NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD305
Library VS
(Link to library)
Clone ID VSD305
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSD305F
(Link to Original site)
Representative DNA sequence 
>VSD305 (VSD305Q) /CSM/VS/VSD3-A/VSD305Q.Seq.d/
TTTTTTTTTNAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTTTNNNNAAAAAAAAAA
AAGGGGGGGGGGGNTTTTTTTTTTNAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
FFFXKKKKIFFFFFFXXKKKKGGGXFFFXKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
FFFXKKKKIFFFFFFXXKKKKGGGXFFFXKK---


Frame B:
ffxkkkkkfffffffxxkkkrgggxffxkk---


Frame C:
ffxkkkknffffffxxkkkkggggfffxkk---
Homology vs CSM-cDNA 

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VSD305 (VSD305Q) /CSM/VS/VSD3-A/VSD305Q.Seq.d/    660  0.0
VSJ503 (VSJ503Q) /CSM/VS/VSJ5-A/VSJ503Q.Seq.d/    644  0.0
VSD821 (VSD821Q) /CSM/VS/VSD8-A/VSD821Q.Seq.d/    644  0.0
VSJ318 (VSJ318Q) /CSM/VS/VSJ3-A/VSJ318Q.Seq.d/    644  0.0
VSH772 (VSH772Q) /CSM/VS/VSH7-C/VSH772Q.Seq.d/    644  0.0
VSH349 (VSH349Q) /CSM/VS/VSH3-C/VSH349Q.Seq.d/    644  0.0
VSJ354 (VSJ354Q) /CSM/VS/VSJ3-C/VSJ354Q.Seq.d/    644  0.0
VSD586 (VSD586Q) /CSM/VS/VSD5-D/VSD586Q.Seq.d/    644  0.0
VSD474 (VSD474Q) /CSM/VS/VSD4-D/VSD474Q.Seq.d/    644  0.0
VSJ646 (VSJ646Q) /CSM/VS/VSJ6-B/VSJ646Q.Seq.d/    644  0.0
own update 2000.12.16
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
   -1.00    -1.00    -1.00

[blastall] WARNING:  [000.000]  SetUpBlastSearch failed.
[blastall] ERROR:  [000.000]  BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2003. 8.21
Homology vs Protein 

 ***** No hits found ******

  sequence database [Last update Mar/10/2006]
Lambda     K      H
   -1.00    -1.00    -1.00

Gapped
Lambda     K      H
   0.267   0.0410    0.140

[blastall] WARNING:  [000.000]  1142337643.dictycdb.pro: SetUpBlastSearch failed.
[blastall] ERROR:  [000.000]  1142337643.dictycdb.pro: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence
protein update 2006. 3.14
PSORT 

 psg: 1.02  gvh: 0.22  alm: 0.49  top: 0.67  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.56  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VSD305 is nuc
5' end seq. ID VSD305F
5' end seq. 
>VSD305F.Seq
TTTTTTTTTNAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTTTTTTNNNNAAAAAAAAAA
AAGGGGGGGGGGGNTTTTTTTTTTNAAAAAAAAA----------
Length of 5' end seq. 94
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -