS/SSC2-B/SSC234Q.Seq.d/ 30 0.88

own update 2004.12.25
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 89223
Number of Sequences: 25380197
Number of extensions: 89223
Number of successful extensions: 89223
Number of sequences better than 10.0: 0
length of query: 29
length of database: P,805,629,642
effective HSP length: 19
effective length of query: 10
effective length of database: P,323,405,899
effective search space: 323234058990
effective search space used: 323234058990
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 8.21
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 32,894,198
protein update 2009. 7.29
PSORT -
5' end seq. ID VSD403F
5' end seq.
>VSD403F.Seq
CGGNACGCGTGGGCGGACG----------
Length of 5' end seq. 19
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -