NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD168
Library VS
(Link to library)
Clone ID VSD168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14705-1
Original site URL
Representative seq. ID VSD168P
(Link to Original site)
Representative DNA sequence 
>VSD168 (VSD168Q) /CSM/VS/VSD1-C/VSD168Q.Seq.d/
GCGTCCGAATGAGAATTGCTTTCTTTTTACTTGTTTTAGCCGTTATTATCGGATTTGCTT
ATGGTTACAGTTGTCCAAAACCATGTTATGGTAACATGTGTTGTTCAACTTCACCAAATA
ACCAATATTATTTAACTGATTTCTGTGGAAGCACAAGTGCTTGTGGTCCAGTTCCATCAT
GTAGTGGTGCTCTCTATTTCACAGCTGATAGTCAACGTTTTGGTTGTGGTAAATATTTAA
ATCTTTGCAGAAGTGGTAAATGTGTTAAAGCCCAAATTTATGATGCTGGTCCAGCCATGT
GGGTTGAACAAGATGCTGGTATGATGATTATTGATGCATCACCAACTATTTGTCACGTTC
TCACTGGTGGATCATCATGTGGTTGGAGTGATCATTTCCTTATCACAGCAACTGTTACAT
CTCTCACTGATTCAAGACCACTCGGTCCATTCAATGTTACTGAATCAGAAATGGCTCAAC
TTTTCATTGATCATGAAATTGCTATGGCTCAATGTGAAGCTGAAAAGACCTGTAATGGTT
TTGATCTCGAATAAATTATATACTTTAATATTTAAAATAAAAAATTTATTTTCTCTTTGT
CGATTAANAAAAAAAAXXXXXXXXXXAATGAGAATTGCTTTCTTTTTACTTGTTTTAGCC
GTTATTATCGGATTTGCTTATGGTTACAGTTGTCCAAAACCATGTTATGGTAACATGTGT
TGTTCAACTTCACCAAATAACCAATATTATTTAACTGATTTCTGTGGAAGCACAAGTGCT
TGTGGTCCAGTTCCATCATGTAGTGGTGCTCTCTATTTCACAGCTGATAGTCAACGTTTT
GGTTGTGGTAAATATTTAAATCTTTGCAGAAGTGGTAAATGTGTTAAAGCCCAAATTTAT
GATGCTGGTCCAGCCATGTGGGTTGAACAAGATGCTGGTATGATGATTATTGATGCATCA
CCAACTATTTGTCACGTTCTCACTGGTGGATCATCATGTGGTTGGAGTGATCATTTCCTT
ATCACAGCAACTGTTACATCTCTCACTGATTCAAGACCACTCGGTCCATTCAATGTTACT
GAATCAGAAATGGCTCAACTTTTCATTGATCATGAAATTGCTATGGCTCAATGTGAAGCT
GAAAAGACCTGTAATGGTTTTNATCTCGAATAAATTATATACTTAATATTTAAAATAAAA
AATT
sequence update 2001. 3.22
Translated Amino Acid sequence 
ase*ellsfylf*pllsdllmvtvvqnhvmvtcvvqlhqitnii*lisveaqvlvvqfhh
vvvlsisqlivnvlvvvni*ifaevvnvlkpkfmmlvqpcglnkmlv**LLMHHQLFVTF
SLVDHHVVGVIISLSQQLLHLSLIQDHSVHSMLLNQKWLNFSLIMKLLWLNVKLKRPVMV
LISNKLYTLIFKIKNLFSLCRLXKK---

---MRIAFFLLVLAVIIGFAYGYSCPKPCYGNMCCSTSPNNQYYLTDFCGSTSACGPVPS
CSGALYFTADSQRFGCGKYLNLCRSGKCVKAQIYDAGPAMWVEQDAGMMIIDASPTICHV
LTGGSSCGWSDHFLITATVTSLTDSRPLGPFNVTESEMAQLFIDHEIAMAQCEAEKTCNG
FXLE*iiylifkikn
Translated Amino Acid sequence (All Frames) 
Frame A:
ase*ellsfylf*pllsdllmvtvvqnhvmvtcvvqlhqitnii*lisveaqvlvvqfhh
vvvlsisqlivnvlvvvni*ifaevvnvlkpkfmmlvqpcglnkmlv**LLMHHQLFVTF
SLVDHHVVGVIISLSQQLLHLSLIQDHSVHSMLLNQKWLNFSLIMKLLWLNVKLKRPVMV
LISNKLYTLIFKIKNLFSLCRLXKK---

---nencflftcfsryyriclwlqlsktmlw*hvlfnftk*pilfn*flwkhkclwsssi
m*wcslfhs**stfwlw*ifkslqkw*mc*spnl*cwsshvg*trcwyddy*citnylsr
shwwiimwle*sfpyhsncyish*fkttrsiqcy*irngstfh*s*ncygsm*s*kdl*w
fxsrinyilni*nkk

Frame B:
rpnencflftcfsryyriclwlqlsktmlw*hvlfnftk*pilfn*flwkhkclwsssim
*wcslfhs**stfwlw*ifkslqkw*mc*spnl*cwsshvg*trcwyddy*citnylsrs
hwwiimwle*sfpyhsncyish*fkttrsiqcy*irngstfh*s*ncygsm*s*kdl*wf
*srinyil*ylk*kiyflfvd*xkk---

---MRIAFFLLVLAVIIGFAYGYSCPKPCYGNMCCSTSPNNQYYLTDFCGSTSACGPVPS
CSGALYFTADSQRFGCGKYLNLCRSGKCVKAQIYDAGPAMWVEQDAGMMIIDASPTICHV
LTGGSSCGWSDHFLITATVTSLTDSRPLGPFNVTESEMAQLFIDHEIAMAQCEAEKTCNG
FXLE*iiylifkikn

Frame C:
vrmriaffllvlaviigfaygyscpkpcygnmccstspnnqyyltdfcgstsacgpvpsc
sgalyftadsqrfgcgkylnlcrsgkcvkaqiydagpamwveqdagmmiidasptichvl
tggsscgwsdhflitatvtsltdsrplgpfnvtesemaqlfidheiamaqceaektcngf
dle*iiyfni*nkkfifslsixkk---

---*ellsfylf*pllsdllmvtvvqnhvmvtcvvqlhqitnii*lisveaqvlvvqfhh
vvvlsisqlivnvlvvvni*ifaevvnvlkpkfmmlvqpcglnkmlv**llmhhqlfvtf
slvdhhvvgviislsqqllhlsliqdhsvhsmllnqkwlnfslimkllwlnvklkrpvmv
xisnklyt*ylk*ki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD168 (VSD168Q) /CSM/VS/VSD1-C/VSD168Q.Seq.d/                       1203   0.0
VHN693 (VHN693Q) /CSM/VH/VHN6-D/VHN693Q.Seq.d/                       1189   0.0
SSI544 (SSI544Q) /CSM/SS/SSI5-B/SSI544Q.Seq.d/                       1189   0.0
SSF469 (SSF469Q) /CSM/SS/SSF4-C/SSF469Q.Seq.d/                       1189   0.0
VSB715 (VSB715Q) /CSM/VS/VSB7-A/VSB715Q.Seq.d/                       1185   0.0
VSJ745 (VSJ745Q) /CSM/VS/VSJ7-B/VSJ745Q.Seq.d/                       1183   0.0
VSJ315 (VSJ315Q) /CSM/VS/VSJ3-A/VSJ315Q.Seq.d/                       1183   0.0
SSE827 (SSE827Q) /CSM/SS/SSE8-B/SSE827Q.Seq.d/                       1170   0.0
SSC458 (SSC458Q) /CSM/SS/SSC4-C/SSC458Q.Seq.d/                       1158   0.0
VSJ378 (VSJ378Q) /CSM/VS/VSJ3-D/VSJ378Q.Seq.d/                       1142   0.0
own update 2004. 8. 5
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   581  0.0  17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    48  4e-05  9
AX356494|AX356494.1 Sequence 128 from Patent WO0181622.           34  0.027  5
AX347027|AX347027.1 Sequence 2098 from Patent WO0200928.          34  0.027  5
X01216|X01216.1 Yeast mitochondrial origin of replication sequence ori 5.    32  0.038  4
AP004943|AP004943.1 Lotus japonicus genomic DNA, chromosome 3, clone:LjT38E13, TM0115.    40  0.053  3
BX005068|BX005068.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36  0.089  6
AX348807|AX348807.1 Sequence 265 from Patent WO0202807.           40  0.10  3
AX348424|AX348424.1 Sequence 119 from Patent WO0202806.           40  0.10  3
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    36  0.11  7
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T1G4) RecName: Full=Lysozyme A;          EC=3.2.1.n1; AltName...   387   e-106
(Q54M35) RecName: Full=Putative lysozyme-like protein; Flags: Pr...    54   1e-05
(A8MVA2) RecName: Full=Putative keratin-associated protein 9-2-l...    36   3.1
protein update 2009. 3.20
PSORT 

 psg: 0.96  gvh: 0.47  alm: 0.19  top: 0.47  tms: 0.13  mit: 0.22  mip: 0.28
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VSD168 is mit
5' end seq. ID VSD168F
5' end seq. 
>VSD168F.Seq
GCGTCCGAATGAGAATTGCTTTCTTTTTACTTGTTTTAGCCGTTATTATCGGATTTGCTT
ATGGTTACAGTTGTCCAAAACCATGTTATGGTAACATGTGTTGTTCAACTTCACCAAATA
ACCAATATTATTTAACTGATTTCTGTGGAAGCACAAGTGCTTGTGGTCCAGTTCCATCAT
GTAGTGGTGCTCTCTATTTCACAGCTGATAGTCAACGTTTTGGTTGTGGTAAATATTTAA
ATCTTTGCAGAAGTGGTAAATGTGTTAAAGCCCAAATTTATGATGCTGGTCCAGCCATGT
GGGTTGAACAAGATGCTGGTATGATGATTATTGATGCATCACCAACTATTTGTCACGTTC
TCACTGGTGGATCATCATGTGGTTGGAGTGATCATTTCCTTATCACAGCAACTGTTACAT
CTCTCACTGATTCAAGACCACTCGGTCCATTCAATGTTACTGAATCAGAAATGGCTCAAC
TTTTCATTGATCATGAAATTGCTATGGCTCAATGTGAAGCTGAAAAGACCTGTAATGGTT
TTGATCTCGAATAAATTATATACTTTAATATTTAAAATAAAAAATTTATTTTCTCTTTGT
CGATTAANAAAAAAAA----------
Length of 5' end seq. 616
3' end seq. ID VSD168Z
3' end seq. 
>VSD168Z.Seq
----------AATGAGAATTGCTTTCTTTTTACTTGTTTTAGCCGTTATTATCGGATTTG
CTTATGGTTACAGTTGTCCAAAACCATGTTATGGTAACATGTGTTGTTCAACTTCACCAA
ATAACCAATATTATTTAACTGATTTCTGTGGAAGCACAAGTGCTTGTGGTCCAGTTCCAT
CATGTAGTGGTGCTCTCTATTTCACAGCTGATAGTCAACGTTTTGGTTGTGGTAAATATT
TAAATCTTTGCAGAAGTGGTAAATGTGTTAAAGCCCAAATTTATGATGCTGGTCCAGCCA
TGTGGGTTGAACAAGATGCTGGTATGATGATTATTGATGCATCACCAACTATTTGTCACG
TTCTCACTGGTGGATCATCATGTGGTTGGAGTGATCATTTCCTTATCACAGCAACTGTTA
CATCTCTCACTGATTCAAGACCACTCGGTCCATTCAATGTTACTGAATCAGAAATGGCTC
AACTTTTCATTGATCATGAAATTGCTATGGCTCAATGTGAAGCTGAAAAGACCTGTAATG
GTTTTNATCTCGAATAAATTATATACTTAATATTTAAAATAAAAAATT
Length of 3' end seq. 578
Connected seq. ID VSD168P
Connected seq. 
>VSD168P.Seq
GCGTCCGAATGAGAATTGCTTTCTTTTTACTTGTTTTAGCCGTTATTATCGGATTTGCTT
ATGGTTACAGTTGTCCAAAACCATGTTATGGTAACATGTGTTGTTCAACTTCACCAAATA
ACCAATATTATTTAACTGATTTCTGTGGAAGCACAAGTGCTTGTGGTCCAGTTCCATCAT
GTAGTGGTGCTCTCTATTTCACAGCTGATAGTCAACGTTTTGGTTGTGGTAAATATTTAA
ATCTTTGCAGAAGTGGTAAATGTGTTAAAGCCCAAATTTATGATGCTGGTCCAGCCATGT
GGGTTGAACAAGATGCTGGTATGATGATTATTGATGCATCACCAACTATTTGTCACGTTC
TCACTGGTGGATCATCATGTGGTTGGAGTGATCATTTCCTTATCACAGCAACTGTTACAT
CTCTCACTGATTCAAGACCACTCGGTCCATTCAATGTTACTGAATCAGAAATGGCTCAAC
TTTTCATTGATCATGAAATTGCTATGGCTCAATGTGAAGCTGAAAAGACCTGTAATGGTT
TTGATCTCGAATAAATTATATACTTTAATATTTAAAATAAAAAATTTATTTTCTCTTTGT
CGATTAANAAAAAAAA----------AATGAGAATTGCTTTCTTTTTACTTGTTTTAGCC
GTTATTATCGGATTTGCTTATGGTTACAGTTGTCCAAAACCATGTTATGGTAACATGTGT
TGTTCAACTTCACCAAATAACCAATATTATTTAACTGATTTCTGTGGAAGCACAAGTGCT
TGTGGTCCAGTTCCATCATGTAGTGGTGCTCTCTATTTCACAGCTGATAGTCAACGTTTT
GGTTGTGGTAAATATTTAAATCTTTGCAGAAGTGGTAAATGTGTTAAAGCCCAAATTTAT
GATGCTGGTCCAGCCATGTGGGTTGAACAAGATGCTGGTATGATGATTATTGATGCATCA
CCAACTATTTGTCACGTTCTCACTGGTGGATCATCATGTGGTTGGAGTGATCATTTCCTT
ATCACAGCAACTGTTACATCTCTCACTGATTCAAGACCACTCGGTCCATTCAATGTTACT
GAATCAGAAATGGCTCAACTTTTCATTGATCATGAAATTGCTATGGCTCAATGTGAAGCT
GAAAAGACCTGTAATGGTTTTNATCTCGAATAAATTATATACTTAATATTTAAAATAAAA
AATT
Length of connected seq. 1194
Full length Seq ID -
Full length Seq. -
Length of full length seq. -