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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD226
Library VS
(Link to library)
Clone ID VSD226
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04708-1
Original site URL
Representative seq. ID VSD226E
(Link to Original site)
Representative DNA sequence 
>VSD226 (VSD226Q) /CSM/VS/VSD2-B/VSD226Q.Seq.d/
CGCGTCCGAATTATCTCTATCTTTCTAAATATATATAATAGTTTTTTTTTTAAAACTTTT
TATATAAATTATATATATATACTCTTTTTAAAAGAAAACAAATAATCAACTAAAAAATGA
GCTCATCTGATGAATCAGGATCATCATCCTCAGAATCTGAAAAGAAAGTAAAGAAGACCC
CAGTCAAGAAGCCAAAGAAGGAACCAAAAGTTTCCAAAAAGGGTAAGAAAGAAGGTAAAA
AAACAAAGAAGAAGCCAAAGGATGAAAATGCTCCACGTCGTTATTTATCACCATTCATCT
TTTTCTCAAAGGACCACAGATCAGTAATCAAAAACTCTCATCCAAACTGTTCATTTGGTG
AAATCGGTAGCTTATTAGGTCAAGAATGGGCTAAAATCTCTGCAGAGGACAAAAAGAAAT
ACGAGAAATTAGCCGCTGAAGATAAGAAGAGATGGGAACTCGAAAAGAAAAACTATGATG
AAAAATTAAAAACCCAAAGTCAAGCAGAATCTTCATCCGATAGTTCTGATGAAAGTGATT
AAACTTTTAATTTAATTCACTCAATTATTTGTCACCACTATTACCATCATCATCATCATA
ATCATCATAATCAATTCATTCATCAATCAATCAATTCATCCATCATGTCTACAACCAACT
GTGTCACTCTCTCTTTCTCTCTCTACCTTTGTTGTTTATTTATAAAACCCAAACCAATCA
ACATTTCAACCACTAC
sequence update 2001. 3.25
Translated Amino Acid sequence 
rpnylylskyi**fff*nflyklyiytlfkrkqiin*KMSSSDESGSSSSESEKKVKKTP
VKKPKKEPKVSKKGKKEGKKTKKKPKDENAPRRYLSPFIFFSKDHRSVIKNSHPNCSFGE
IGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNYDEKLKTQSQAESSSDSSDESD*
tfnlihsiichhyyhhhhhnhhnqfihqsinssimsttncvtlsfslylcclfikpkpin
istt
Translated Amino Acid sequence (All Frames) 
Frame A:
rvriisiflniynsfffktfyinyiyilflkenk*stkk*ahlmnqdhhpqnlkrk*rrp
qsrsqrrnqkfpkrvrkkvkkqrrsqrmkmlhvviyhhssfsqrttdq*sktliqtvhlv
ksvay*vknglkslqrtkrntrn*plkirrdgnskrktmmkn*kpkvkqnlhpivlmkvi
klli*ftqlfvttitiiiiiiiiinsfinqsihpsclqptvslslslstfvvyl*npnqs
tfqpl


Frame B:
aselslsf*iyiivfflklfi*iiyiysf*kktnnqlkneli**iriiilri*keskedp
sqeakegtksfqkg*err*knkeeakg*kcstslfitihlflkgpqisnqklssklfiw*
nr*lirsrmg*nlcrgqkeireisr*r*eemgtrkekl**kiknpkssrifir*f**k*l
nf*fnslnylspllpssss*ss*sihssinqfihhvynqlchslflslpllfiyktqtnq
hfnhy


Frame C:
rpnylylskyi**fff*nflyklyiytlfkrkqiin*KMSSSDESGSSSSESEKKVKKTP
VKKPKKEPKVSKKGKKEGKKTKKKPKDENAPRRYLSPFIFFSKDHRSVIKNSHPNCSFGE
IGSLLGQEWAKISAEDKKKYEKLAAEDKKRWELEKKNYDEKLKTQSQAESSSDSSDESD*
tfnlihsiichhyyhhhhhnhhnqfihqsinssimsttncvtlsfslylcclfikpkpin
istt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD226 (VSD226Q) /CSM/VS/VSD2-B/VSD226Q.Seq.d/                        383   e-105
VSC488 (VSC488Q) /CSM/VS/VSC4-D/VSC488Q.Seq.d/                        383   e-105
SSM615 (SSM615Q) /CSM/SS/SSM6-A/SSM615Q.Seq.d/                        383   e-105
SSK552 (SSK552Q) /CSM/SS/SSK5-C/SSK552Q.Seq.d/                        383   e-105
SSJ422 (SSJ422Q) /CSM/SS/SSJ4-A/SSJ422Q.Seq.d/                        383   e-105
SSF827 (SSF827Q) /CSM/SS/SSF8-B/SSF827Q.Seq.d/                        383   e-105
VSE334 (VSE334Q) /CSM/VS/VSE3-B/VSE334Q.Seq.d/                        375   e-103
SSC417 (SSC417Q) /CSM/SS/SSC4-A/SSC417Q.Seq.d/                        339   4e-92
VSA790 (VSA790Q) /CSM/VS/VSA7-D/VSA790Q.Seq.d/                        325   5e-88
SSH724 (SSH724Q) /CSM/SS/SSH7-A/SSH724Q.Seq.d/                        180   2e-44
own update 2001. 3.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH280932|BH280932.1 CH230-109B5.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-109B5, DNA sequence.    42  0.015  2
AL391478|AL391478.14 Human DNA sequence from clone RP11-552I13 on chromosome 10.    40  0.038  2
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    46  0.15  3
BX102487|BX102487.1 RZPD Homo sapiens cDNA clone IMAGp998P024515 = IMAGE:1845745 5' EST.    48  0.16  1
BG540958|BG540958.1 602570112F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE:4694450 5', mRNA sequence.    48  0.16  1
AI217790|AI217790.1 qh25h01.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:1845745 3', mRNA sequence.    48  0.16  1
AL049180|AL049180.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P1.    36  0.22  5
BX255934|BX255934.7 Human DNA sequence from clone RP11-52F5 on chromosome 6.    44  0.23  6
AC144469|AC144469.2 Canis familiaris clone RP81-354N9, WORKING DRAFT SEQUENCE, 6 ordered pieces.    36  0.39  7
AC007126|AC007126.6 Homo sapiens chromosome 4 clone C0496D08, complete sequence.    46  0.60  2
dna update 2003. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR380954_369(CR380954|pid:none) Candida glabrata strain CBS138 c...    80   7e-14
(Q9UVL1) RecName: Full=Non-histone chromosomal protein 6;  &AF19...    78   3e-13
FM992691_147(FM992691|pid:none) Candida dubliniensis CD36 chromo...    78   3e-13
AM270016_26(AM270016|pid:none) Aspergillus niger contig An02c021...    77   4e-13
(Q6BRB4) RecName: Full=Non-histone chromosomal protein 6;  &CR38...    76   1e-12
(Q5B995) RecName: Full=Non-histone chromosomal protein 6;              76   1e-12
AM920428_902(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    75   2e-12
(Q4PBZ9) RecName: Full=Non-histone chromosomal protein 6;              75   2e-12
(Q4WY33) RecName: Full=Non-histone chromosomal protein 6;              75   3e-12
(Q75B82) RecName: Full=Non-histone chromosomal protein 6;  &AE01...    74   5e-12
protein update 2009. 7.29
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.36  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for VSD226 is nuc
5' end seq. ID VSD226F
5' end seq. 
>VSD226F.Seq
CGCGTCCGAATTATCTCTATCTTTCTAAATATATATAATAGTTTTTTTTTTAAAACTTTT
TATATAAATTATATATATATACTCTTTTTAAAAGAAAACAAATAATCAACTAAAAAATGA
GCTCATCTGATGAATCAGGATCATCATCCTCAGAATCTGAAAAGAAAGTAAAGAAGACCC
CAGTCAAGAAGCCAAAGAAGGAACCAAAAGTTTCCAAAANGGGTAAGAAAGAAGGTAAAA
AAACAAAGAAGAAGCCAAAGGATGAAAATGCTCCACGTCGTTATTTATCACCATTCATCT
TTTTCTCAAAGGACCACAGATCAGTAATCAAAAACTCTCATCCAAACTGTTCATTTGGTG
AAATCGGTAGCTTATTAGGTCAAGAATGGGCTAAAATCTCTGCAGAGGACAAAAAGAAAT
ACGAGAAATTAGCCGCTGAAGATAAGAAGAGATGGGAACTCGAAAAGAAAAACTATGATG
AAAAATTAAAAACCCAAAGTCAAGCAGAATCTTCATCCGATAGTTCTGATGAAAGTGATT
AAACTTTTAATTTAATTCACTCAATTATTTGT----------
Length of 5' end seq. 572
3' end seq. ID VSD226Z
3' end seq. 
>VSD226Z.Seq
----------TAGTTTTTTTTTTAAAACTTTTTATATAAATTATATATATATACTCTTTT
TAAAAGAAAACAAATAATCAACTAAAAAATGAGCTCATCTGATGAATCAGGATCATCATC
CTCAGAATCTGAAAAGAAAGTAAAGAAGACCCCAGTCAAGAAGCCAAAGAAGGAACCAAA
AGTTTCCAAAAAGGGTAAGAAAGAAGGTAAAAAAACAAAGAAGAAGCCAAAGGATGAAAA
TGCTCCACGTCGTTATTTATCACCATTCATCTTTTTCTCAAAGGACCACAGATCAGTAAT
CAAAAACTCTCATCCAAACTGTTCATTTGGTGAAATCGGTAGCTTATTAGGTCAAGAATG
GGCTAAAATCTCTGCAGAGGACAAAAAGAAATACGAGAAATTAGCCGCTGAAGATAAGAA
GAGATGGGAACTCGAAAAGAAAAACTATGATGAAAAATTAAAAACCCAAAGTCAAGCAGA
ATCTTCATCCGATAGTTCTGATGAAAGTGATTAAACTTTTAATTTAATTCACTCAATTAT
TTGTCACCACTATTACCATCATCATCATCATAATCATCATAATCAATTCATTCATCAATC
AATCAATTCATCCATCATGTCTACAACCAACTGTGTCACTCTCTCTTTCTCTCTCTACCT
TTGTTGTTTATTTATAAAACCCAAACCAATCAACATTTCAACCACTAC
Length of 3' end seq. 698
Connected seq. ID VSD226P
Connected seq. 
>VSD226P.Seq
CGCGTCCGAATTATCTCTATCTTTCTAAATATATATAATAGTTTTTTTTTTAAAACTTTT
TATATAAATTATATATATATACTCTTTTTAAAAGAAAACAAATAATCAACTAAAAAATGA
GCTCATCTGATGAATCAGGATCATCATCCTCAGAATCTGAAAAGAAAGTAAAGAAGACCC
CAGTCAAGAAGCCAAAGAAGGAACCAAAAGTTTCCAAAANGGGTAAGAAAGAAGGTAAAA
AAACAAAGAAGAAGCCAAAGGATGAAAATGCTCCACGTCGTTATTTATCACCATTCATCT
TTTTCTCAAAGGACCACAGATCAGTAATCAAAAACTCTCATCCAAACTGTTCATTTGGTG
AAATCGGTAGCTTATTAGGTCAAGAATGGGCTAAAATCTCTGCAGAGGACAAAAAGAAAT
ACGAGAAATTAGCCGCTGAAGATAAGAAGAGATGGGAACTCGAAAAGAAAAACTATGATG
AAAAATTAAAAACCCAAAGTCAAGCAGAATCTTCATCCGATAGTTCTGATGAAAGTGATT
AAACTTTTAATTTAATTCACTCAATTATTTGT----------TAGTTTTTTTTTTAAAAC
TTTTTATATAAATTATATATATATACTCTTTTTAAAAGAAAACAAATAATCAACTAAAAA
ATGAGCTCATCTGATGAATCAGGATCATCATCCTCAGAATCTGAAAAGAAAGTAAAGAAG
ACCCCAGTCAAGAAGCCAAAGAAGGAACCAAAAGTTTCCAAAAAGGGTAAGAAAGAAGGT
AAAAAAACAAAGAAGAAGCCAAAGGATGAAAATGCTCCACGTCGTTATTTATCACCATTC
ATCTTTTTCTCAAAGGACCACAGATCAGTAATCAAAAACTCTCATCCAAACTGTTCATTT
GGTGAAATCGGTAGCTTATTAGGTCAAGAATGGGCTAAAATCTCTGCAGAGGACAAAAAG
AAATACGAGAAATTAGCCGCTGAAGATAAGAAGAGATGGGAACTCGAAAAGAAAAACTAT
GATGAAAAATTAAAAACCCAAAGTCAAGCAGAATCTTCATCCGATAGTTCTGATGAAAGT
GATTAAACTTTTAATTTAATTCACTCAATTATTTGTCACCACTATTACCATCATCATCAT
CATAATCATCATAATCAATTCATTCATCAATCAATCAATTCATCCATCATGTCTACAACC
AACTGTGTCACTCTCTCTTTCTCTCTCTACCTTTGTTGTTTATTTATAAAACCCAAACCA
ATCAACATTTCAACCACTAC
Length of connected seq. 1270
Full length Seq ID VSD226E
Full length Seq. 
>VSD226E.Seq
CGCGTCCGAATTATCTCTATCTTTCTAAATATATATAATAGTTTTTTTTTTAAAACTTTT
TATATAAATTATATATATATACTCTTTTTAAAAGAAAACAAATAATCAACTAAAAAATGA
GCTCATCTGATGAATCAGGATCATCATCCTCAGAATCTGAAAAGAAAGTAAAGAAGACCC
CAGTCAAGAAGCCAAAGAAGGAACCAAAAGTTTCCAAAAAGGGTAAGAAAGAAGGTAAAA
AAACAAAGAAGAAGCCAAAGGATGAAAATGCTCCACGTCGTTATTTATCACCATTCATCT
TTTTCTCAAAGGACCACAGATCAGTAATCAAAAACTCTCATCCAAACTGTTCATTTGGTG
AAATCGGTAGCTTATTAGGTCAAGAATGGGCTAAAATCTCTGCAGAGGACAAAAAGAAAT
ACGAGAAATTAGCCGCTGAAGATAAGAAGAGATGGGAACTCGAAAAGAAAAACTATGATG
AAAAATTAAAAACCCAAAGTCAAGCAGAATCTTCATCCGATAGTTCTGATGAAAGTGATT
AAACTTTTAATTTAATTCACTCAATTATTTGTCACCACTATTACCATCATCATCATCATA
ATCATCATAATCAATTCATTCATCAATCAATCAATTCATCCATCATGTCTACAACCAACT
GTGTCACTCTCTCTTTCTCTCTCTACCTTTGTTGTTTATTTATAAAACCCAAACCAATCA
ACATTTCAACCACTAC
Length of full length seq. 736