VSD384
Library VS
(Link to library)
Clone ID VSD384
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14495-1
Original site URL
Representative seq. ID VSD384P
(Link to Original site)
Representative DNA sequence
>VSD384 (VSD384Q) /CSM/VS/VSD3-D/VSD384Q.Seq.d/
CCAAACAAAGGTCTTAAANATCACCACCCGNNAAAGNCCATGTGGGGAAGGTACAAACAC
CTGGGATCXXXXXXXXXXCAAAATCAGTATCACNTTAACCTCAAGNAACCCGGAAATCTC
TTGAAAAAGTTTGNGCTGACATCATCACTCTTGCTAAAAACAAGAAAGTCAAGGCTAAGG
GTNCAANCCGTATCCCAAACAAAGTCTTNAANATCACCACCCGTAAAAGTCCATGTGGTN
NAGGTNCAAACACCTGGGNTCGNTTCGAAATGAGAATCCACAAACGTGTCANCCACATCT
NATCCACCCAAGATTTCGTCAAGGAAATGAACACCATCTCAATCGAAGCNGGCGTTGATG
TTNAAGTCATCAGGATAAAAAAGAAGCCAANAACTAAATTAA
sequence update 2001. 3.22
Translated Amino Acid sequence
PNKGLKXHHPXKXMWGRYKHLG---

---QNQYHXNLKXPGNLLKKFXLTSSLLLKTRKSRLRVQXVSQTKSXXSPPVKVHVVXVQ
TPGXXSK*estnvsxtsxppkissrk*tpsqskxalmxkssg*krsqxln*


Translated Amino Acid sequence (All Frames)
Frame A:
PNKGLKXHHPXKXMWGRYKHLG---

---QNQYHXNLKXPGNLLKKFXLTSSLLLKTRKSRLRVQXVSQTKSXXSPPVKVHVVXVQ
TPGXXSK*estnvsxtsxppkissrk*tpsqskxalmxkssg*krsqxln*

Frame B:
qtkvlxittrxxpcgegtntwd---

---kisitltsxnpeis*kslx*hhhsc*kqesqg*gxxpypkqslxxhhp*ksmwxrxk
hlgsxrnenpqtcxphlihprfrqgnehhlnrsxr*cxshqdkkeaxn*i

Frame C:
kqrs*xsppxkxhvgkvqtpgi---

---ksvsx*pqxtrkslekvxadiitlaknkkvkakgxxripnkvxxittrkspcgxgxn
twxrfemrihkrvxhixstqdfvkemntisieagvdvxvirikkkpxtkl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD384 (VSD384Q) /CSM/VS/VSD3-D/VSD384Q.Seq.d/ 613 e-175
VSJ856 (VSJ856Q) /CSM/VS/VSJ8-C/VSJ856Q.Seq.d/ 509 e-144
VSJ165 (VSJ165Q) /CSM/VS/VSJ1-C/VSJ165Q.Seq.d/ 509 e-144
VSD308 (VSD308Q) /CSM/VS/VSD3-A/VSD308Q.Seq.d/ 509 e-144
SHA481 (SHA481Q) /CSM/SH/SHA4-D/SHA481Q.Seq.d/ 509 e-144
VSJ653 (VSJ653Q) /CSM/VS/VSJ6-C/VSJ653Q.Seq.d/ 496 e-139
VSJ493 (VSJ493Q) /CSM/VS/VSJ4-D/VSJ493Q.Seq.d/ 496 e-139
VSG353 (VSG353Q) /CSM/VS/VSG3-C/VSG353Q.Seq.d/ 496 e-139
VSE290 (VSE290Q) /CSM/VS/VSE2-D/VSE290Q.Seq.d/ 496 e-139
VSC595 (VSC595Q) /CSM/VS/VSC5-D/VSC595Q.Seq.d/ 496 e-139

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BP117144|BP117144.1 Bombyx mori cDNA, clone:brS-1313. 64 1e-06 1
AV399798|AV399798.1 Bombyx mori cDNA clone:NV120797. 64 1e-06 1
AL116620|AL116620.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 58 9e-05 1
AL115591|AL115591.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 58 9e-05 1
AL114779|AL114779.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 58 9e-05 1
AL112608|AL112608.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 58 9e-05 1
AL111708|AL111708.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 58 9e-05 1
AL115017|AL115017.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 58 9e-05 1
AL111409|AL111409.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 58 9e-05 1
AL116156|AL116156.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation. 58 9e-05 1
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54Y41) RecName: Full=40S ribosomal protein S20; 129 1e-29
AK062522_1(AK062522|pid:none) Oryza sativa Japonica Group cDNA c... 91 1e-17
AM427997_1(AM427997|pid:none) Vitis vinifera contig VV78X043700.... 90 2e-17
EF145241_1(EF145241|pid:none) Populus trichocarpa clone WS01122_... 90 3e-17
AY758353_1(AY758353|pid:none) Zea mays ribosomal protein S10p/S2... 90 3e-17
AC157891_25(AC157891|pid:none) Medicago truncatula chromosome 7 ... 89 5e-17
EU952622_1(EU952622|pid:none) Zea mays clone 1284507 40S ribosom... 89 5e-17
CP000583_102(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 87 1e-16
(Q9STY6) RecName: Full=40S ribosomal protein S20-2; &AK227448_1... 87 1e-16
AB019235_13(AB019235|pid:none) Arabidopsis thaliana genomic DNA,... 87 1e-16
protein update 2009. 7.29
PSORT

psg: 0.63 gvh: 0.45 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.59 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: mitochondrial
8.0 %: cytoplasmic
8.0 %: nuclear

>> prediction for VSD384 is mit

5' end seq. ID VSD384F
5' end seq.
>VSD384F.Seq
CCAAACAAAGGTCTTAAANATCACCACCCGNNAAAGNCCATGTGGGGAAGGTACAAACAC
CTGGGATC----------
Length of 5' end seq. 68
3' end seq. ID VSD384Z
3' end seq.
>VSD384Z.Seq
----------CAAAATCAGTATCACNTTAACCTCAAGNAACCCGGAAATCTCTTGAAAAA
GTTTGNGCTGACATCATCACTCTTGCTAAAAACAAGAAAGTCAAGGCTAAGGGTNCAANC
CGTATCCCAAACAAAGTCTTNAANATCACCACCCGTAAAAGTCCATGTGGTNNAGGTNCA
AACACCTGGGNTCGNTTCGAAATGAGAATCCACAAACGTGTCANCCACATCTNATCCACC
CAAGATTTCGTCAAGGAAATGAACACCATCTCAATCGAAGCNGGCGTTGATGTTNAAGTC
ATCAGGATAAAAAAGAAGCCAANAACTAAATTAA
Length of 3' end seq. 324
Connected seq. ID VSD384P
Connected seq.
>VSD384P.Seq
CCAAACAAAGGTCTTAAANATCACCACCCGNNAAAGNCCATGTGGGGAAGGTACAAACAC
CTGGGATC----------CAAAATCAGTATCACNTTAACCTCAAGNAACCCGGAAATCTC
TTGAAAAAGTTTGNGCTGACATCATCACTCTTGCTAAAAACAAGAAAGTCAAGGCTAAGG
GTNCAANCCGTATCCCAAACAAAGTCTTNAANATCACCACCCGTAAAAGTCCATGTGGTN
NAGGTNCAAACACCTGGGNTCGNTTCGAAATGAGAATCCACAAACGTGTCANCCACATCT
NATCCACCCAAGATTTCGTCAAGGAAATGAACACCATCTCAATCGAAGCNGGCGTTGATG
TTNAAGTCATCAGGATAAAAAAGAAGCCAANAACTAAATTAA
Length of connected seq. 392
Full length Seq ID -
Full length Seq. -
Length of full length seq. -