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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD329
Library VS
(Link to library)
Clone ID VSD329
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10239-1
Original site URL
Representative seq. ID VSD329P
(Link to Original site)
Representative DNA sequence 
>VSD329 (VSD329Q) /CSM/VS/VSD3-B/VSD329Q.Seq.d/
GGATTTGTAGGATATCCATTAAAAAAAGATTTTCCAATAACTGGATATTTAGAAGTATAT
TATGATGTAAATGATAAAAAAATAATTTATAAACCAATAGAATTAATGCAGGAATATAGA
AATTATAATTTTGGAGCAGTATGGGGAGATTACGAAAGAAAAGTATATTTAGAAAATATA
ATAAAATAAAAGAATGTTAAATATAAGTAAAATATTTGAAGAAGTAAAAGTAATGAAAAA
TTTTACATTAAATTTTGGACCACAACATCCTGCAGCACATGGAGTGTTACGATTAATAGT
AGAATTAGAAAGCGAAAATGTAGTAAGAGTAGAACCACATATTGGGCTATTACATAGAGG
AACAGAAAAATTAATAGAAGGAAAAACCTATACACAAGCTTTACCATATTTTGATCGATT
AGATTATGTATCAATGAATGTTCAAGAACATGCATATTCATTAGCAGTTGAAAGATTATA
TTTAGATAGTTTAGATATAGAATTAGAAATTCCACAGCGAGCCTAAAGTAATCCGAGTAT
TATTTTAGTGAAATCXXXXXXXXXXAGTCGCATTTGATTTACCAATGAATATAAGTGAAG
ATATTTATAAATTTGTAATTCAATATAGAAAAAGATTAGAAGAAATTGAAGATATGTTAA
TAAATAATAGAATTTGGAAACAAAGATTAGTAGATATTGGAATAGTAAGCGCAGAAGAAG
CCTTAAACTATGGATTTACAGGACCATTATTAAGAGGAGCAGGGATCGTATATGATATTA
GAAAAAATTATCCATATGATGACTATGATAAATATGATTTTAAAATCATAATAGGAGAAG
AAAATAATTCATATACAAGATTTATAATAAGAATGAAAGAAATGTATCAAAGTTTATCCA
TAATAGAACAAGCATTAAATAATTTACGACCCGGTTTAATAAAATTAGAAGGAGTAAATA
TAACTGCACCAGATAGAGCATTTGTAAAAAAAGATATGGAATCATGTATTAATCATTTTA
AATTTTTTTCAGAAGGATTTATAATACCAGCAAATGAAAATTATACGATTGTAGAAGCAC
CAAAAGGAGAATTTGGAATATATTTAAATGCGAATGACACAGCGAAACCATATAGATGTA
GAATCAAAGCACCAGGTTTCTTACATTTACAAGGATTAAACATGATGTCAAAAGATCATT
TATTAGCTGANGTAGTAACCTTAATAGGAACTCAAGNATATAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
dl*dih*kkifq*ldi*kyimm*mikk*finq*n*crnieiiileqygeitkekyi*ki*
*nkrmlniskifeevkvmknftlnfgpqhpaahgvlrlivelesenvvrvephigllhrg
tekliegktytqalpyfdrldyvsmnvqehayslaverlyldsldieleipqra*SNPSI
ILVK---

---VAFDLPMNISEDIYKFVIQYRKRLEEIEDMLINNRIWKQRLVDIGIVSAEEALNYGF
TGPLLRGAGIVYDIRKNYPYDDYDKYDFKIIIGEENNSYTRFIIRMKEMYQSLSIIEQAL
NNLRPGLIKLEGVNITAPDRAFVKKDMESCINHFKFFSEGFIIPANENYTIVEAPKGEFG
IYLNANDTAKPYRCRIKAPGFLHLQGLNMMSKDHLLAXVVTLIGTQXY
Translated Amino Acid sequence (All Frames) 
Frame A:
gfvgyplkkdfpitgylevyydvndkkiiykpielmqeyrnynfgavwgdyerkvyleni
ik*knvkyk*ni*rsksnekfyikfwtttscstwsvtinsrirkrkcsksrttywait*r
nrkinrrknlytsftif*sirlcinecsrtcifiss*kiifr*fryrirnstaslk*sey
yfsei---

---sri*ftneyk*ryl*icnsi*kkirrn*ryvnk**nletkisrywnskrrrslklwi
yrtiikrsrdri*y*kklsi**l**i*f*nhnrrrk*fiykiynknernvskfihnrtsi
k*fttrfnkirrskynctr*sickkrygimy*sf*iffrriyntsk*klydcrstkrriw
nifkce*hseti*m*nqstrfltftrikhdvkrsfis*xsnlnrnsxi*

Frame B:
dl*dih*kkifq*ldi*kyimm*mikk*finq*n*crnieiiileqygeitkekyi*ki*
*nkrmlniskifeevkvmknftlnfgpqhpaahgvlrlivelesenvvrvephigllhrg
tekliegktytqalpyfdrldyvsmnvqehayslaverlyldsldieleipqra*SNPSI
ILVK---

---VAFDLPMNISEDIYKFVIQYRKRLEEIEDMLINNRIWKQRLVDIGIVSAEEALNYGF
TGPLLRGAGIVYDIRKNYPYDDYDKYDFKIIIGEENNSYTRFIIRMKEMYQSLSIIEQAL
NNLRPGLIKLEGVNITAPDRAFVKKDMESCINHFKFFSEGFIIPANENYTIVEAPKGEFG
IYLNANDTAKPYRCRIKAPGFLHLQGLNMMSKDHLLAXVVTLIGTQXY

Frame C:
icrisikkrfsnnwifrsil*ck**knnl*tnrinagi*kl*fwssmgrlrkksifrkyn
kikec*i*vkylkk*k**kilh*ildhnilqhmecyd***n*kakm**e*nhilgyyiee
qkn**kekpihklyhilid*imyq*mfknmhih*qlkdyi*iv*i*n*kfhsepkvirvl
f**n---

---shliyq*i*vkifinl*fniekd*kklkic**iiefgnkd**ile**aqkkp*tmdl
qdhy*eeqgsymilekiihmmtminmilks**ekkiihiqdl**e*kkcikvyp**nkh*
iiydpv**n*ke*i*lhqiehl*kkiwnhvliilnffqkdl*yqqmkiirl*khqkenle
yi*mrmtqrnhidveskhqvsyiykd*t*cqkiiy*lx**p**elkxi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD329 (VSD329Q) /CSM/VS/VSD3-B/VSD329Q.Seq.d/                       1834   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1241   0.0
VSA673 (VSA673Q) /CSM/VS/VSA6-D/VSA673Q.Seq.d/                       1189   0.0
VFA665 (VFA665Q) /CSM/VF/VFA6-C/VFA665Q.Seq.d/                       1158   0.0
VSA245 (VSA245Q) /CSM/VS/VSA2-B/VSA245Q.Seq.d/                       1003   0.0
VSC759 (VSC759Q) /CSM/VS/VSC7-C/VSC759Q.Seq.d/                        846   0.0
VSF657 (VSF657Q) /CSM/VS/VSF6-C/VSF657Q.Seq.d/                        710   0.0
SLH814 (SLH814Q) /CSM/SL/SLH8-A/SLH814Q.Seq.d/                        317   2e-85
VSG815 (VSG815Q) /CSM/VS/VSG8-A/VSG815Q.Seq.d/                        107   4e-22
CFH665 (CFH665Q) /CSM/CF/CFH6-C/CFH665Q.Seq.d/                         42   0.020
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D21196|D21196.1 Dictyostelium discoideum mitochondrial DNA.      833  0.0  5
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   833  0.0  8
X52680|X52680.1 D.discoideum mitochondrial DNA (ORF209).         141  2e-55  3
AF494279|AF494279.1 Chaetosphaeridium globosum mitochondrial DNA, complete  genome.   125  2e-44  6
AF353999|AF353999.1 Mesostigma viride mitochondrion, complete genome.   141  5e-43  4
U02970|U02970.1 Prototheca wickerhamii 263-11 complete mitochondrial DNA.    64  2e-42  7
U17009|U17009.2 Phytophthora infestans mitochondrion, complete genome.    86  1e-36  5
AF288092|AF288092.1 Naegleria gruberi mitochondrial DNA, complete genome.    80  3e-36  6
AF110138|AF110138.1 Nephroselmis olivacea mitochondrion, complete genome.    64  6e-32  8
AF007261|AF007261.1 Reclinomonas americana mitochondrial DNA, complete genome.    62  2e-26  5
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q2LCR5) RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa sub...   419   e-116
AY700145_6(AY700145|pid:none) Polysphondylium pallidum mitochond...   371   e-101
EU275727_24(EU275727|pid:none) Dictyostelium fasciculatum strain...   360   4e-98
EF463011_40(EF463011|pid:none) Chlorokybus atmophyticus strain S...   259   1e-67
(O21270) RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa sub...   259   1e-67
CR954200_15(CR954200|pid:none) Ostreococcus tauri mitochondrion,...   253   8e-66
FJ859351_37(FJ859351|pid:none) Micromonas sp. RCC299 mitochondri...   251   3e-65
AY494079_38(AY494079|pid:none) Fucus vesiculosus mitochondrion, ...   251   5e-65
AB035479_1(AB035479|pid:none) Physcomitrella patens mitochondria...   251   5e-65
AJ309976_1(AJ309976|pid:none) Leucobryum glaucum mitochondrial p...   250   9e-65
protein update 2009. 7.29
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VSD329 is cyt
5' end seq. ID VSD329F
5' end seq. 
>VSD329F.Seq
GGATTTGTAGGATATCCATTAAAAAAAGATTTTCCAATAACTGGATATTTAGAAGTATAT
TATGATGTAAATGATAAAAAAATAATTTATAAACCAATAGAATTAATGCAGGAATATAGA
AATTATAATTTTGGAGCAGTATGGGGAGATTACGAAAGAAAAGTATATTTAGAAAATATA
ATAAAATAAAAGAATGTTAAATATAAGTAAAATATTTGAAGAAGTAAAAGTAATGAAAAA
TTTTACATTAAATTTTGGACCACAACATCCTGCAGCACATGGAGTGTTACGATTAATAGT
AGAATTAGAAAGCGAAAATGTAGTAAGAGTAGAACCACATATTGGGCTATTACATAGAGG
AACAGAAAAATTAATAGAAGGAAAAACCTATACACAAGCTTTACCATATTTTGATCGATT
AGATTATGTATCAATGAATGTTCAAGAACATGCATATTCATTAGCAGTTGAAAGATTATA
TTTAGATAGTTTAGATATAGAATTAGAAATTCCACAGCGAGCCTAAAGTAATCCGAGTAT
TATTTTAGTGAAATC----------
Length of 5' end seq. 555
3' end seq. ID VSD329Z
3' end seq. 
>VSD329Z.Seq
----------AGTCGCATTTGATTTACCAATGAATATAAGTGAAGATATTTATAAATTTG
TAATTCAATATAGAAAAAGATTAGAAGAAATTGAAGATATGTTAATAAATAATAGAATTT
GGAAACAAAGATTAGTAGATATTGGAATAGTAAGCGCAGAAGAAGCCTTAAACTATGGAT
TTACAGGACCATTATTAAGAGGAGCAGGGATCGTATATGATATTAGAAAAAATTATCCAT
ATGATGACTATGATAAATATGATTTTAAAATCATAATAGGAGAAGAAAATAATTCATATA
CAAGATTTATAATAAGAATGAAAGAAATGTATCAAAGTTTATCCATAATAGAACAAGCAT
TAAATAATTTACGACCCGGTTTAATAAAATTAGAAGGAGTAAATATAACTGCACCAGATA
GAGCATTTGTAAAAAAAGATATGGAATCATGTATTAATCATTTTAAATTTTTTTCAGAAG
GATTTATAATACCAGCAAATGAAAATTATACGATTGTAGAAGCACCAAAAGGAGAATTTG
GAATATATTTAAATGCGAATGACACAGCGAAACCATATAGATGTAGAATCAAAGCACCAG
GTTTCTTACATTTACAAGGATTAAACATGATGTCAAAAGATCATTTATTAGCTGANGTAG
TAACCTTAATAGGAACTCAAGNATATAG
Length of 3' end seq. 678
Connected seq. ID VSD329P
Connected seq. 
>VSD329P.Seq
GGATTTGTAGGATATCCATTAAAAAAAGATTTTCCAATAACTGGATATTTAGAAGTATAT
TATGATGTAAATGATAAAAAAATAATTTATAAACCAATAGAATTAATGCAGGAATATAGA
AATTATAATTTTGGAGCAGTATGGGGAGATTACGAAAGAAAAGTATATTTAGAAAATATA
ATAAAATAAAAGAATGTTAAATATAAGTAAAATATTTGAAGAAGTAAAAGTAATGAAAAA
TTTTACATTAAATTTTGGACCACAACATCCTGCAGCACATGGAGTGTTACGATTAATAGT
AGAATTAGAAAGCGAAAATGTAGTAAGAGTAGAACCACATATTGGGCTATTACATAGAGG
AACAGAAAAATTAATAGAAGGAAAAACCTATACACAAGCTTTACCATATTTTGATCGATT
AGATTATGTATCAATGAATGTTCAAGAACATGCATATTCATTAGCAGTTGAAAGATTATA
TTTAGATAGTTTAGATATAGAATTAGAAATTCCACAGCGAGCCTAAAGTAATCCGAGTAT
TATTTTAGTGAAATC----------AGTCGCATTTGATTTACCAATGAATATAAGTGAAG
ATATTTATAAATTTGTAATTCAATATAGAAAAAGATTAGAAGAAATTGAAGATATGTTAA
TAAATAATAGAATTTGGAAACAAAGATTAGTAGATATTGGAATAGTAAGCGCAGAAGAAG
CCTTAAACTATGGATTTACAGGACCATTATTAAGAGGAGCAGGGATCGTATATGATATTA
GAAAAAATTATCCATATGATGACTATGATAAATATGATTTTAAAATCATAATAGGAGAAG
AAAATAATTCATATACAAGATTTATAATAAGAATGAAAGAAATGTATCAAAGTTTATCCA
TAATAGAACAAGCATTAAATAATTTACGACCCGGTTTAATAAAATTAGAAGGAGTAAATA
TAACTGCACCAGATAGAGCATTTGTAAAAAAAGATATGGAATCATGTATTAATCATTTTA
AATTTTTTTCAGAAGGATTTATAATACCAGCAAATGAAAATTATACGATTGTAGAAGCAC
CAAAAGGAGAATTTGGAATATATTTAAATGCGAATGACACAGCGAAACCATATAGATGTA
GAATCAAAGCACCAGGTTTCTTACATTTACAAGGATTAAACATGATGTCAAAAGATCATT
TATTAGCTGANGTAGTAACCTTAATAGGAACTCAAGNATATAG
Length of connected seq. 1233
Full length Seq ID -
Full length Seq. -
Length of full length seq. -