NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD182
Library VS
(Link to library)
Clone ID VSD182
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16248-1
Original site URL
Representative seq. ID VSD182P
(Link to Original site)
Representative DNA sequence 
>VSD182 (VSD182Q) /CSM/VS/VSD1-D/VSD182Q.Seq.d/
TAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCA
GAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACC
ACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGAAATCC
CAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTCAAGA
AAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTAC
CAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTTTTATCAT
CTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGTCCAGAGT
TGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGA
TTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAAXXXXXXXX
XXGTAACATTCAAACAATTAAAAGAAACCGAAAAAAGATTTCACTGTTGATGAAAATAAA
TTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCCAAG
AACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGAA
ATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTC
AAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCT
TTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTTTTA
TCATCTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGTACC
AGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAGATT
GTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAAAGT
GTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAATGATTCAAAATCTTTTGGGTATG
AAACATGGTGCTCCAAACAAACATCACATTATCCTCATTAAAAAATTATTAGGGTTATTA
AATTAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
niqtikrnrkrfhc**k*iqsctkq*nlngncqefrsqepqsfsr*k*s*cfkfiik*np
krf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**ts*cs*RCFNLTILFII
CNCNLQNWKCLCCRRFRSRVGGFTAAKNLIIVSGYNKIVDSDELAVQRTEQFCLPCE---

---NIQTIKRNRKKISLLMKINSELHQAMKP*wklsri*kprttefqslkmklml*iyy*
mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlinklmlvkml*phnt
fyhl*lqspklemfmlptlqvpelavslllki*ssflvitrllilmn*pskelnnsvyhv
kvfvlvgltkfqvq*fkifwv*nmvlqtnitlsslkny*gy*i
Translated Amino Acid sequence (All Frames) 
Frame A:
*hsnn*kkpkkisllmkinselhqamkp*wklsri*kprttefqslkmklml*iyy*mks
qkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlinklmlvkml*phntfyh
l*lqspklemfmlptlqvqswrfhcc*kfnhrfwl*qdc*f**isrpkn*tilftm*---

---vtfkqlketekrfhc**k*iqsctkq*nlngncqefrsqepqsfsr*k*s*cfkfii
k*npkrf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**ts*cs*rcfnlti
lfiicncnlqnwkclccrrfryqswrfhcc*kfnhrfwl*qdc*f**isrpkn*tilftm
*kcscslglqssrfndsksfgyetwcskqtshyph*kiirvikl

Frame B:
niqtikrnrkrfhc**k*iqsctkq*nlngncqefrsqepqsfsr*k*s*cfkfiik*np
krf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**ts*cs*RCFNLTILFII
CNCNLQNWKCLCCRRFRSRVGGFTAAKNLIIVSGYNKIVDSDELAVQRTEQFCLPCE---

---*hsnn*kkpkkdftvdenkfrvapsnetlmetvknleaknhrvsvveneadalnlll
neipkgsevmcassctideigfkkiyfsddspfvnvhkkilalpadkqadarkdaltsqy
flssvtaisktgnvyvadasgtrvggftaaknliivsgynkivdsdelavqrteqfclpc
esvrarwaykvpgsmiqnllgmkhgapnkhhiilikkllglln*

Frame C:
tfkqlketekdftvdenkfrvapsnetlmetvknleaknhrvsvveneadalnlllneip
kgsevmcassctideigfkkiyfsddspfvnvhkkilalpadkqadarkdaltsqyflss
vtaisktgnvyvadasgpelavslllki*ssflvitrllilmn*pskelnnsvyhv---

---NIQTIKRNRKKISLLMKINSELHQAMKP*wklsri*kprttefqslkmklml*iyy*
mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlinklmlvkml*phnt
fyhl*lqspklemfmlptlqvpelavslllki*ssflvitrllilmn*pskelnnsvyhv
kvfvlvgltkfqvq*fkifwv*nmvlqtnitlsslkny*gy*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD182 (VSD182Q) /CSM/VS/VSD1-D/VSD182Q.Seq.d/                       2331   0.0
VSJ656 (VSJ656Q) /CSM/VS/VSJ6-C/VSJ656Q.Seq.d/                       1298   0.0
VFE226 (VFE226Q) /CSM/VF/VFE2-B/VFE226Q.Seq.d/                       1283   0.0
SSE602 (SSE602Q) /CSM/SS/SSE6-A/SSE602Q.Seq.d/                       1267   0.0
SHF652 (SHF652Q) /CSM/SH/SHF6-C/SHF652Q.Seq.d/                       1263   0.0
CHG794 (CHG794Q) /CSM/CH/CHG7-D/CHG794Q.Seq.d/                       1257   0.0
CHM787 (CHM787Q) /CSM/CH/CHM7-D/CHM787Q.Seq.d/                       1255   0.0
SHD839 (SHD839Q) /CSM/SH/SHD8-B/SHD839Q.Seq.d/                       1251   0.0
SHI307 (SHI307Q) /CSM/SH/SHI3-A/SHI307Q.Seq.d/                       1249   0.0
CHQ230 (CHQ230Q) /CSM/CH/CHQ2-B/CHQ230Q.Seq.d/                       1247   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ310674|AJ310674.1 Dictyostelium discoideum 3B gene for prespore-specific protein 3B,.   666  0.0  4
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   666  0.0  10
L06178|L06178.1 Apis mellifera ligustica complete mitochondrial genome.    32  0.22  5
BY565063|BY565063.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830111K10, 3' end partial sequence.    48  0.26  1
AC009324|AC009324.2 Arabidopsis thaliana chromosome I BAC T18A20 genomic sequence, complete sequence.    38  0.52  3
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38  0.77  5
AC135415|AC135415.17 Medicago truncatula clone mth2-10b9, WORKING DRAFT SEQUENCE, 3 ordered pieces.    40  1.0  3
AC100657|AC100657.1 Mus musculus clone RP23-166C4, LOW-PASS SEQUENCE SAMPLING.    38  1.2  3
AZ526507|AZ526507.1 256PbC06 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    36  1.6  2
BX539216|BX539216.1 Leishmania braziliensis GSS, clone LBAF033C06.    38  2.8  2
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115605_5(AC115605|pid:none) Dictyostelium discoideum chromosom...   182   2e-44
AC115605_4(AC115605|pid:none) Dictyostelium discoideum chromosom...   181   6e-44
AY596296_161(AY596296|pid:none) Haloarcula marismortui ATCC 4304...   111   6e-23
AE015927_490(AE015927|pid:none) Clostridium tetani E88, complete...    68   8e-10
AM412317_887(AM412317|pid:none) Clostridium botulinum A str. ATC...    65   5e-09
CP001083_859(CP001083|pid:none) Clostridium botulinum Ba4 str. 6...    65   5e-09
CP001393_1815(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    64   1e-08
CP001393_2285(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    59   5e-07
BA000016_2602(BA000016|pid:none) Clostridium perfringens str. 13...    58   6e-07
CP000885_3236(CP000885|pid:none) Clostridium phytofermentans ISD...    56   2e-06
protein update 2009. 7.29
PSORT 

 psg: 0.98  gvh: 0.45  alm: 0.42  top: 0.73  tms: 0.00  mit: 0.49  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall

>> prediction for VSD182 is mit
5' end seq. ID VSD182F
5' end seq. 
>VSD182F.Seq
TAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCA
GAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACC
ACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGAAATCC
CAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTCAAGA
AAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTAC
CAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTTTTATCAT
CTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGTCCAGAGT
TGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGA
TTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAA--------
--
Length of 5' end seq. 532
3' end seq. ID VSD182Z
3' end seq. 
>VSD182Z.Seq
----------GTAACATTCAAACAATTAAAAGAAACCGAAAAAAGATTTCACTGTTGATG
AAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAG
AAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTAT
TAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAA
TCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGA
TTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAAT
ACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTT
CAGGTACCAGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATA
ACAAGATTGTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCAT
GTGAAAGTGTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAATGATTCAAAATCTTT
TGGGTATGAAACATGGTGCTCCAAACAAACATCACATTATCCTCATTAAAAAATTATTAG
GGTTATTAAATTAA
Length of 3' end seq. 664
Connected seq. ID VSD182P
Connected seq. 
>VSD182P.Seq
TAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCA
GAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACC
ACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGAAATCC
CAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTCAAGA
AAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTAC
CAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTTTTATCAT
CTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGTCCAGAGT
TGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGA
TTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAA--------
--GTAACATTCAAACAATTAAAAGAAACCGAAAAAAGATTTCACTGTTGATGAAAATAAA
TTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCCAAG
AACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGAA
ATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTC
AAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCT
TTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTTTTA
TCATCTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGTACC
AGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAGATT
GTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAAAGT
GTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAATGATTCAAAATCTTTTGGGTATG
AAACATGGTGCTCCAAACAAACATCACATTATCCTCATTAAAAAATTATTAGGGTTATTA
AATTAA
Length of connected seq. 1196
Full length Seq ID -
Full length Seq. -
Length of full length seq. -