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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD177
Library VS
(Link to library)
Clone ID VSD177
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID VSD177P
(Link to Original site)
Representative DNA sequence 
>VSD177 (VSD177Q) /CSM/VS/VSD1-D/VSD177Q.Seq.d/
CACAGNATAATTTTCAAAATGAGCGGAAAGAAAGAAGTCAAAGCCCCAAAAGTTGTTGAA
GCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTAGTCTTTGGTGTTGCCCATATC
TTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGATTTATCCTCAAAAGAAACCATT
GTTCGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGTGATGAATCTTCGCCATACGCT
GCCACCATGGCCGCTCAAGATGTCGCCCTCCGTTGTAAAGAACTCGGTGTCACTGCTCTC
CATATTAAATTAAGAGCTACCGGTGGTAATGGTTCAAAGACCCCAGGTCCAGGTGCTCAA
TCTGCCCTCAGAGCTTTAGCTCGTTCAGGTATGAGAATTGGTCGTATTGAAGATGTTACC
CCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCATCGTGGTAGACGTTTATAAACA
TTTGGATCTCATCATTCAAGTGCTTTTTTAATAATAATACTACAACCTTTTTAATTTTAA
AAAAAACCAAAAAAAAAACAAXXXXXXXXXXCCACGCGTCCCGCACAGATAATTTTCAAA
ATGAGCGGAAAGAAAGAAGTCAAAGCCCCAAAAGTTGTTGAAGCTTTATCAGCCAAAATC
CCATGTGGTCCAAGTGAATTAGTNTTTGGTGTTGCCCATATNTTCGCCTCATTCAATGAT
ACCTTTGTCCACGTCACTGATTTATCCTCAAAAGAAACCATTGTTCGTGTTACTGGTGGT
ATGAAAGTTAAAACCGATCGTGATGAATNTTCGCCATACGCTGCCACCATGGCCGCTCAA
GATGTCGCCCTCCGTTGTAAAGAACTCGGTGTCACTGCTCTCCATATTAAATTAAGAGCT
ACCGGTGGTAATGGTTCAAAGACCCCAGGTCCAGGTGCTCAATCTGCCCTCAGAGCTTTA
GCTCGTTCAGGTATGAGAATTGGTCGTATTGAAGATGTTACCCCAATTCCAACTGATTCA
ACCAGAAGAAAGAGCGGTCATCGTGGTAGACGTTTATAAACATTTGGATCTCATCATTCA
AGTGCTTTTTTAATAATAATACTACAACCTTTTTAATTTTAAAAAAAACCAAAAAAAAAA
CAATTGTTTTAATACAACAACAACTCTAATAAAATAGG
sequence update 2001. 3.22
Translated Amino Acid sequence 
qxnfqnerkersqspksc*sfisqnpmwsk*islwccpylrliq*ylcprh*filkrnhc
scywwyes*nrs**ifairchhgrsrcrppl*rtrchcspy*iksyrw*wfkdprsrcsi
cpqsfssfryenwsy*rcypnsn*fnqkkerssw*TFINIWISSFKCFFNNNTTTFLILK
KTKKKT---

---TRPAQIIFKMSGKKEVKAPKVVEALSAKIPCGPSELVFGVAHXFASFNDTFVHVTDL
SSKETIVRVTGGMKVKTDRDEXSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKT
PGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKSGHRGRRL*tfgshhssafliiil
qpf*f*kkpkkkqlf*ynnnsnki
Translated Amino Acid sequence (All Frames) 
Frame A:
hxiifkmsgkkevkapkvvealsakipcgpselvfgvahifasfndtfvhvtdlssketi
vrvtggmkvktdrdesspyaatmaaqdvalrckelgvtalhiklratggngsktpgpgaq
salralarsgmrigriedvtpiptdstrrksghrgrrl*tfgshhssafliiilqpf*f*
kkpkkkq---

---prvphr*fsk*aerkkskpqkllklyqpkshvvqvn*xlvlpixsphsmiplstsli
ypqkkplfvllvv*klkpivmnxrhtlppwplkmspsvvknsvsllsiln*elpvvmvqr
pqvqvlnlpsel*lvqv*elvvlkmlpqfqliqpeeravivvdvykhldliiqvlf***y
ynlfnfkknqkknncfnttttlik*

Frame B:
tx*fsk*aerkkskpqkllklyqpkshvvqvn*slvlpissphsmiplstsliypqkkpl
fvllvv*klkpivmnlrhtlppwplkmspsvvknsvsllsiln*elpvvmvqrpqvqvln
lpsel*lvqv*elvvlkmlpqfqliqpeeravivvdvykhldliiqvlf***yynlfnfk
knqkkn---

---hasrtdnfqnerkersqspksc*sfisqnpmwsk*isxwccpyxrliq*ylcprh*f
ilkrnhcscywwyes*nrs**xfairchhgrsrcrppl*rtrchcspy*iksyrw*wfkd
prsrcsicpqsfssfryenwsy*rcypnsn*fnqkkerssw*tfiniwissfkcffnnnt
ttflilkktkkktivliqqql**nr

Frame C:
qxnfqnerkersqspksc*sfisqnpmwsk*islwccpylrliq*ylcprh*filkrnhc
scywwyes*nrs**ifairchhgrsrcrppl*rtrchcspy*iksyrw*wfkdprsrcsi
cpqsfssfryenwsy*rcypnsn*fnqkkerssw*TFINIWISSFKCFFNNNTTTFLILK
KTKKKT---

---TRPAQIIFKMSGKKEVKAPKVVEALSAKIPCGPSELVFGVAHXFASFNDTFVHVTDL
SSKETIVRVTGGMKVKTDRDEXSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKT
PGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKSGHRGRRL*tfgshhssafliiil
qpf*f*kkpkkkqlf*ynnnsnki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD177 (VSD177Q) /CSM/VS/VSD1-D/VSD177Q.Seq.d/                       1070   0.0
VSH639 (VSH639Q) /CSM/VS/VSH6-B/VSH639Q.Seq.d/                       1053   0.0
VSH511 (VSH511Q) /CSM/VS/VSH5-A/VSH511Q.Seq.d/                       1047   0.0
VSH243 (VSH243Q) /CSM/VS/VSH2-B/VSH243Q.Seq.d/                       1047   0.0
VSF876 (VSF876Q) /CSM/VS/VSF8-D/VSF876Q.Seq.d/                       1047   0.0
VSF230 (VSF230Q) /CSM/VS/VSF2-B/VSF230Q.Seq.d/                       1047   0.0
FC-BI06 (FC-BI06Q) /CSM/FC/FC-BI/FC-BI06Q.Seq.d/                     1047   0.0
FC-093 (FC-093Q) /CSM/CG/CG-FC/FC-093Q.Seq.d/                        1047   0.0
VSH460 (VSH460Q) /CSM/VS/VSH4-C/VSH460Q.Seq.d/                       1035   0.0
VSD471 (VSD471Q) /CSM/VS/VSD4-C/VSD471Q.Seq.d/                       1035   0.0
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI773239|BI773239.1 kx03f05.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RS14_CAEEL P48150 PROBABLE 40S RIBOSOMAL PROTEIN S14. [1] ;, mRNA sequence.    92  1e-31  3
AF365406|AF365406.1 Candida albicans YIP3-like protein (YIP3) gene, partial cds; and ribosomal protein L39 (RPL39), ribosomal protein S22 (RPS22), and ribosomal protein S14 (RPS14) genes, complete cds.    86  2e-26  3
BI703786|BI703786.1 kx23c06.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RS14_CAEEL P48150 PROBABLE 40S RIBOSOMAL PROTEIN S14. [1] ;, mRNA sequence.    92  7e-26  2
BM027149|BM027149.1 GIT0000446 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    78  4e-25  3
BM072972|BM072972.1 MEST56-F08.T3 ISUM4-TN Zea mays cDNA clone MEST56-F08 3', mRNA sequence.    66  2e-23  3
AL418236|AL418236.1 T7 end of clone AX0AA030B05 of library AX0AA from strain CBS 7064 of Pichia farinosa.    66  3e-23  5
BF114468|BF114468.1 SsS0203 Suaeda salsa ZAP cDNA library Suaeda maritima subsp. salsa cDNA similar to 40S ribosomal protein, mRNA sequence.    80  7e-23  2
AW991129|AW991129.1 SsS0303 Suaeda salsa ZAP cDNA library Suaeda maritima subsp. salsa cDNA similar to putative 40S ribosomal protein s14, mRNA sequence.    80  8e-23  2
CB043177|CB043177.1 Tc_L3_19B10_SKPL Teladorsagia circumcincta L3 library Teladorsagia circumcincta cDNA clone Tc_L3_19B10 5' similar to P48150 Probable 40S ribosomal protein S14. Caenorhabditis elegans, mRNA sequence.    68  3e-22  3
CB819911|CB819911.1 EST 903 Green Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone ba004f15 3', mRNA sequence.    76  6e-22  3
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54EG3) RecName: Full=40S ribosomal protein S14;                     273   9e-72
HB438133_1(HB438133|pid:none) Sequence 951 from Patent WO2009077...   227   5e-58
BT070377_1(BT070377|pid:none) Picea sitchensis clone WS02725_B22...   227   7e-58
EU960087_1(EU960087|pid:none) Zea mays clone 221629 40S ribosoma...   227   7e-58
(P19950) RecName: Full=40S ribosomal protein S14; AltName: Full=...   227   7e-58
HB437497_1(HB437497|pid:none) Sequence 315 from Patent WO2009077...   226   9e-58
BT034561_1(BT034561|pid:none) Zea mays full-length cDNA clone ZM...   226   1e-57
HB437493_1(HB437493|pid:none) Sequence 311 from Patent WO2009077...   226   2e-57
EU285011_1(EU285011|pid:none) TSA: Elaeis guineensis EgEfMPOB001...   226   2e-57
EU976524_1(EU976524|pid:none) Zea mays clone 896801 40S ribosoma...   226   2e-57
protein update 2009. 7.29
PSORT 

 psg: 0.87  gvh: 0.24  alm: 0.43  top: 0.60  tms: 0.00  mit: 0.42  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSD177 is cyt
5' end seq. ID VSD177F
5' end seq. 
>VSD177F.Seq
CACAGNATAATTTTCAAAATGAGCGGAAAGAAAGAAGTCAAAGCCCCAAAAGTTGTTGAA
GCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTAGTCTTTGGTGTTGCCCATATC
TTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGATTTATCCTCAAAAGAAACCATT
GTTCGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGTGATGAATCTTCGCCATACGCT
GCCACCATGGCCGCTCAAGATGTCGCCCTCCGTTGTAAAGAACTCGGTGTCACTGCTCTC
CATATTAAATTAAGAGCTACCGGTGGTAATGGTTCAAAGACCCCAGGTCCAGGTGCTCAA
TCTGCCCTCAGAGCTTTAGCTCGTTCAGGTATGAGAATTGGTCGTATTGAAGATGTTACC
CCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCATCGTGGTAGACGTTTATAAACA
TTTGGATCTCATCATTCAAGTGCTTTTTTAATAATAATACTACAACCTTTTTAATTTTAA
AAAAAACCAAAAAAAAAACAA----------
Length of 5' end seq. 561
3' end seq. ID VSD177Z
3' end seq. 
>VSD177Z.Seq
----------CCACGCGTCCCGCACAGATAATTTTCAAAATGAGCGGAAAGAAAGAAGTC
AAAGCCCCAAAAGTTGTTGAAGCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTA
GTNTTTGGTGTTGCCCATATNTTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGAT
TTATCCTCAAAAGAAACCATTGTTCGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGT
GATGAATNTTCGCCATACGCTGCCACCATGGCCGCTCAAGATGTCGCCCTCCGTTGTAAA
GAACTCGGTGTCACTGCTCTCCATATTAAATTAAGAGCTACCGGTGGTAATGGTTCAAAG
ACCCCAGGTCCAGGTGCTCAATCTGCCCTCAGAGCTTTAGCTCGTTCAGGTATGAGAATT
GGTCGTATTGAAGATGTTACCCCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCAT
CGTGGTAGACGTTTATAAACATTTGGATCTCATCATTCAAGTGCTTTTTTAATAATAATA
CTACAACCTTTTTAATTTTAAAAAAAACCAAAAAAAAAACAATTGTTTTAATACAACAAC
AACTCTAATAAAATAGG
Length of 3' end seq. 607
Connected seq. ID VSD177P
Connected seq. 
>VSD177P.Seq
CACAGNATAATTTTCAAAATGAGCGGAAAGAAAGAAGTCAAAGCCCCAAAAGTTGTTGAA
GCTTTATCAGCCAAAATCCCATGTGGTCCAAGTGAATTAGTCTTTGGTGTTGCCCATATC
TTCGCCTCATTCAATGATACCTTTGTCCACGTCACTGATTTATCCTCAAAAGAAACCATT
GTTCGTGTTACTGGTGGTATGAAAGTTAAAACCGATCGTGATGAATCTTCGCCATACGCT
GCCACCATGGCCGCTCAAGATGTCGCCCTCCGTTGTAAAGAACTCGGTGTCACTGCTCTC
CATATTAAATTAAGAGCTACCGGTGGTAATGGTTCAAAGACCCCAGGTCCAGGTGCTCAA
TCTGCCCTCAGAGCTTTAGCTCGTTCAGGTATGAGAATTGGTCGTATTGAAGATGTTACC
CCAATTCCAACTGATTCAACCAGAAGAAAGAGCGGTCATCGTGGTAGACGTTTATAAACA
TTTGGATCTCATCATTCAAGTGCTTTTTTAATAATAATACTACAACCTTTTTAATTTTAA
AAAAAACCAAAAAAAAAACAA----------CCACGCGTCCCGCACAGATAATTTTCAAA
ATGAGCGGAAAGAAAGAAGTCAAAGCCCCAAAAGTTGTTGAAGCTTTATCAGCCAAAATC
CCATGTGGTCCAAGTGAATTAGTNTTTGGTGTTGCCCATATNTTCGCCTCATTCAATGAT
ACCTTTGTCCACGTCACTGATTTATCCTCAAAAGAAACCATTGTTCGTGTTACTGGTGGT
ATGAAAGTTAAAACCGATCGTGATGAATNTTCGCCATACGCTGCCACCATGGCCGCTCAA
GATGTCGCCCTCCGTTGTAAAGAACTCGGTGTCACTGCTCTCCATATTAAATTAAGAGCT
ACCGGTGGTAATGGTTCAAAGACCCCAGGTCCAGGTGCTCAATCTGCCCTCAGAGCTTTA
GCTCGTTCAGGTATGAGAATTGGTCGTATTGAAGATGTTACCCCAATTCCAACTGATTCA
ACCAGAAGAAAGAGCGGTCATCGTGGTAGACGTTTATAAACATTTGGATCTCATCATTCA
AGTGCTTTTTTAATAATAATACTACAACCTTTTTAATTTTAAAAAAAACCAAAAAAAAAA
CAATTGTTTTAATACAACAACAACTCTAATAAAATAGG
Length of connected seq. 1168
Full length Seq ID -
Full length Seq. -
Length of full length seq. -