>VSD318 (VSD318Q) /CSM/VS/VSD3-A/VSD318Q.Seq.d/
XXXXXXXXXXTTCAAGAGCAATATATTGATAAAAAAGATTTCTCATTTTTAAATAATCAT
CATTTATGGATAAAATATCAAGATCAAGATTTCATAGTTAATGAAATTAAAAATCCAGAA
AACAATAATAACAATAACAATAATAATTTTTATTTAAATTGTTTTACAATTAAAGGAACT
GAAAATGAAATTAAAAAAGAATTAAATTTAAATGATAATGATAATGAAATAAATACATAT
GCAACATTTTCAATAACCAGATATCATTTTAAAATGCCTCAAAAAATTGATTTATATATT
GATTGTGTTATAAATTATGATAATAATCAAAATGGTAATAATAATAATAATAATAATAAT
AATAATAATAATAATAAAAATAAATTCTCATTATATGGTCATGTTAAATGTCAAGCAAAA
GATTATAGTGAACTTTTATTATTTTATATTTTATATAATCAACCAAAACCACTCAAACCA
AATATTATAAATTATCTTTTATCTTTAAAAAATAATGATAATAATAATAACGATAAAACA
AATCCAATCAATAAACTTCAATCACCAATTTCAAATGAAACTATTTTACAAACTCCAAAA
GTATTTGATGAAGATCCACTATTTAAATTTATTCAAAAAGGTGAAAATTCTCAAAACTCT
TCTTCAAATTCCTCAT

---QEQYIDKKDFSFLNNHHLWIKYQDQDFIVNEIKNPENNNNNNNNNFYLNCFTIKGTE
NEIKKELNLNDNDNEINTYATFSITRYHFKMPQKIDLYIDCVINYDNNQNGNNNNNNNNN
NNNNKNKFSLYGHVKCQAKDYSELLLFYILYNQPKPLKPNIINYLLSLKNNDNNNNDKTN
PINKLQSPISNETILQTPKVFDEDPLFKFIQKGENSQNSSSNSS

Frame A:
---sraiy**krflifk*ssfmdkisrsrfhs**n*ksrkq**q*q**flfklfyn*rn*
k*n*krikfk*****nkyicnifnnqisf*naskn*fiy*lcykl***skw*********
*****k*iliiwsc*msskrl**tfiilyfi*stkttqtkyyklsfifkk******r*nk
snq*tsitnfk*nyftnsksi**rsti*iyskr*kfsklffkfl


Frame B:
---QEQYIDKKDFSFLNNHHLWIKYQDQDFIVNEIKNPENNNNNNNNNFYLNCFTIKGTE
NEIKKELNLNDNDNEINTYATFSITRYHFKMPQKIDLYIDCVINYDNNQNGNNNNNNNNN
NNNNKNKFSLYGHVKCQAKDYSELLLFYILYNQPKPLKPNIINYLLSLKNNDNNNNDKTN
PINKLQSPISNETILQTPKVFDEDPLFKFIQKGENSQNSSSNSS


Frame C:
---ksnilikkishf*iiiiyg*nikikis*lmklkiqktiititiiifi*ivlqlkelk
mklkkn*i*mimimk*ihmqhfq*pdiilkclkkliyilivl*imiiikmviiiiiiiii
iiiikinshymvmlnvkqkiivnfyyfifyiinqnhsnqil*iifyl*kimiiiitikqi
qsinfnhqfqmklfyklqkylmkihylnlfkkvkilktllqiph

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD318 (VSD318Q) /CSM/VS/VSD3-A/VSD318Q.Seq.d/                        295   4e-79
SSC874 (SSC874Q) /CSM/SS/SSC8-D/SSC874Q.Seq.d/                         46   7e-04
CHD826 (CHD826Q) /CSM/CH/CHD8-B/CHD826Q.Seq.d/                         44   0.003
VFI239 (VFI239Q) /CSM/VF/VFI2-B/VFI239Q.Seq.d/                         42   0.011
SSK139 (SSK139Q) /CSM/SS/SSK1-B/SSK139Q.Seq.d/                         42   0.011
CHR195 (CHR195Q) /CSM/CH/CHR1-D/CHR195Q.Seq.d/                         42   0.011
CHQ410 (CHQ410Q) /CSM/CH/CHQ4-A/CHQ410Q.Seq.d/                         42   0.011
CHP810 (CHP810Q) /CSM/CH/CHP8-A/CHP810Q.Seq.d/                         42   0.011
CHO603 (CHO603Q) /CSM/CH/CHO6-A/CHO603Q.Seq.d/                         42   0.011
CHO513 (CHO513Q) /CSM/CH/CHO5-A/CHO513Q.Seq.d/                         42   0.011

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    42  1e-07  8
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    38  1e-05  10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          44  2e-04  9
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38  4e-04  10
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           36  5e-04  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36  7e-04  14
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    40  8e-04  10
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                 38  9e-04  11
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    38  0.001  11
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    32  0.001  12

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 525,317,859

 psg: 0.75  gvh: 0.21  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for VSD318 is nuc

>VSD318Z.Seq
----------TTCAAGAGCAATATATTGATAAAAAAGATTTCTCATTTTTAAATAATCAT
CATTTATGGATAAAATATCAAGATCAAGATTTCATAGTTAATGAAATTAAAAATCCAGAA
AACAATAATAACAATAACAATAATAATTTTTATTTAAATTGTTTTACAATTAAAGGAACT
GAAAATGAAATTAAAAAAGAATTAAATTTAAATGATAATGATAATGAAATAAATACATAT
GCAACATTTTCAATAACCAGATATCATTTTAAAATGCCTCAAAAAATTGATTTATATATT
GATTGTGTTATAAATTATGATAATAATCAAAATGGTAATAATAATAATAATAATAATAAT
AATAATAATAATAATAAAAATAAATTCTCATTATATGGTCATGTTAAATGTCAAGCAAAA
GATTATAGTGAACTTTTATTATTTTATATTTTATATAATCAACCAAAACCACTCAAACCA
AATATTATAAATTATCTTTTATCTTTAAAAAATAATGATAATAATAATAACGATAAAACA
AATCCAATCAATAAACTTCAATCACCAATTTCAAATGAAACTATTTTACAAACTCCAAAA
GTATTTGATGAAGATCCACTATTTAAATTTATTCAAAAAGGTGAAAATTCTCAAAACTCT
TCTTCAAATTCCTCAT