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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD352
Library VS
(Link to library)
Clone ID VSD352
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15567-1
Original site URL
Representative seq. ID VSD352P
(Link to Original site)
Representative DNA sequence 
>VSD352 (VSD352Q) /CSM/VS/VSD3-C/VSD352Q.Seq.d/
CAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATCTATTTCATGCCA
CATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATCTCAATGGAACTCAAATATCCA
ATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATT
AAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATACTGTTACA
ATTGGTGGTTTTGCTGTCAATGGTAATCATTTAGTTGTCGTAACCACTTTAGATAATTTA
TTAAAAGGTGCTGCAACTCAAGCACTTCAAAATATGAATATTTGTTTAGGTTTAGATGAA
TTAGCAAGTATTAAAAATGAATTATAAAAATATTTTTATAATCTAAAAAAAAANGAAAAT
AAAAAAAAAAXXXXXXXXXXCAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTA
GTCCAATCTATTTCATGCCACATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATCT
CAATGGAACTCAAATATCCAATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCT
ATCAAAATGAACCGTTAATTAAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATA
GTGGTAAACATACTGTTACAATTGGTGGTTTTGCTGTCAATGGTAATCATTTAGTTGTCG
TAACCACTTTAGATAATTTATTAAAAGGTGCTGCAACTCAAGCACTTCAAAATATGAATA
TTTGTTTAGGTTTAGATGAATTAGCAAGTATTAAAAATAATTATAAAAATATTTTTATAA
TCTAAAAAAAAAAGAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
qhthelevshqlgspiyfmphvgqffqgitltismelkypmtkeqvveryqkfyqnepli
kidkdgipevksnsgkhtvtiggfavngnhlvvvttldnllkgaatqalqnmniclglde
lasiknel*KYFYNLKKXENKKK---

---QHTHELEVSHQLGSPIYFMPHVGQFFQGITLTISMELKYPMTKEQVVERYQKFYQNE
PLIKIDKDGIPEVKSNSGKHTVTIGGFAVNGNHLVVVTTLDNLLKGAATQALQNMNICLG
LDELASIKNNYKNIFII*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qhthelevshqlgspiyfmphvgqffqgitltismelkypmtkeqvveryqkfyqnepli
kidkdgipevksnsgkhtvtiggfavngnhlvvvttldnllkgaatqalqnmniclglde
lasiknel*KYFYNLKKXENKKK---

---QHTHELEVSHQLGSPIYFMPHVGQFFQGITLTISMELKYPMTKEQVVERYQKFYQNE
PLIKIDKDGIPEVKSNSGKHTVTIGGFAVNGNHLVVVTTLDNLLKGAATQALQNMNICLG
LDELASIKNNYKNIFII*kkk

Frame B:
nilmnlrlvinwvvqsischmlvnsfkvlplqsqwnsniq*pknkwsnviknsikmnr*l
ksikmvfqrlnqivvnillqlvvllsmvii*ls*pl*iiy*kvlqlkhfki*ifv*v*mn
*qvlkmnyknifii*kkxkikkk---

---nilmnlrlvinwvvqsischmlvnsfkvlplqsqwnsniq*pknkwsnviknsikmn
r*lksikmvfqrlnqivvnillqlvvllsmvii*ls*pl*iiy*kvlqlkhfki*ifv*v
*mn*qvlkiiikifl*skkkr

Frame C:
tys*t*g*ssig*snlfhatcwsilsryypynlngtqisndqrtsgrtlskilsk*tvn*
nr*rwysrg*ik*w*tycynwwfccqw*sfscrnhfr*fikrccnsstskyeylfrfr*i
sky*k*iikifl*skkkxk*kk---

---tys*t*g*ssig*snlfhatcwsilsryypynlngtqisndqrtsgrtlskilsk*t
vn*nr*rwysrg*ik*w*tycynwwfccqw*sfscrnhfr*fikrccnsstskyeylfrf
r*isky*k*l*kyfynlkkke
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD352 (VSD352Q) /CSM/VS/VSD3-C/VSD352Q.Seq.d/                        801   0.0
VSB352 (VSB352Q) /CSM/VS/VSB3-C/VSB352Q.Seq.d/                        801   0.0
SLE448 (SLE448Q) /CSM/SL/SLE4-B/SLE448Q.Seq.d/                        801   0.0
VSB196 (VSB196Q) /CSM/VS/VSB1-D/VSB196Q.Seq.d/                        793   0.0
SSH168 (SSH168Q) /CSM/SS/SSH1-C/SSH168Q.Seq.d/                        785   0.0
VHJ741 (VHJ741Q) /CSM/VH/VHJ7-B/VHJ741Q.Seq.d/                        759   0.0
AHG623 (AHG623Q) /CSM/AH/AHG6-A/AHG623Q.Seq.d/                        759   0.0
AHE809 (AHE809Q) /CSM/AH/AHE8-A/AHE809Q.Seq.d/                        759   0.0
AFD467 (AFD467Q) /CSM/AF/AFD4-C/AFD467Q.Seq.d/                        757   0.0
AHL333 (AHL333Q) /CSM/AH/AHL3-B/AHL333Q.Seq.d/                        726   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.    38  6e-04  10
AG160056|AG160056.1 Pan troglodytes DNA, clone: RP43-025M08.TJ.    56  7e-04  1
AP001118|AP001118.1 Buchnera sp. APS genomic DNA, complete sequence, segment 1/2.    38  8e-04  11
AF257462|AF257462.1 Dimastigella mimosa kinetoplast minicircle sequence.    40  0.002  2
K00915|K00915.1 paramecium species 1,168 mt dna dimer: replication init. region.    30  0.003  4
AX348558|AX348558.1 Sequence 16 from Patent WO0202807.            44  0.004  3
AX344167|AX344167.1 Sequence 14 from Patent WO0200926.            44  0.004  3
AX251753|AX251753.1 Sequence 14 from Patent WO0168911.            44  0.004  3
AW916974|AW916974.1 EST348278 Rat gene index, normalized rat, norvegicus, Bento Soares Rattus norvegicus cDNA clone RGIDX40 5' end, mRNA sequence.    34  0.011  4
AY217738|AY217738.1 Eimeria tenella chloroplast, complete genome.    48  0.018  5
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(B2FMD7) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   130   6e-29
(B0RS54) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   130   7e-29
AE013598_2615(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...   129   1e-28
CP000967_1954(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...   129   1e-28
(Q2P2F6) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   129   1e-28
(Q3BSI7) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   129   1e-28
(B4SQ93) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   128   3e-28
(Q4UVI5) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta...   126   1e-27
CP000941_285(CP000941|pid:none) Xylella fastidiosa M12, complete...   122   1e-26
CU928175_343(CU928175|pid:none) Zygosaccharomyces rouxii strain ...   119   1e-25
protein update 2009. 7.29
PSORT 

 psg: 0.34  gvh: 0.37  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VSD352 is nuc
5' end seq. ID VSD352F
5' end seq. 
>VSD352F.Seq
CAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATCTATTTCATGCCA
CATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATCTCAATGGAACTCAAATATCCA
ATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATT
AAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATACTGTTACA
ATTGGTGGTTTTGCTGTCAATGGTAATCATTTAGTTGTCGTAACCACTTTAGATAATTTA
TTAAAAGGTGCTGCAACTCAAGCACTTCAAAATATGAATATTTGTTTAGGTTTAGATGAA
TTAGCAAGTATTAAAAATGAATTATAAAAATATTTTTATAATCTAAAAAAAAANGAAAAT
AAAAAAAAAA----------
Length of 5' end seq. 430
3' end seq. ID VSD352Z
3' end seq. 
>VSD352Z.Seq
----------CAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATCTA
TTTCATGCCACATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATCTCAATGGAACT
CAAATATCCAATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGA
ACCGTTAATTAAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACA
TACTGTTACAATTGGTGGTTTTGCTGTCAATGGTAATCATTTAGTTGTCGTAACCACTTT
AGATAATTTATTAAAAGGTGCTGCAACTCAAGCACTTCAAAATATGAATATTTGTTTAGG
TTTAGATGAATTAGCAAGTATTAAAAATAATTATAAAAATATTTTTATAATCTAAAAAAA
AAAGAA
Length of 3' end seq. 416
Connected seq. ID VSD352P
Connected seq. 
>VSD352P.Seq
CAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATCTATTTCATGCCA
CATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATCTCAATGGAACTCAAATATCCA
ATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGTTAATT
AAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATACTGTTACA
ATTGGTGGTTTTGCTGTCAATGGTAATCATTTAGTTGTCGTAACCACTTTAGATAATTTA
TTAAAAGGTGCTGCAACTCAAGCACTTCAAAATATGAATATTTGTTTAGGTTTAGATGAA
TTAGCAAGTATTAAAAATGAATTATAAAAATATTTTTATAATCTAAAAAAAAANGAAAAT
AAAAAAAAAA----------CAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTA
GTCCAATCTATTTCATGCCACATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATCT
CAATGGAACTCAAATATCCAATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCT
ATCAAAATGAACCGTTAATTAAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATA
GTGGTAAACATACTGTTACAATTGGTGGTTTTGCTGTCAATGGTAATCATTTAGTTGTCG
TAACCACTTTAGATAATTTATTAAAAGGTGCTGCAACTCAAGCACTTCAAAATATGAATA
TTTGTTTAGGTTTAGATGAATTAGCAAGTATTAAAAATAATTATAAAAATATTTTTATAA
TCTAAAAAAAAAAGAA
Length of connected seq. 846
Full length Seq ID -
Full length Seq. -
Length of full length seq. -