VSD229
Library VS
(Link to library)
Clone ID VSD229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15350-1
Original site URL
Representative seq. ID VSD229P
(Link to Original site)
Representative DNA sequence
>VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/
GAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGT
TGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCC
AACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTT
CAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATAT
TCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGT
TCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGG
TAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAG
ATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATT
CGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGTTCAACAACCAA
CCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAG
TCGCTGATGCTGCTGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAA
AAAAAAAAXXXXXXXXXXGAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTT
AGTTGGTGATGGTGGTGTTGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATT
CGAACCAAGATATATCCCAACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAA
TTTCGGTAAAATCCACTTCAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTT
AAGAGATGGTTATTATATTCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCG
TATTTCATACAAAAATGTTCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACAT
CCCAATCGTTTTATGTGGTAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCA
AATTGTTTTCCATCGTAGATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTA
CAATTTCGAAAAACCATTCGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCAC
TCTCGTTCAACAACCAACCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAG
TTTATATAAAAAGAAGTCGCTGATGCTGCTGCCCTCCCATTACCAGAAGACAA
sequence update 2001. 3.22
Translated Amino Acid sequence
kvkmaekeqiklvlvgdggvgkttfvqrhltgefepryiptlgvsvhplifytnfgkihf
nvwdtagqekfgglrdgyyiqgncaiimfdvtsrisyknvpnwhsdltrvcenipivlcg
nkvdvkdrkvkpsqivfhrrynlsyydvsaksnynfekpfvwltskllgnkavtsrsttn
lkitrnrsrfqlnefi*krsr*cccppitrrq**LVNKFKKK---

---KVKMAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGK
IHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIV
LCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQ
QPTLKLPETVLDSNLMSLYKKKSLMLLPSHYQKT


Translated Amino Acid sequence (All Frames)
Frame A:
es*ngrkrtn*islsw*wwcw*nhfcptssyw*irtkiypnswcispsinllhqfr*npl
qcmgyrwsrkirwfkrwllysr*lchyyv*chipyfiqkcsklal*fnqsl*khpnrfmw
*qs*c*rs*sqtipncfps*iqfiil*cfsqiklqfrktirlvniktpr*qgchfsfnnq
p*nyqkpfsipt**vymkkkslmllpshyqktmmtckqi*kk---

---es*ngrkrtn*islsw*wwcw*nhfcptssyw*irtkiypnswcispsinllhqfr*
nplqcmgyrwsrkirwfkrwllysr*lchyyv*chipyfiqkcsklal*fnqsl*khpnr
fmw*qs*c*rs*sqtipncfps*iqfiil*cfsqiklqfrktirlvniktpr*qgchsrs
ttnlkitrnrsrfqlnefi*kevadaaalplped

Frame B:
kvkmaekeqiklvlvgdggvgkttfvqrhltgefepryiptlgvsvhplifytnfgkihf
nvwdtagqekfgglrdgyyiqgncaiimfdvtsrisyknvpnwhsdltrvcenipivlcg
nkvdvkdrkvkpsqivfhrrynlsyydvsaksnynfekpfvwltskllgnkavtsrsttn
lkitrnrsrfqlnefi*krsr*cccppitrrq**LVNKFKKK---

---KVKMAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGK
IHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIV
LCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQ
QPTLKLPETVLDSNLMSLYKKKSLMLLPSHYQKT

Frame C:
klkwqkknkln*s*lvmvvlvkpllsnvillvnsnqdisqllvyqsih*sstpisvksts
mygiplvkknsvv*emviifkvivpllclmshpvfhtkmfqigtli*pefvktsqsfyvv
tklmlkivksnhpklfsivdtiyhtmmfqpnqitisknhssg*hqnssvtrlsllvqqpt
lklpetvldsnlmslyekevadaaalplpednddl*tnlkkk---

---klkwqkknkln*s*lvmvvlvkpllsnvillvnsnqdisqllvyqsih*sstpisvk
stsmygiplvkknsvv*emviifkvivpllclmshpvfhtkmfqigtli*pefvktsqsf
yvvtklmlkivksnhpklfsivdtiyhtmmfqpnqitisknhssg*hqnssvtrlslsfn
nqp*nyqkpfsipt**vyikrsr*cccppitrrq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/ 1304 0.0
SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/ 1289 0.0
SLA506 (SLA506Q) /CSM/SL/SLA5-A/SLA506Q.Seq.d/ 1283 0.0
VSI212 (VSI212Q) /CSM/VS/VSI2-A/VSI212Q.Seq.d/ 1273 0.0
AHG822 (AHG822Q) /CSM/AH/AHG8-A/AHG822Q.Seq.d/ 1241 0.0
VSG423 (VSG423Q) /CSM/VS/VSG4-A/VSG423Q.Seq.d/ 1205 0.0
VSG164 (VSG164Q) /CSM/VS/VSG1-C/VSG164Q.Seq.d/ 1178 0.0
VSI638 (VSI638Q) /CSM/VS/VSI6-B/VSI638Q.Seq.d/ 1156 0.0
VSF607 (VSF607Q) /CSM/VS/VSF6-A/VSF607Q.Seq.d/ 1118 0.0
SLH458 (SLH458Q) /CSM/SL/SLH4-C/SLH458Q.Seq.d/ 1116 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L09720|L09720.1 Dictyostelium discoideum GTP-binding protein (TC4/RAN) mRNA, complete cds. 1170 0.0 2
AX489114|AX489114.1 Sequence 6414 from Patent WO02053728. 115 4e-54 4
AF190700|AF190700.1 Candida albicans small G-protein Gsp1p (GSP1) gene, complete cds. 115 2e-52 3
CA758831|AAF60289.1, mRNA sequence. 74 9e-50 5
BM275423|BM275423.1 PfESToaa68f04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 6e-39 5
BU498261|BU498261.1 PfESToab94h09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 7e-39 5
BM273404|BM273404.1 PfESToaa50c11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 7e-39 5
BI815642|BI815642.1 PfESToaa31a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 7e-39 5
BI815554|BI815554.1 PfESToaa29h11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 7e-39 5
BQ452295|BQ452295.1 PfESToaa94h01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 7e-39 5
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P33519) RecName: Full=GTP-binding nuclear protein Ran; AltName:... 368 e-103
(O17915) RecName: Full=GTP-binding nuclear protein ran-1; AltNam... 275 3e-74
EF103373_1(EF103373|pid:none) Haliotis discus discus Ran-1-prov ... 274 4e-74
(P52301) RecName: Full=GTP-binding nuclear protein Ran; AltName:... 276 1e-73
JC1455(JC1455;S20712)GTP-binding protein Ran/TC4 - dog 279 1e-73
BC041293_1(BC041293|pid:none) Xenopus laevis RAN, member RAS onc... 276 2e-73
CR761555_1(CR761555|pid:none) Xenopus tropicalis finished cDNA, ... 276 2e-73
CP000499_469(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 271 2e-73
CR382138_83(CR382138|pid:none) Debaryomyces hansenii strain CBS7... 271 2e-73
(P32836) RecName: Full=GTP-binding nuclear protein GSP2/CNR2; &... 272 2e-73
protein update 2009. 7.29
PSORT

psg: 0.44 gvh: 0.35 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
16.0 %: mitochondrial
16.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VSD229 is cyt

5' end seq. ID VSD229F
5' end seq.
>VSD229F.Seq
GAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGT
TGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCC
AACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTT
CAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATAT
TCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGT
TCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGG
TAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAG
ATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATT
CGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGTTCAACAACCAA
CCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAG
TCGCTGATGCTGCTGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAA
AAAAAAAA----------
Length of 5' end seq. 668
3' end seq. ID VSD229Z
3' end seq.
>VSD229Z.Seq
----------GAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTG
ATGGTGGTGTTGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAA
GATATATCCCAACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTA
AAATCCACTTCAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATG
GTTATTATATTCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCAT
ACAAAAATGTTCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCG
TTTTATGTGGTAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTT
TCCATCGTAGATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCG
AAAAACCATTCGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTCTCGTTC
AACAACCAACCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATA
AAAAGAAGTCGCTGATGCTGCTGCCCTCCCATTACCAGAAGACAA
Length of 3' end seq. 635
Connected seq. ID VSD229P
Connected seq.
>VSD229P.Seq
GAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGT
TGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCC
AACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTT
CAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATAT
TCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGT
TCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGG
TAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAG
ATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATT
CGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGTTCAACAACCAA
CCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAG
TCGCTGATGCTGCTGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAA
AAAAAAAA----------GAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTT
AGTTGGTGATGGTGGTGTTGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATT
CGAACCAAGATATATCCCAACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAA
TTTCGGTAAAATCCACTTCAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTT
AAGAGATGGTTATTATATTCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCG
TATTTCATACAAAAATGTTCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACAT
CCCAATCGTTTTATGTGGTAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCA
AATTGTTTTCCATCGTAGATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTA
CAATTTCGAAAAACCATTCGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCAC
TCTCGTTCAACAACCAACCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAG
TTTATATAAAAAGAAGTCGCTGATGCTGCTGCCCTCCCATTACCAGAAGACAA
Length of connected seq. 1303
Full length Seq ID -
Full length Seq. -
Length of full length seq. -