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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD315
Library VS
(Link to library)
Clone ID VSD315
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05349-1
Original site URL
Representative seq. ID VSD315E
(Link to Original site)
Representative DNA sequence 
>VSD315 (VSD315Q) /CSM/VS/VSD3-A/VSD315Q.Seq.d/
CCCCCCTCGAGGTCGACCCCGCGTCCGCCACAAAGAAAAAAAAAGAATAAAAATAAAATA
AAGTACACAATCCACACACACACACCTCAAGTAAATACATCATATAAATTTAGAATATTA
TATAATGAATTCAATGATTAGAAATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAA
TACAAGTGGTTTAGTTTTTAGACAAACAAATGTTAATTTTTTAAAATCCTCAACAACCAC
AACAGCAATTAAAAGTGGAATTTTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAG
AGTATTGGATCATTATAATAACCCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGA
TGTTGGTACTGCAACCGTTGGTGCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAA
GGTAAAGGAAAACATTGTTGTCGATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAAT
CGCTTCAAGTTCATTGGCAACTGAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGA
AATTAAAAATACCGATATCGCAAAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAG
TATGCTTGCCGAACAAGCTATCAAAAGAGCTATCTATGATTACAAAGTTAAACATGAAAA
ATTAAATTCATCTGAACAAACTACAATTGAAACTACTGCATCTTTGTAAATAATTTTAAT
AATTTAAAAAAATAAATAAAAAAATAAAANAA
sequence update 2001. 3.23
Translated Amino Acid sequence 
pprgrprvrhkekkrikik*stqsththlk*IHHINLEYYIMNSMIRNVLKTTTNVGLKN
TSGLVFRQTNVNFLKSSTTTTAIKSGIFGELITKRNYHERVLDHYNNPRNIGSFDKKDID
VGTATVGAPACGDVMKIQIKVKENIVVDVCFKTFGCGSAIASSSLATEWVKGKTLDQCLE
IKNTDIAKHLSLPPVKMHCSMLAEQAIKRAIYDYKVKHEKLNSSEQTTIETTASL*iili
i*knk*knkx
Translated Amino Acid sequence (All Frames) 
Frame A:
ppsrstprppqrkkknknkikytihthtpqvntsykfrilynefnd*kct*nynkcwfkk
ykwfsf*tnkc*ffkilnnhnsn*kwnfwrtnykkkls*ksigsl**pkkywvir*eryr
cwycnrwctsmw*ryensnqgkgkhccrclfqnfwlwfcnrfkfign*mgkr*nirsmsr
n*kyryrktsltstsknal*yacrtsyqksyl*lqs*t*kikfi*tnyn*nycifvnnfn
nlkk*ikk*x


Frame B:
pprgrprvrhkekkrikik*stqsththlk*IHHINLEYYIMNSMIRNVLKTTTNVGLKN
TSGLVFRQTNVNFLKSSTTTTAIKSGIFGELITKRNYHERVLDHYNNPRNIGSFDKKDID
VGTATVGAPACGDVMKIQIKVKENIVVDVCFKTFGCGSAIASSSLATEWVKGKTLDQCLE
IKNTDIAKHLSLPPVKMHCSMLAEQAIKRAIYDYKVKHEKLNSSEQTTIETTASL*iili
i*knk*knkx


Frame C:
plevdpasatkkkke*k*nkvhnphthtsskyii*i*nii**iq*lemylklqqmlv*ki
qvv*fldkqmlif*npqqpqqqlkveflen*lqkeiimkeywiiiitqeilghsirkism
lvlqplvhqhvvtl*kfksr*rktllsmfvskllvvvlqslqvhwqlng*kvkh*invsk
lkipisqnishfhq*kcivvclpnklskelsmitklnmkn*ihlnklqlkllhlck*f**
fkkinkkikx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD315 (VSD315Q) /CSM/VS/VSD3-A/VSD315Q.Seq.d/                       1269   0.0
SSK562 (SSK562Q) /CSM/SS/SSK5-C/SSK562Q.Seq.d/                       1269   0.0
SSI841 (SSI841Q) /CSM/SS/SSI8-B/SSI841Q.Seq.d/                       1166   0.0
SSJ623 (SSJ623Q) /CSM/SS/SSJ6-A/SSJ623Q.Seq.d/                       1106   0.0
SSH360 (SSH360Q) /CSM/SS/SSH3-C/SSH360Q.Seq.d/                        565   e-160
VSD340 (VSD340Q) /CSM/VS/VSD3-B/VSD340Q.Seq.d/                         56   8e-07
VSK455 (VSK455Q) /CSM/VS/VSK4-C/VSK455Q.Seq.d/                         54   3e-06
VSK240 (VSK240Q) /CSM/VS/VSK2-B/VSK240Q.Seq.d/                         54   3e-06
VSK138 (VSK138Q) /CSM/VS/VSK1-B/VSK138Q.Seq.d/                         54   3e-06
VSJ376 (VSJ376Q) /CSM/VS/VSJ3-D/VSJ376Q.Seq.d/                         54   3e-06
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BE921448|BE921448.1 EST425133 potato leaves and petioles Solanum tuberosum cDNA clone cSTB13J19 5' sequence, mRNA sequence.    44  5e-16  5
BF188623|BF188623.1 EST444910 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA45E24 5' sequence, mRNA sequence.    44  5e-16  5
BF188028|BF188028.1 EST444315 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA43O5 5' sequence, mRNA sequence.    44  9e-16  5
BG098716|BG098716.1 EST463235 sprouting eyes/shoots Solanum tuberosum cDNA clone cSTC5B3 5' sequence, mRNA sequence.    44  9e-16  5
BI176136|BI176136.1 EST517219 cSTS Solanum tuberosum cDNA clone cSTS27D22 5' sequence, mRNA sequence.    44  9e-16  5
BG594001|BG594001.1 EST492679 cSTS Solanum tuberosum cDNA clone cSTS6M7 5' sequence, mRNA sequence.    44  9e-16  5
BQ047062|BQ047062.1 EST596180 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI16J5 5' end, mRNA sequence.    44  2e-15  5
BQ111941|BQ111941.2 EST597517 mixed potato tissues Solanum tuberosum cDNA clone STMCE12 5' end, mRNA sequence.    44  2e-15  5
BG098390|BG098390.1 EST462909 sprouting eyes/shoots Solanum tuberosum cDNA clone cSTC2D6 5' sequence, mRNA sequence.    44  2e-15  5
BG589584|BG589584.1 EST497426 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI2C14 5' sequence, mRNA sequence.    44  2e-15  5
dna update 2003. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GN111776_1(GN111776|pid:none) Sequence 16557 from Patent WO20090...   202   9e-51
EU952383_1(EU952383|pid:none) Zea mays clone 1279145 nifU-like N...   202   9e-51
BT040469_1(BT040469|pid:none) Zea mays full-length cDNA clone ZM...   202   1e-50
GN111528_1(GN111528|pid:none) Sequence 16309 from Patent WO20090...   200   4e-50
GN111710_1(GN111710|pid:none) Sequence 16491 from Patent WO20090...   199   8e-50
GN111536_1(GN111536|pid:none) Sequence 16317 from Patent WO20090...   199   8e-50
GN111772_1(GN111772|pid:none) Sequence 16553 from Patent WO20090...   198   1e-49
EF676161_1(EF676161|pid:none) Picea sitchensis clone WS02715_O21...   198   2e-49
GN111526_1(GN111526|pid:none) Sequence 16307 from Patent WO20090...   197   2e-49
AC120986_18(AC120986|pid:none) Oryza sativa (japonica cultivar-g...   196   5e-49
protein update 2009. 7.29
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VSD315 is nuc
5' end seq. ID VSD315F
5' end seq. 
>VSD315F.Seq
CCCCCCTCGAGGTCGACCCCGCGTCCGCCACAAAGAAAAAAAAAGAATAAAAATAAAATA
AAGTACACAATCCACACACACACACCTCAAGTAAATACATCATATAAATTTAGAATATTA
TATAATGAATTCAATGATTAGAAATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAA
TACAAGTGGTTTAGTTTTTAGACAAACAAATGTTAATTTTTTAAAATCCTCAACAACCAC
AACAGCAATTAAAAGTGGAATTTTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAG
AGTATTGGATCATTATAATAACCCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGA
TGTTGGTACTGCAACCGTTGGTGCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAA
GGTAAAGGAAAACATTGTTGTCGATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAAT
CGCTTCAAGTTCATTGGCAACTGAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGA
AATTAAAAATACCGATATCGCAAAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAG
TATGCTTGC----------
Length of 5' end seq. 609
3' end seq. ID VSD315Z
3' end seq. 
>VSD315Z.Seq
----------CCACACACACACACCTCAAGTAAATACATCATATAAATTTAGAATATTAT
ATAATGAATTCAATGATTAGAAATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAAT
ACAAGTGGTTTAGTTTTTAGACAAACAAATGTTAATTTTTTAAAATCCTCAACAACCACA
ACAGCAATTAAAAGTGGAATTTTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAGA
GTATTGGATCATTATAATAACCCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGAT
GTTGGTACTGCAACCGTTGGTGCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAAG
GTAAAGGAAAACATTGTTGTCGATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAATC
GCTTCAAGTTCATTGGCAACTGAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGAA
ATTAAAAATACCGATATCGCAAAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAGT
ATGCTTGCCGAACAAGCTATCAAAAGAGCTATCTATGATTACAAAGTTAAACATGAAAAA
TTAAATTCATCTGAACAAACTACAATTGAAACTACTGCATCTTTGTAAATAATTTTAATA
ATTTAAAAAAATAAATAAAAAAATAAAANAA
Length of 3' end seq. 681
Connected seq. ID VSD315P
Connected seq. 
>VSD315P.Seq
CCCCCCTCGAGGTCGACCCCGCGTCCGCCACAAAGAAAAAAAAAGAATAAAAATAAAATA
AAGTACACAATCCACACACACACACCTCAAGTAAATACATCATATAAATTTAGAATATTA
TATAATGAATTCAATGATTAGAAATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAA
TACAAGTGGTTTAGTTTTTAGACAAACAAATGTTAATTTTTTAAAATCCTCAACAACCAC
AACAGCAATTAAAAGTGGAATTTTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAG
AGTATTGGATCATTATAATAACCCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGA
TGTTGGTACTGCAACCGTTGGTGCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAA
GGTAAAGGAAAACATTGTTGTCGATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAAT
CGCTTCAAGTTCATTGGCAACTGAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGA
AATTAAAAATACCGATATCGCAAAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAG
TATGCTTGC----------CCACACACACACACCTCAAGTAAATACATCATATAAATTTA
GAATATTATATAATGAATTCAATGATTAGAAATGTACTTAAAACTACAACAAATGTTGGT
TTAAAAAATACAAGTGGTTTAGTTTTTAGACAAACAAATGTTAATTTTTTAAAATCCTCA
ACAACCACAACAGCAATTAAAAGTGGAATTTTTGGAGAACTAATTACAAAAAGAAATTAT
CATGAAAGAGTATTGGATCATTATAATAACCCAAGAAATATTGGGTCATTCGATAAGAAA
GATATCGATGTTGGTACTGCAACCGTTGGTGCACCAGCATGTGGTGACGTTATGAAAATT
CAAATCAAGGTAAAGGAAAACATTGTTGTCGATGTTTGTTTCAAAACTTTTGGTTGTGGT
TCTGCAATCGCTTCAAGTTCATTGGCAACTGAATGGGTAAAAGGTAAAACATTAGATCAA
TGTCTCGAAATTAAAAATACCGATATCGCAAAACATCTCTCACTTCCACCAGTAAAAATG
CATTGTAGTATGCTTGCCGAACAAGCTATCAAAAGAGCTATCTATGATTACAAAGTTAAA
CATGAAAAATTAAATTCATCTGAACAAACTACAATTGAAACTACTGCATCTTTGTAAATA
ATTTTAATAATTTAAAAAAATAAATAAAAAAATAAAANAA
Length of connected seq. 1290
Full length Seq ID VSD315E
Full length Seq. 
>VSD315E.Seq
CCCCCCTCGAGGTCGACCCCGCGTCCGCCACAAAGAAAAAAAAAGAATAAAAATAAAATA
AAGTACACAATCCACACACACACACCTCAAGTAAATACATCATATAAATTTAGAATATTA
TATAATGAATTCAATGATTAGAAATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAA
TACAAGTGGTTTAGTTTTTAGACAAACAAATGTTAATTTTTTAAAATCCTCAACAACCAC
AACAGCAATTAAAAGTGGAATTTTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAG
AGTATTGGATCATTATAATAACCCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGA
TGTTGGTACTGCAACCGTTGGTGCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAA
GGTAAAGGAAAACATTGTTGTCGATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAAT
CGCTTCAAGTTCATTGGCAACTGAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGA
AATTAAAAATACCGATATCGCAAAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAG
TATGCTTGCCGAACAAGCTATCAAAAGAGCTATCTATGATTACAAAGTTAAACATGAAAA
ATTAAATTCATCTGAACAAACTACAATTGAAACTACTGCATCTTTGTAAATAATTTTAAT
AATTTAAAAAAATAAATAAAAAAATAAAANAA
Length of full length seq. 752