NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD237
Library VS
(Link to library)
Clone ID VSD237
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06521-1
Original site URL
Representative seq. ID VSD237P
(Link to Original site)
Representative DNA sequence 
>VSD237 (VSD237Q) /CSM/VS/VSD2-B/VSD237Q.Seq.d/
AAATAATTCAAATAATTCAAATAATAATAATTCAAATAATTTTAATGGTGGTGGTATATT
TTATTCAAAAGGTAAAAAAGTAAATAATCAAAATTCAAATAATTTTTATTTTACTTTTTC
AACTTTTGATTTTGATAATAATCAAATTCAAGAGAAATAATTTTTTTAATTTTTAAAGTA
AATATAAAAAAAAAATAAAAATAAAAATATAAAAATATTATAAATATTTGTAAATGTAAA
AAAAAAAXXXXXXXXXXAAATAATTCAAATAATTCAAATAATAATAATTCAAATAATTTT
AATGGTGGTGGTATATTTTATTCAAAAGGTAAAAAAGTAAATAATCAAAATTCAAATAAT
TTTTATTTTACTTTTTCAACTTTTGATTTTGATAATAATCAAATTCAAGAGAAATAATTT
TTTTAATTTTTAAAGTAAATATAAAAAAAAAATAAAAATAAAAATATAAAAATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
k*fk*fk***fk*f*wwwyilfkr*ksk*skfk*flfyffnf*f***snsreiiflifkv
nikkk*k*KYKNIINICKCKKK---

---NNSNNSNNNNSNNFNGGGIFYSKGKKVNNQNSNNFYFTFSTFDFDNNQIQEK*ff*f
lk*i*kknknkniki
Translated Amino Acid sequence (All Frames) 
Frame A:
k*fk*fk***fk*f*wwwyilfkr*ksk*skfk*flfyffnf*f***snsreiiflifkv
nikkk*k*KYKNIINICKCKKK---

---k*fk*fk***fk*f*wwwyilfkr*ksk*skfk*flfyffnf*f***snsreiifli
fkvnikkk*k*kykn

Frame B:
nnsnnsnnnnsnnfngggifyskgkkvnnqnsnnfyftfstfdfdnnqiqek*ff*flk*
i*kknknknikil*ifvnvkkk---

---NNSNNSNNNNSNNFNGGGIFYSKGKKVNNQNSNNFYFTFSTFDFDNNQIQEK*ff*f
lk*i*kknknkniki

Frame C:
iiqiiqiiiiqiilmvvvyfiqkvkk*iikiqiifillfqlliliiikfkrnnffnf*sk
ykkkikiki*kyykyl*m*kk---

---iiqiiqiiiiqiilmvvvyfiqkvkk*iikiqiifillfqlliliiikfkrnnffnf
*skykkkikiki*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD237 (VSD237Q) /CSM/VS/VSD2-B/VSD237Q.Seq.d/                        111   1e-23
SSM766 (SSM766Q) /CSM/SS/SSM7-C/SSM766Q.Seq.d/                         38   0.12
SSJ155 (SSJ155Q) /CSM/SS/SSJ1-C/SSJ155Q.Seq.d/                         38   0.12
CFD220 (CFD220Q) /CSM/CF/CFD2-A/CFD220Q.Seq.d/                         38   0.12
AFJ849 (AFJ849Q) /CSM/AF/AFJ8-C/AFJ849Q.Seq.d/                         36   0.46
VSG874 (VSG874Q) /CSM/VS/VSG8-D/VSG874Q.Seq.d/                         34   1.8
VSE649 (VSE649Q) /CSM/VS/VSE6-C/VSE649Q.Seq.d/                         34   1.8
VSD540 (VSD540Q) /CSM/VS/VSD5-B/VSD540Q.Seq.d/                         34   1.8
VSD409 (VSD409Q) /CSM/VS/VSD4-A/VSD409Q.Seq.d/                         34   1.8
VSD407 (VSD407Q) /CSM/VS/VSD4-A/VSD407Q.Seq.d/                         34   1.8
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC009623|AC009623.6 Homo sapiens chromosome 8, clone RP11-219J21, complete sequence.    44  1.5  1
AA621299|AA621299.1 zu83g01.s1 Soares_testis_NHT Homo sapiens cDNA clone IMAGE:744624 3' similar to contains Alu repetitive element;, mRNA sequence.    44  1.5  1
BX005201|BX005201.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-129C21.    44  1.5  1
AL601701|AL601701.1 Homo sapiens mRNA; EST DKFZp313A117_r1  (from clone DKFZp313A117).    44  1.5  1
BM271272|BM271272.1 sak07d03.y1 Gm-c1075 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1075-2453 5', mRNA sequence.    32  2.5  2
BX175678|BX175678.1 Danio rerio genomic clone DKEY-181A11, genomic survey sequence.    40  3.8  2
BX569789|BX569789.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-68O6.    42  6.1  1
AP006359|AP006359.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 4, clone:LjT36C13, TM0100c.    42  6.1  1
AC087523|AC087523.1 Homo sapiens chromosome 15 clone RP11-361D15 map 15, LOW-PASS SEQUENCE SAMPLING.    42  6.1  1
AE002117|AE002117.1 Ureaplasma urealyticum section 18 of 59 of the complete genome.    42  6.1  1
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QV5) RecName: Full=Cyclic AMP receptor-like protein D;             34   1.9
protein update 2009. 7.29
PSORT 

 psg: 0.36  gvh: 0.11  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSD237 is nuc
5' end seq. ID VSD237F
5' end seq. 
>VSD237F.Seq
AAATAATTCAAATAATTCAAATAATAATAATTCAAATAATTTTAATGGTGGTGGTATATT
TTATTCAAAAGGTAAAAAAGTAAATAATCAAAATTCAAATAATTTTTATTTTACTTTTTC
AACTTTTGATTTTGATAATAATCAAATTCAAGAGAAATAATTTTTTTAATTTTTAAAGTA
AATATAAAAAAAAAATAAAAATAAAAATATAAAAATATTATAAATATTTGTAAATGTAAA
AAAAAAA----------
Length of 5' end seq. 247
3' end seq. ID VSD237Z
3' end seq. 
>VSD237Z.Seq
----------AAATAATTCAAATAATTCAAATAATAATAATTCAAATAATTTTAATGGTG
GTGGTATATTTTATTCAAAAGGTAAAAAAGTAAATAATCAAAATTCAAATAATTTTTATT
TTACTTTTTCAACTTTTGATTTTGATAATAATCAAATTCAAGAGAAATAATTTTTTTAAT
TTTTAAAGTAAATATAAAAAAAAAATAAAAATAAAAATATAAAAATA
Length of 3' end seq. 217
Connected seq. ID VSD237P
Connected seq. 
>VSD237P.Seq
AAATAATTCAAATAATTCAAATAATAATAATTCAAATAATTTTAATGGTGGTGGTATATT
TTATTCAAAAGGTAAAAAAGTAAATAATCAAAATTCAAATAATTTTTATTTTACTTTTTC
AACTTTTGATTTTGATAATAATCAAATTCAAGAGAAATAATTTTTTTAATTTTTAAAGTA
AATATAAAAAAAAAATAAAAATAAAAATATAAAAATATTATAAATATTTGTAAATGTAAA
AAAAAAA----------AAATAATTCAAATAATTCAAATAATAATAATTCAAATAATTTT
AATGGTGGTGGTATATTTTATTCAAAAGGTAAAAAAGTAAATAATCAAAATTCAAATAAT
TTTTATTTTACTTTTTCAACTTTTGATTTTGATAATAATCAAATTCAAGAGAAATAATTT
TTTTAATTTTTAAAGTAAATATAAAAAAAAAATAAAAATAAAAATATAAAAATA
Length of connected seq. 464
Full length Seq ID -
Full length Seq. -
Length of full length seq. -