>VSD167 (VSD167Q) /CSM/VS/VSD1-C/VSD167Q.Seq.d/
GGATCTTATTCAACAATCAANCAATTTAGGCCAATTAAAGAANGGNGCTANCGAATGTCC
CAAAGCCGTTTCACGTAGTNCTGCTGAATTTGTNGTTTTAGCCGCTGATGCTGANCCATT
ANAAATTTTATTNCNCATTCCATTNTTATGNGAXXXXXXXXXX

DLIQQSXNLGQLKXGAXECPKAVSRSXAEFVVLAADAXPLXILXXIPXLX---

Frame A:
gsystixqfrpikexxxrmsqsrft*xc*icxfsr*c*xixnfixhsixm---


Frame B:
DLIQQSXNLGQLKXGAXECPKAVSRSXAEFVVLAADAXPLXILXXIPXLX---


Frame C:
ilfnnqxi*an*rxxlxnvpkpfhvvllnlxf*plmlxhxkfyxxfhxyx---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD167 (VSD167Q) /CSM/VS/VSD1-C/VSD167Q.Seq.d/                        232   1e-60
VSJ453 (VSJ453Q) /CSM/VS/VSJ4-C/VSJ453Q.Seq.d/                        224   3e-58
VSA228 (VSA228Q) /CSM/VS/VSA2-B/VSA228Q.Seq.d/                        224   3e-58
VSC366 (VSC366Q) /CSM/VS/VSC3-C/VSC366Q.Seq.d/                        216   7e-56
VSG413 (VSG413Q) /CSM/VS/VSG4-A/VSG413Q.Seq.d/                         30   9.1
VSF332 (VSF332Q) /CSM/VS/VSF3-B/VSF332Q.Seq.d/                         30   9.1
VSE727 (VSE727Q) /CSM/VS/VSE7-B/VSE727Q.Seq.d/                         30   9.1

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB890904|CB890904.1 taa55f09.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:NHPX_HUMAN P55769 NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG ;, mRNA sequence.    50  0.008  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ST0) RecName: Full=NHP2-like protein 1 homolog;                    73   4e-12
EF082562_1(EF082562|pid:none) Picea sitchensis clone WS0297_E17 ...    56   5e-07
AY086674_1(AY086674|pid:none) Arabidopsis thaliana clone 2673 mR...    55   1e-06
CR940353_812(CR940353|pid:none) Theileria annulata strain Ankara...    54   2e-06
(Q5ANL6) RecName: Full=13 kDa ribonucleoprotein-associated prote...    54   2e-06
Z83840_6(Z83840|pid:none) Human DNA sequence from clone CTA-216E...    54   2e-06
AK004489_1(AK004489|pid:none) Mus musculus 18-day embryo whole b...    54   2e-06
(P55769) RecName: Full=NHP2-like protein 1; AltName: Full=High m...    54   2e-06
AB170841_1(AB170841|pid:none) Macaca fascicularis brain cDNA clo...    54   2e-06
(Q6BLQ3) RecName: Full=13 kDa ribonucleoprotein-associated prote...    54   2e-06

 psg: 0.75  gvh: 0.48  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: Golgi

>> prediction for VSD167 is cyt

>VSD167F.Seq
GGATCTTATTCAACAATCAANCAATTTAGGCCAATTAAAGAANGGNGCTANCGAATGTCC
CAAAGCCGTTTCACGTAGTNCTGCTGAATTTGTNGTTTTAGCCGCTGATGCTGANCCATT
ANAAATTTTATTNCNCATTCCATTNTTATGNGA----------