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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD344
Library VS
(Link to library)
Clone ID VSD344
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08358-1
Original site URL
Representative seq. ID VSD344P
(Link to Original site)
Representative DNA sequence 
>VSD344 (VSD344Q) /CSM/VS/VSD3-B/VSD344Q.Seq.d/
CGCGTCCGGACTACTGATTTCTACTAGCGTGGTAAAGCTTCGATGTAAGAAAACGAGGTG
AAAAAGGGTATCTTATATTATTCTAATCTATTTATTATTTTTACATTTTTGACGTAGATA
GTGTTAGAAACTAAAATTCGTTAGTTATTTGGATCTTCTTGAAAAAGTTGTTAGAAATTT
TTGGATGTTGTTAATAGATATTAATAAAGGTCTTGAAAAAGGGAATGTAAAAGGATCTAA
ACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAAAAAATTCTTTAGTAGTTATAA
ATTTTTTTTAACGACGATATTTAAAAGGAAATTAAAAAGAACTAAACGTAGTAGTAGTAG
TAGTAGTAGTATAAAACCACCCACTCATTTAGTAATTCTTTATTTTAGGATTTAAATTTC
AAGGTATTTAAATGCGTGAAAATAAAGAAAAAATAAAATGTATAGAAATAGAAAAAAATA
AATAAAAAAAAAAXXXXXXXXXXAGGGTATCTTATATTATTCTNATCTATTTATTATTTT
NACATTTTTNACGTAGATAGTGTTAGCNNCTNANNATTCGTTAGTTATTTGNATCTTCTT
AAAAAAGTTGTTAGANCATTTTTGNATGTTGTTAATAGATATTAATAAAGGTCTTGNAAA
AGGGAATGTAAAAGGATCTAAACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAN
AANCATTCTTTAGNAGTTATANATTTTTTTTNNCGACGATAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
rvrttdfy*rgkasm*enevkkgilyysnlfiiftflt*ivletkir*lfgss*ksc*kf
ldvvnry**rs*kreckri*ttylk*ll*efg*kil**l*iffnddi*keikkn*t****
***yktthsfsnslf*dlnfkvfkcvkikkk*nv*k*KKINKKK---

---GYLILFXSIYYFXIFXVDSVSXXXFVSYLXLLKKVVRXFLXVVNRY**rsxkreckr
i*ttylk*ll*efgxxhslxvixffxrry
Translated Amino Acid sequence (All Frames) 
Frame A:
rvrttdfy*rgkasm*enevkkgilyysnlfiiftflt*ivletkir*lfgss*ksc*kf
ldvvnry**rs*kreckri*ttylk*ll*efg*kil**l*iffnddi*keikkn*t****
***yktthsfsnslf*dlnfkvfkcvkikkk*nv*k*KKINKKK---

---rvsyiiliyllfxhfxrr*c*xlxir*lfxss*ksc*xifxcc**ilikvlxkgm*k
dlnyip*vtvmrvrixxffxsyxffxxti

Frame B:
asgllistsvvklrckktr*krvsyiiliyllflhf*rr*c*klkfvsyldllekvvrnf
wmllidinkglekgnvkgsklhtlsdcyessdkkffssykfflttifkrklkrtkrssss
sssikppthlvilyfri*isrylna*k*rknkmyrnrkk*ikkk---

---GYLILFXSIYYFXIFXVDSVSXXXFVSYLXLLKKVVRXFLXVVNRY**rsxkreckr
i*ttylk*ll*efgxxhslxvixffxrry

Frame C:
rpdy*fllaw*sfdvrkrgekgylilf*siyyfyifdvdsvrn*nslviwiflkklleif
gcc**ilikvlkkgm*kdlnyip*vtvmrvriknslvvinff*rrylkgn*kelnvvvvv
vvv*nhpli**ffilgfkfqgi*mrenkekikcieieknk*kk---

---gilyysxlfiixtfxt*ivlaxxxslvixiflkkllxhfxmllidinkglxkgnvkg
sklhtlsdcyessdxxil*xlxiffxdd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH552 (VSH552Q) /CSM/VS/VSH5-C/VSH552Q.Seq.d/                        640   0.0
VSD344 (VSD344Q) /CSM/VS/VSD3-B/VSD344Q.Seq.d/                        640   0.0
VSK211 (VSK211Q) /CSM/VS/VSK2-A/VSK211Q.Seq.d/                        624   e-178
VSJ773 (VSJ773Q) /CSM/VS/VSJ7-D/VSJ773Q.Seq.d/                        624   e-178
VSG862 (VSG862Q) /CSM/VS/VSG8-C/VSG862Q.Seq.d/                        624   e-178
VSF795 (VSF795Q) /CSM/VS/VSF7-D/VSF795Q.Seq.d/                        624   e-178
VSF684 (VSF684Q) /CSM/VS/VSF6-D/VSF684Q.Seq.d/                        624   e-178
VSF633 (VSF633Q) /CSM/VS/VSF6-B/VSF633Q.Seq.d/                        624   e-178
VSF486 (VSF486Q) /CSM/VS/VSF4-D/VSF486Q.Seq.d/                        624   e-178
VSF351 (VSF351Q) /CSM/VS/VSF3-C/VSF351Q.Seq.d/                        624   e-178
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA.      555  0.0  5
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   555  0.0  5
AF020409|AF020409.1 Dictyostelium discoideum DocA (docA) mRNA, complete cds.   131  1e-26  1
BH559284|BH559284.1 BOGXH07TR BOGX Brassica oleracea genomic clone BOGXH07, DNA sequence.    52  0.010  1
AC013809|AC013809.4 Homo sapiens clone RP11-21C18, LOW-PASS SEQUENCE SAMPLING.    48  0.041  4
AL355356|AL355356.4 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-411H20.    48  0.16  1
AF177764|AF177764.1 Homo sapiens phospholamban gene, exon 2 and complete cds.    48  0.16  1
BE156339|BE156339.1 QV0-HT0367-210400-203-b08 HT0367 Homo sapiens cDNA, mRNA sequence.    48  0.16  1
BZ070379|BZ070379.1 lkg25g08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    42  0.20  2
AC090337|AC090337.5 Homo sapiens chromosome 18, clone RP11-674P19, complete sequence.    38  0.22  5
dna update 2003. 8.21
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 695,074,857
protein update 2009. 7.29
PSORT 

 psg: 0.91  gvh: 0.49  alm: 0.35  top: 0.20  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VSD344 is cyt
5' end seq. ID VSD344F
5' end seq. 
>VSD344F.Seq
CGCGTCCGGACTACTGATTTCTACTAGCGTGGTAAAGCTTCGATGTAAGAAAACGAGGTG
AAAAAGGGTATCTTATATTATTCTAATCTATTTATTATTTTTACATTTTTGACGTAGATA
GTGTTAGAAACTAAAATTCGTTAGTTATTTGGATCTTCTTGAAAAAGTTGTTAGAAATTT
TTGGATGTTGTTAATAGATATTAATAAAGGTCTTGAAAAAGGGAATGTAAAAGGATCTAA
ACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAAAAAATTCTTTAGTAGTTATAA
ATTTTTTTTAACGACGATATTTAAAAGGAAATTAAAAAGAACTAAACGTAGTAGTAGTAG
TAGTAGTAGTATAAAACCACCCACTCATTTAGTAATTCTTTATTTTAGGATTTAAATTTC
AAGGTATTTAAATGCGTGAAAATAAAGAAAAAATAAAATGTATAGAAATAGAAAAAAATA
AATAAAAAAAAAA----------
Length of 5' end seq. 493
3' end seq. ID VSD344Z
3' end seq. 
>VSD344Z.Seq
----------AGGGTATCTTATATTATTCTNATCTATTTATTATTTTNACATTTTTNACG
TAGATAGTGTTAGCNNCTNANNATTCGTTAGTTATTTGNATCTTCTTAAAAAAGTTGTTA
GANCATTTTTGNATGTTGTTAATAGATATTAATAAAGGTCTTGNAAAAGGGAATGTAAAA
GGATCTAAACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATANAANCATTCTTTAG
NAGTTATANATTTTTTTTNNCGACGATAT
Length of 3' end seq. 259
Connected seq. ID VSD344P
Connected seq. 
>VSD344P.Seq
CGCGTCCGGACTACTGATTTCTACTAGCGTGGTAAAGCTTCGATGTAAGAAAACGAGGTG
AAAAAGGGTATCTTATATTATTCTAATCTATTTATTATTTTTACATTTTTGACGTAGATA
GTGTTAGAAACTAAAATTCGTTAGTTATTTGGATCTTCTTGAAAAAGTTGTTAGAAATTT
TTGGATGTTGTTAATAGATATTAATAAAGGTCTTGAAAAAGGGAATGTAAAAGGATCTAA
ACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAAAAAATTCTTTAGTAGTTATAA
ATTTTTTTTAACGACGATATTTAAAAGGAAATTAAAAAGAACTAAACGTAGTAGTAGTAG
TAGTAGTAGTATAAAACCACCCACTCATTTAGTAATTCTTTATTTTAGGATTTAAATTTC
AAGGTATTTAAATGCGTGAAAATAAAGAAAAAATAAAATGTATAGAAATAGAAAAAAATA
AATAAAAAAAAAA----------AGGGTATCTTATATTATTCTNATCTATTTATTATTTT
NACATTTTTNACGTAGATAGTGTTAGCNNCTNANNATTCGTTAGTTATTTGNATCTTCTT
AAAAAAGTTGTTAGANCATTTTTGNATGTTGTTAATAGATATTAATAAAGGTCTTGNAAA
AGGGAATGTAAAAGGATCTAAACTACATACCTTAAGTGACTGTTATGAGAGTTCGGATAN
AANCATTCTTTAGNAGTTATANATTTTTTTTNNCGACGATAT
Length of connected seq. 752
Full length Seq ID -
Full length Seq. -
Length of full length seq. -