NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD385
Library VS
(Link to library)
Clone ID VSD385
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD385E
(Link to Original site)
Representative DNA sequence 
>VSD385 (VSD385Q) /CSM/VS/VSD3-D/VSD385Q.Seq.d/
CAAATATAAAACAAAAATGAATAAATTCATTATTGGTTTCTTTTTATGTTTAACTGTTTT
TTTAACCTTTGTAAATAGTTCAGAAATTGATCATCAATACTCACTCACAAGTAGTATTAA
TGGAAGTAGCAGTGGTGTAAGTAATTCAACAGATAACACTGGTTGTGGTGAATACACTTC
ATGTGGTGATTGTAGAGAAGATAAAGGATGTGTTTGGTGTGGATCAGAAGGTATTTGCAC
TGAAGGTACATTCTATGGTACTAAACCATTAAATATCAATGGTGCCTGTAAAGATTTCAT
GTGGATGCAATGTAAAATTCAAGGTCGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTT
CTTAATTATTGTCTTCTTCTTTATTTGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGA
TAAACACTATCATAACATTCAAGATGATGAAACTGAACGTTTGGTTTCTCGTACTCCAAT
CACTGATAGACGTAGAGATGAAATGAGAGCTAAATGGGGTATTGGTGCTAAAAATAACAA
CAACAGCTCAAGTTACCAAAGTGATTCATGGAGATAATCTAGTAAAATATAATTCCAAAT
TTATAATAATAAATAATATAATATAATATAATAATAATA
sequence update 2001. 3.25
Translated Amino Acid sequence 
KYKTKMNKFIIGFFLCLTVFLTFVNSSEIDHQYSLTSSINGSSSGVSNSTDNTGCGEYTS
CGDCREDKGCVWCGSEGICTEGTFYGTKPLNINGACKDFMWMQCKIQGRWAILIAAGGAF
LIIVFFFICLCCCCCRRKKDKHYHNIQDDETERLVSRTPITDRRRDEMRAKWGIGAKNNN
NSSSYQSDSWR*sski*fqiynnk*ynii***
Translated Amino Acid sequence (All Frames) 
Frame A:
qi*nkne*ihywflfmfncffnlck*frn*ssilthk*y*wk*qwck*fnr*hwlw*ihf
mw*l*rr*rmclvwirrylh*ryilwy*tikyqwcl*rfhvdam*nsrslgnfnccwwcl
lnyclllylplllll*kker*tls*hsr**n*tfgfsysnh**t*r*nes*mgywc*k*q
qqlklpk*fmeii**niipnl***ii*yniiii


Frame B:
KYKTKMNKFIIGFFLCLTVFLTFVNSSEIDHQYSLTSSINGSSSGVSNSTDNTGCGEYTS
CGDCREDKGCVWCGSEGICTEGTFYGTKPLNINGACKDFMWMQCKIQGRWAILIAAGGAF
LIIVFFFICLCCCCCRRKKDKHYHNIQDDETERLVSRTPITDRRRDEMRAKWGIGAKNNN
NSSSYQSDSWR*sski*fqiynnk*ynii***


Frame C:
nikqk*insllvsfyv*lff*pl*ivqkliinthsqvvlmevavv*viqqitlvvvntlh
vvivekikdvfgvdqkvfalkvhsmvlnh*ismvpvkiscgcnvkfkvvgqf*lllvvps
*llssslfafvvvvveerkintiitfkmmklnvwflvlqslidvemk*elngvlvlkitt
taqvtkvihgdnlvkynskfiiinnii*ynnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF727 (VSF727Q) /CSM/VS/VSF7-B/VSF727Q.Seq.d/                       1112   0.0
VSD385 (VSD385Q) /CSM/VS/VSD3-D/VSD385Q.Seq.d/                       1112   0.0
SSL667 (SSL667Q) /CSM/SS/SSL6-C/SSL667Q.Seq.d/                       1112   0.0
SSK837 (SSK837Q) /CSM/SS/SSK8-B/SSK837Q.Seq.d/                       1112   0.0
SLB315 (SLB315Q) /CSM/SL/SLB3-A/SLB315Q.Seq.d/                       1112   0.0
VSF765 (VSF765Q) /CSM/VS/VSF7-C/VSF765Q.Seq.d/                       1098   0.0
VSD765 (VSD765Q) /CSM/VS/VSD7-C/VSD765Q.Seq.d/                       1084   0.0
SSJ375 (SSJ375Q) /CSM/SS/SSJ3-D/SSJ375Q.Seq.d/                       1084   0.0
VSI540 (VSI540Q) /CSM/VS/VSI5-B/VSI540Q.Seq.d/                       1074   0.0
SSE803 (SSE803Q) /CSM/SS/SSE8-A/SSE803Q.Seq.d/                       1061   0.0
own update 2001. 3.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC129283|AC129283.3 Rattus norvegicus clone CH230-6I17, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  2e-04  4
AC126589|AC126589.4 Rattus norvegicus clone CH230-121A13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    54  0.002  1
AP002401|AP002401.1 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-729L2, WORKING DRAFT SEQUENCE, 31 unordered pieces.    36  0.007  5
AC131079|AC131079.5 Mus musculus clone RP23-434L17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  0.009  3
AC127907|AC127907.3 Rattus norvegicus clone CH230-217J16, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.037  2
AC120856|AC120856.3 Mus musculus clone RP23-284B21, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  0.041  4
AC126956|AC126956.5 Rattus norvegicus clone CH230-78A8, WORKING DRAFT SEQUENCE, 1 ordered piece.    54  0.041  2
AC017465|AC017465.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    42  0.071  2
BX572073|BX572073.3 Mouse DNA sequence from clone RP23-355J14 on chromosome X.    38  0.074  5
AP000620|AP000620.4 Homo sapiens genomic DNA, chromosome 11q clone:CMB9-36F4, complete sequences.    50  0.075  2
dna update 2003. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954216_234(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    42   0.020
AX588489_1(AX588489|pid:none) Sequence 364 from Patent WO02083898.     38   0.28
T21694(T21694)hypothetical protein F33C8.1 - Caenorhabditis eleg...    37   0.49
(Q19981) RecName: Full=Putative protein tag-53; Flags: Precursor...    37   0.49
Z69790_3(Z69790|pid:none) Caenorhabditis elegans Cosmid F33C8, c...    37   0.49
AE014134_1453(AE014134|pid:none) Drosophila melanogaster chromos...    37   0.63
AL954359_1(AL954359|pid:none) Zebrafish DNA sequence from clone ...    36   0.83
BC051121_1(BC051121|pid:none) Mus musculus multiple EGF-like-dom...    36   1.1
CR388098_1(CR388098|pid:none) Zebrafish DNA sequence from clone ...    35   1.4
GQ222417_1(GQ222417|pid:none) Bos taurus breed Galloway attracti...    35   2.4
protein update 2009. 7.29
PSORT 

 psg: 0.99  gvh: 0.81  alm: 0.11  top: 0.10  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: nuclear

>> prediction for VSD385 is exc
5' end seq. ID VSD385F
5' end seq. 
>VSD385F.Seq
CAAATATAAAACAAAAATGAATAAATTCATTATTGGTTTCTTTTTATGTTTAACTGTTTT
TTTAACCTTTGTAAATAGTTCAGAAATTGATCATCAATACTCACTCACAAGTAGTATTAA
TGGAAGTAGCAGTGGTGTAAGTAATTCAACAGATAACACTGGTTGTGGTGAATACACTTC
ATGTGGTGATTGTAGAGAAGATAAAGGATGTGTTTGGTGTGGATCAGAAGGTATTTGCAC
TGAAGGTACATTCTATGGTACTAAACCATTAAATATCAATGGTGCCTGTAAAGATTTCAT
GTGGATGCAATGTAAAATTCAAGGTCGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTT
CTTAATTATTGTCTTCTTCTTTATTTGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGA
TAAACACTATCATAACATTCAAGATGATGAAACTGAACGTTTGGTTTCTCGTACTCCAAT
CACTGATAGACGTAGAGATGAAATGAGAGCTAAATGGGGTATT----------
Length of 5' end seq. 523
3' end seq. ID VSD385Z
3' end seq. 
>VSD385Z.Seq
----------CAAATATAAAACAAAAATGAATAAATTCATTATTGGTTTCTTTTTATGTT
TAACTGTTTTTTTAACCTTTGTAAATAGTTCAGAAATTGATCATCAATACTCACTCACAA
GTAGTATTAATGGAAGTAGCAGTGGTGTAAGTAATTCAACAGATAACACTGGTTGTGGTG
AATACACTTCATGTGGTGATTGTAGAGAAGATAAAGGATGTGTTTGGTGTGGATCAGAAG
GTATTTGCACTGAAGGTACATTCTATGGTACTAAACCATTAAATATCAATGGTGCCTGTA
AAGATTTCATGTGGATGCAATGTAAAATTCAAGGTCGTTGGGCAATTTTAATTGCTGCTG
GTGGTGCCTTCTTAATTATTGTCTTCTTCTTTATTTGCCTTTGTTGTTGTTGTTGTAGAA
GAAAGAAAGATAAACACTATCATAACATTCAAGATGATGAAACTGAACGTTTGGTTTCTC
GTACTCCAATCACTGATAGACGTAGAGATGAAATGAGAGCTAAATGGGGTATTGGTGCTA
AAAATAACAACAACAGCTCAAGTTACCAAAGTGATTCATGGAGATAATCTAGTAAAATAT
AATTCCAAATTTATAATAATAAATAATATAATATAATATAATAATAATA
Length of 3' end seq. 639
Connected seq. ID VSD385P
Connected seq. 
>VSD385P.Seq
CAAATATAAAACAAAAATGAATAAATTCATTATTGGTTTCTTTTTATGTTTAACTGTTTT
TTTAACCTTTGTAAATAGTTCAGAAATTGATCATCAATACTCACTCACAAGTAGTATTAA
TGGAAGTAGCAGTGGTGTAAGTAATTCAACAGATAACACTGGTTGTGGTGAATACACTTC
ATGTGGTGATTGTAGAGAAGATAAAGGATGTGTTTGGTGTGGATCAGAAGGTATTTGCAC
TGAAGGTACATTCTATGGTACTAAACCATTAAATATCAATGGTGCCTGTAAAGATTTCAT
GTGGATGCAATGTAAAATTCAAGGTCGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTT
CTTAATTATTGTCTTCTTCTTTATTTGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGA
TAAACACTATCATAACATTCAAGATGATGAAACTGAACGTTTGGTTTCTCGTACTCCAAT
CACTGATAGACGTAGAGATGAAATGAGAGCTAAATGGGGTATT----------CAAATAT
AAAACAAAAATGAATAAATTCATTATTGGTTTCTTTTTATGTTTAACTGTTTTTTTAACC
TTTGTAAATAGTTCAGAAATTGATCATCAATACTCACTCACAAGTAGTATTAATGGAAGT
AGCAGTGGTGTAAGTAATTCAACAGATAACACTGGTTGTGGTGAATACACTTCATGTGGT
GATTGTAGAGAAGATAAAGGATGTGTTTGGTGTGGATCAGAAGGTATTTGCACTGAAGGT
ACATTCTATGGTACTAAACCATTAAATATCAATGGTGCCTGTAAAGATTTCATGTGGATG
CAATGTAAAATTCAAGGTCGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTTCTTAATT
ATTGTCTTCTTCTTTATTTGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGATAAACAC
TATCATAACATTCAAGATGATGAAACTGAACGTTTGGTTTCTCGTACTCCAATCACTGAT
AGACGTAGAGATGAAATGAGAGCTAAATGGGGTATTGGTGCTAAAAATAACAACAACAGC
TCAAGTTACCAAAGTGATTCATGGAGATAATCTAGTAAAATATAATTCCAAATTTATAAT
AATAAATAATATAATATAATATAATAATAATA
Length of connected seq. 1162
Full length Seq ID VSD385E
Full length Seq. 
>VSD385E.Seq
CAAATATAAAACAAAAATGAATAAATTCATTATTGGTTTCTTTTTATGTTTAACTGTTTT
TTTAACCTTTGTAAATAGTTCAGAAATTGATCATCAATACTCACTCACAAGTAGTATTAA
TGGAAGTAGCAGTGGTGTAAGTAATTCAACAGATAACACTGGTTGTGGTGAATACACTTC
ATGTGGTGATTGTAGAGAAGATAAAGGATGTGTTTGGTGTGGATCAGAAGGTATTTGCAC
TGAAGGTACATTCTATGGTACTAAACCATTAAATATCAATGGTGCCTGTAAAGATTTCAT
GTGGATGCAATGTAAAATTCAAGGTCGTTGGGCAATTTTAATTGCTGCTGGTGGTGCCTT
CTTAATTATTGTCTTCTTCTTTATTTGCCTTTGTTGTTGTTGTTGTAGAAGAAAGAAAGA
TAAACACTATCATAACATTCAAGATGATGAAACTGAACGTTTGGTTTCTCGTACTCCAAT
CACTGATAGACGTAGAGATGAAATGAGAGCTAAATGGGGTATTGGTGCTAAAAATAACAA
CAACAGCTCAAGTTACCAAAGTGATTCATGGAGATAATCTAGTAAAATATAATTCCAAAT
TTATAATAATAAATAATATAATATAATATAATAATAATA
Length of full length seq. 639