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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD217
Library VS
(Link to library)
Clone ID VSD217
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12167-1
Original site URL
Representative seq. ID VSD217P
(Link to Original site)
Representative DNA sequence 
>VSD217 (VSD217Q) /CSM/VS/VSD2-A/VSD217Q.Seq.d/
TTGCAATTGATTTAATTCAAAATATACCACTGTATTTATTATTTTCACATTTAAAAATTC
AACAATTGGAAGGAGAGAAAATACTCTTTTCAGCAGAGAATATATTTTGTGTAGATAAAT
GTAATTTCCCACCGAATAAAGCAATGTTGGGTGAAATATGGGTAACTAATTTTAGAATCA
TCTTTATAAATTCAAATTCAAACTCTTCAACTATACCAAATTCAACATCATCAACTTCAA
TCTCATCATTTGCTTCAACTCAAAATCTTTCAATACTATCCATTATGACTCTATTTGGAA
GTTATAATGGTAATGGTGGTAGTGGTCCCACTAATGCAACTTTAAGTGGTGGTGGTTCAA
CTTCTTCCTCTTCAAATTTAAACACTCCAATAACAACTTCACCAATTCATACATCGACTA
ATAGTAATGGTGCAATTTTAAACCCAATAAATAATTCATTAATAAACTCAAAATAATAAT
AATAATAATAATAAAAACTAAGCTTTATAATTTAAAAAAAAAAXXXXXXXXXXTTGCAAT
TGATTTAATTCAAAATATACCACTGTATTTATTATTTTCACATTTAAAAATTCAACAATT
GGAAGGAGAGAAAATACTCTTTTCAGCAGAGAATATATTTTGTGTAGATAAATGTAATTT
CCCACCGAATAAAGCAATGTTGGGTGAAATATGGGTAACTAATTTTAGAATCATCTTTAT
AAATTCAAATTCAAACTCTTCAACTATACCAAATTCAACATCATCAACTTCAATCTCATC
ATTTGCTTCAACTCAAAATCTTTCAATACTATCCATTATGACTCTATTTGGAAGTTATAA
TGGTAATGGTGGTAGTGGTCCCACTAATGCAACTTTAAGTGGTGGTGGTTCAACTTCTTC
CTCTTCAAATTTAAACACTCCAATAACAACTTCACCAATTCATACATCGACTAATAGTAA
TGGTGCAATTTTAAACCCAATAAATAATTCATTAATAAACTCAAAAAATAATAATAAAAT
AATAAAAACTA
sequence update 2001. 3.22
Translated Amino Acid sequence 
cn*fnskyttvfiiftfknstigrrentlfsreyilcr*m*fpte*snvg*nmgn*f*nh
lykfkfklfnytkfniinfnliicfnsksfntihydsiwkl*w*ww*wsh*cnfkwwwfn
fflfkfkhsnnnftnsyid***wcnfkpnk*FINKLKIIIIIIIKTKLYNLKKK---

---AIDLIQNIPLYLLFSHLKIQQLEGEKILFSAENIFCVDKCNFPPNKAMLGEIWVTNF
RIIFINSNSNSSTIPNSTSSTSISSFASTQNLSILSIMTLFGSYNGNGGSGPTNATLSGG
GSTSSSSNLNTPITTSPIHTSTNSNGAILNPINNSLINSKNNNKIIKT
Translated Amino Acid sequence (All Frames) 
Frame A:
lqli*fkiyhciyyfhi*kfnnwkerkysfqqriyfv*invishrikqcwvkyg*liles
sl*iqiqtlqlyqiqhhqlqshhllqlkifqyypl*lylevimvmvvvvplmql*vvvvq
llplqi*tlq*qlhqfihrlivmvqf*tq*iih**tqnnnnnnnkn*al*fkkk---

---lqli*fkiyhciyyfhi*kfnnwkerkysfqqriyfv*invishrikqcwvkyg*li
lessl*iqiqtlqlyqiqhhqlqshhllqlkifqyypl*lylevimvmvvvvplmql*vv
vvqllplqi*tlq*qlhqfihrlivmvqf*tq*iih**tqkiiik**kl

Frame B:
cn*fnskyttvfiiftfknstigrrentlfsreyilcr*m*fpte*snvg*nmgn*f*nh
lykfkfklfnytkfniinfnliicfnsksfntihydsiwkl*w*ww*wsh*cnfkwwwfn
fflfkfkhsnnnftnsyid***wcnfkpnk*FINKLKIIIIIIIKTKLYNLKKK---

---cn*fnskyttvfiiftfknstigrrentlfsreyilcr*m*fpte*snvg*nmgn*f
*nhlykfkfklfnytkfniinfnliicfnsksfntihydsiwkl*w*ww*wsh*cnfkww
wfnfflfkfkhsnnnftnsyid***wcnfkpnk*finklkk***nnkn

Frame C:
aidliqniplyllfshlkiqqlegekilfsaenifcvdkcnfppnkamlgeiwvtnfrii
finsnsnsstipnstsstsissfastqnlsilsimtlfgsyngnggsgptnatlsgggst
ssssnlntpittspihtstnsngailnpinnslinsk*******klsfii*kk---

---AIDLIQNIPLYLLFSHLKIQQLEGEKILFSAENIFCVDKCNFPPNKAMLGEIWVTNF
RIIFINSNSNSSTIPNSTSSTSISSFASTQNLSILSIMTLFGSYNGNGGSGPTNATLSGG
GSTSSSSNLNTPITTSPIHTSTNSNGAILNPINNSLINSKNNNKIIKT
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD217 (VSD217Q) /CSM/VS/VSD2-A/VSD217Q.Seq.d/                        888   0.0
SLF845 (SLF845Q) /CSM/SL/SLF8-B/SLF845Q.Seq.d/                        472   e-132
VHN124 (VHN124Q) /CSM/VH/VHN1-A/VHN124Q.Seq.d/                         44   0.004
SSM622 (SSM622Q) /CSM/SS/SSM6-A/SSM622Q.Seq.d/                         44   0.004
SHJ555 (SHJ555Q) /CSM/SH/SHJ5-C/SHJ555Q.Seq.d/                         44   0.004
SFI863 (SFI863Q) /CSM/SF/SFI8-C/SFI863Q.Seq.d/                         44   0.004
SFI763 (SFI763Q) /CSM/SF/SFI7-C/SFI763Q.Seq.d/                         44   0.004
SFI481 (SFI481Q) /CSM/SF/SFI4-D/SFI481Q.Seq.d/                         44   0.004
SFF428 (SFF428Q) /CSM/SF/SFF4-B/SFF428Q.Seq.d/                         44   0.004
SFF162 (SFF162Q) /CSM/SF/SFF1-C/SFF162Q.Seq.d/                         44   0.004
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY170918|AY170918.1 Dictyostelium discoideum pats1 gene, partial cds.   888  0.0  3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44  4e-05  14
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38  1e-04  13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34  3e-04  14
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34  6e-04  10
AC145481|AC145481.1 Zea mays clone XX-23A1, *** SEQUENCING IN PROGRESS ***, 58 unordered pieces.    40  8e-04  6
AC107879|AC107879.1 Homo sapiens chromosome 18 clone RP11-584O12 map 18, LOW-PASS SEQUENCE SAMPLING.    42  0.002  2
AP005189|AP005189.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474B11.    42  0.004  2
AL731590|AL731590.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04.    42  0.004  3
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    32  0.007  12
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55E58) RecName: Full=Probable serine/threonine-protein kinase ...   147   5e-34
AY170918_1(AY170918|pid:none) Dictyostelium discoideum pats1 gen...   147   5e-34
protein update 2009. 3.20
PSORT 

 psg: 0.89  gvh: 0.53  alm: 0.36  top: 0.60  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal

>> prediction for VSD217 is cyt
5' end seq. ID VSD217F
5' end seq. 
>VSD217F.Seq
TTGCAATTGATTTAATTCAAAATATACCACTGTATTTATTATTTTCACATTTAAAAATTC
AACAATTGGAAGGAGAGAAAATACTCTTTTCAGCAGAGAATATATTTTGTGTAGATAAAT
GTAATTTCCCACCGAATAAAGCAATGTTGGGTGAAATATGGGTAACTAATTTTAGAATCA
TCTTTATAAATTCAAATTCAAACTCTTCAACTATACCAAATTCAACATCATCAACTTCAA
TCTCATCATTTGCTTCAACTCAAAATCTTTCAATACTATCCATTATGACTCTATTTGGAA
GTTATAATGGTAATGGTGGTAGTGGTCCCACTAATGCAACTTTAAGTGGTGGTGGTTCAA
CTTCTTCCTCTTCAAATTTAAACACTCCAATAACAACTTCACCAATTCATACATCGACTA
ATAGTAATGGTGCAATTTTAAACCCAATAAATAATTCATTAATAAACTCAAAATAATAAT
AATAATAATAATAAAAACTAAGCTTTATAATTTAAAAAAAAAA----------
Length of 5' end seq. 523
3' end seq. ID VSD217Z
3' end seq. 
>VSD217Z.Seq
----------TTGCAATTGATTTAATTCAAAATATACCACTGTATTTATTATTTTCACAT
TTAAAAATTCAACAATTGGAAGGAGAGAAAATACTCTTTTCAGCAGAGAATATATTTTGT
GTAGATAAATGTAATTTCCCACCGAATAAAGCAATGTTGGGTGAAATATGGGTAACTAAT
TTTAGAATCATCTTTATAAATTCAAATTCAAACTCTTCAACTATACCAAATTCAACATCA
TCAACTTCAATCTCATCATTTGCTTCAACTCAAAATCTTTCAATACTATCCATTATGACT
CTATTTGGAAGTTATAATGGTAATGGTGGTAGTGGTCCCACTAATGCAACTTTAAGTGGT
GGTGGTTCAACTTCTTCCTCTTCAAATTTAAACACTCCAATAACAACTTCACCAATTCAT
ACATCGACTAATAGTAATGGTGCAATTTTAAACCCAATAAATAATTCATTAATAAACTCA
AAAAATAATAATAAAATAATAAAAACTA
Length of 3' end seq. 498
Connected seq. ID VSD217P
Connected seq. 
>VSD217P.Seq
TTGCAATTGATTTAATTCAAAATATACCACTGTATTTATTATTTTCACATTTAAAAATTC
AACAATTGGAAGGAGAGAAAATACTCTTTTCAGCAGAGAATATATTTTGTGTAGATAAAT
GTAATTTCCCACCGAATAAAGCAATGTTGGGTGAAATATGGGTAACTAATTTTAGAATCA
TCTTTATAAATTCAAATTCAAACTCTTCAACTATACCAAATTCAACATCATCAACTTCAA
TCTCATCATTTGCTTCAACTCAAAATCTTTCAATACTATCCATTATGACTCTATTTGGAA
GTTATAATGGTAATGGTGGTAGTGGTCCCACTAATGCAACTTTAAGTGGTGGTGGTTCAA
CTTCTTCCTCTTCAAATTTAAACACTCCAATAACAACTTCACCAATTCATACATCGACTA
ATAGTAATGGTGCAATTTTAAACCCAATAAATAATTCATTAATAAACTCAAAATAATAAT
AATAATAATAATAAAAACTAAGCTTTATAATTTAAAAAAAAAA----------TTGCAAT
TGATTTAATTCAAAATATACCACTGTATTTATTATTTTCACATTTAAAAATTCAACAATT
GGAAGGAGAGAAAATACTCTTTTCAGCAGAGAATATATTTTGTGTAGATAAATGTAATTT
CCCACCGAATAAAGCAATGTTGGGTGAAATATGGGTAACTAATTTTAGAATCATCTTTAT
AAATTCAAATTCAAACTCTTCAACTATACCAAATTCAACATCATCAACTTCAATCTCATC
ATTTGCTTCAACTCAAAATCTTTCAATACTATCCATTATGACTCTATTTGGAAGTTATAA
TGGTAATGGTGGTAGTGGTCCCACTAATGCAACTTTAAGTGGTGGTGGTTCAACTTCTTC
CTCTTCAAATTTAAACACTCCAATAACAACTTCACCAATTCATACATCGACTAATAGTAA
TGGTGCAATTTTAAACCCAATAAATAATTCATTAATAAACTCAAAAAATAATAATAAAAT
AATAAAAACTA
Length of connected seq. 1021
Full length Seq ID -
Full length Seq. -
Length of full length seq. -