VSD295
Library VS
(Link to library)
Clone ID VSD295
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15664-1
Original site URL
Representative seq. ID VSD295P
(Link to Original site)
Representative DNA sequence
>VSD295 (VSD295Q) /CSM/VS/VSD2-D/VSD295Q.Seq.d/
CAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACCACGTGATA
GATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAATATTTTCCAAT
TTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACCACTTGTTA
AATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAATTCCAG
ATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGTTCAAGAATTA
CTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGATATTCCAGATG
GTGTGGTTTTAGAAAATAAAGTACTTTCTGGCACTCTTAGAATTTTGGATCATTAAATTC
TACTCAAAAAATTAATTGGTCAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAANNNN
TTNNGGGTTTTTTTTTTTTTCCCCNAAANTTTTTTGCCCCCCCCCTTTNNAAAAAAAAXX
XXXXXXXXCAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACC
ACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAATAT
TTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACC
ACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATC
AATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGTTC
AAGAATTACTCTTAAAGGTA
sequence update 2001. 3.22
Translated Amino Acid sequence
srygyskf*efscnfctt**issn*inksiigctikyfpi*swss*ikfkerrsrcttc*
ig*rifnsfrl*kei*insrfigigssycfw*cllwfknys*ryshycs*sw*tc*ysrw
cgfrk*stfwhs*NFGSLNSTQKINWSKKKKXKKKKKKXXXGFFFFSPKXFCPPPXXKK-
--

---AGMGIQNFKNSVAIFVPRDRYRPIKSTSQLLVAQSNIFQFDHGQVKLNSKREGQDVP
LVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSGDVYFGSRITLKG


Translated Amino Acid sequence (All Frames)
Frame A:
qqvwvfkilriqlqflyhvidivqlnqqvnywlhnqifsnlimvkln*iqrekvkmyhll
nwvknfqqfqimkrdlnqfqiywnwiillflvmftlvqelllkvqsll*limvnvlifqm
vwf*kikyflallefwiikfyskn*lvkkkkxkkkkkkxxxxvffffpxxflpppfxkk-
--

---qqvwvfkilriqlqflyhvidivqlnqqvnywlhnqifsnlimvkln*iqrekvkmy
hllnwvknfqqfqimkrdlnqfqiywnwiillflvmftlvqelllkv

Frame B:
srygyskf*efscnfctt**issn*inksiigctikyfpi*swss*ikfkerrsrcttc*
ig*rifnsfrl*kei*insrfigigssycfw*cllwfknys*ryshycs*sw*tc*ysrw
cgfrk*stfwhs*NFGSLNSTQKINWSKKKKXKKKKKKXXXGFFFFSPKXFCPPPXXKK-
--

---srygyskf*efscnfctt**issn*inksiigctikyfpi*swss*ikfkerrsrct
tc*ig*rifnsfrl*kei*insrfigigssycfw*cllwfknys*r

Frame C:
agmgiqnfknsvaifvprdryrpikstsqllvaqsnifqfdhgqvklnskregqdvplvk
lgeefstvsdyekrfksipdlleldhltvsgdvyfgsritlkgtviivanhgervdipdg
vvlenkvlsgtlrildh*illkkligqkkkkxkkkkkkxxxgffffpxxffapplxkk--
-

---AGMGIQNFKNSVAIFVPRDRYRPIKSTSQLLVAQSNIFQFDHGQVKLNSKREGQDVP
LVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSGDVYFGSRITLKG

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD295 (VSD295Q) /CSM/VS/VSD2-D/VSD295Q.Seq.d/ 874 0.0
SSK668 (SSK668Q) /CSM/SS/SSK6-C/SSK668Q.Seq.d/ 874 0.0
SSI236 (SSI236Q) /CSM/SS/SSI2-B/SSI236Q.Seq.d/ 874 0.0
SSH420 (SSH420Q) /CSM/SS/SSH4-A/SSH420Q.Seq.d/ 874 0.0
SSF238 (SSF238Q) /CSM/SS/SSF2-B/SSF238Q.Seq.d/ 874 0.0
SSB729 (SSB729Q) /CSM/SS/SSB7-B/SSB729Q.Seq.d/ 874 0.0
FC-BQ21 (FC-BQ21Q) /CSM/FC/FC-BQ/FC-BQ21Q.Seq.d/ 874 0.0
FC-BQ20 (FC-BQ20Q) /CSM/FC/FC-BQ/FC-BQ20Q.Seq.d/ 874 0.0
SSE519 (SSE519Q) /CSM/SS/SSE5-A/SSE519Q.Seq.d/ 868 0.0
SFJ755 (SFJ755Q) /CSM/SF/SFJ7-C/SFJ755Q.Seq.d/ 862 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y00145|Y00145.1 Dictyostelium discoideum UDP glucose pyrophosphorylase gene (UDPGP; EC 2.7.7.9). 874 0.0 1
AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds. 50 2e-06 4
BI322718|BI322718.1 kx15d03.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 36 0.041 2
AZ201161|AZ201161.1 SP_0053_A1_D08_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=53 Col=15 Row=G, DNA sequence. 36 0.069 2
AF057019|AF057019.1 Dictyostelium discoideum interaptin (abpD) gene, complete cds. 30 0.21 5
AC006800|AC006800.3 Caenorhabditis elegans clone Y52A1, WORKING DRAFT SEQUENCE, 54 unordered pieces. 36 0.36 5
BI743473|BI743473.1 kx44f12.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 36 0.44 2
AF025463|AF025463.2 Caenorhabditis elegans cosmid K10B4, complete sequence. 38 0.45 3
BF249948|BF249948.1 pa88g07.y1 Hawdon Ancylostoma caninum L3 Ancylostoma caninum cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 46 0.72 1
BQ666262|BQ666262.1 pb38g03.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to TR:Q9XUS6 Q9XUS6 K08E3.5A PROTEIN. [1] ;, mRNA sequence. 46 0.72 1
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P08800) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 259 8e-68
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp... 163 6e-39
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 163 6e-39
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 163 6e-39
S62599(S62599)UTP-glucose-1-phosphate uridylyltransferase (EC 2.... 163 6e-39
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus... 163 6e-39
AK300731_1(AK300731|pid:none) Homo sapiens cDNA FLJ56155 complet... 163 6e-39
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro... 163 6e-39
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer... 163 6e-39
AF534111_1(AF534111|pid:none) Gallus gallus UDP-glucose pyrophos... 163 8e-39
protein update 2009. 7.29
PSORT

psg: 0.40 gvh: 0.51 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.12
nuc: 0.16 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall

>> prediction for VSD295 is cyt

5' end seq. ID VSD295F
5' end seq.
>VSD295F.Seq
CAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACCACGTGATA
GATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAATATTTTCCAAT
TTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACCACTTGTTA
AATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAATTCCAG
ATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGTTCAAGAATTA
CTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGATATTCCAGATG
GTGTGGTTTTAGAAAATAAAGTACTTTCTGGCACTCTTAGAATTTTGGATCATTAAATTC
TACTCAAAAAATTAATTGGTCAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAANNNN
TTNNGGGTTTTTTTTTTTTTCCCCNAAANTTTTTTGCCCCCCCCCTTTNNAAAAAAAA--
--------
Length of 5' end seq. 538
3' end seq. ID VSD295Z
3' end seq.
>VSD295Z.Seq
----------CAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTA
CCACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAAT
ATTTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTA
CCACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAA
TCAATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGT
TCAAGAATTACTCTTAAAGGTA
Length of 3' end seq. 312
Connected seq. ID VSD295P
Connected seq.
>VSD295P.Seq
CAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACCACGTGATA
GATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAATATTTTCCAAT
TTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACCACTTGTTA
AATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATCAATTCCAG
ATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGTTCAAGAATTA
CTCTTAAAGGTACAGTCATTATTGTAGCTAATCATGGTGAACGTGTTGATATTCCAGATG
GTGTGGTTTTAGAAAATAAAGTACTTTCTGGCACTCTTAGAATTTTGGATCATTAAATTC
TACTCAAAAAATTAATTGGTCAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAANNNN
TTNNGGGTTTTTTTTTTTTTCCCCNAAANTTTTTTGCCCCCCCCCTTTNNAAAAAAAA--
--------CAGCAGGTATGGGTATTCAAAATTTTAAGAATTCAGTTGCAATTTTTGTACC
ACGTGATAGATATCGTCCAATTAAATCAACAAGTCAATTATTGGTTGCACAATCAAATAT
TTTCCAATTTGATCATGGTCAAGTTAAATTAAATTCAAAGAGAGAAGGTCAAGATGTACC
ACTTGTTAAATTGGGTGAAGAATTTTCAACAGTTTCAGATTATGAAAAGAGATTTAAATC
AATTCCAGATTTATTGGAATTGGATCATCTTACTGTTTCTGGTGATGTTTACTTTGGTTC
AAGAATTACTCTTAAAGGTA
Length of connected seq. 850
Full length Seq ID -
Full length Seq. -
Length of full length seq. -